data_EBQ
#

_chem_comp.id                                   EBQ
_chem_comp.name                                 "(3S)-3-hydroxybutyl alpha-D-glucopyranoside"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C10 H20 O7"
_chem_comp.mon_nstd_parent_comp_id              GLC
_chem_comp.pdbx_synonyms                        
;(2~{R},3~{S},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-[(3~{S})-3-oxidanylbutoxy]oxane-3,4,5-triol; reacted
3R,4-EPOXYBUTYL-ALPHA-D-GLUCOPYRANOSIDE; (3S)-3-hydroxybutyl alpha-D-glucoside; (3S)-3-hydroxybutyl D-glucoside;
(3S)-3-hydroxybutyl glucoside
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2010-06-04
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       252.262
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    EBQ
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2XGI
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  EBQ  "(2~{R},3~{S},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-[(3~{S})-3-oxidanylbutoxy]oxane-3,4,5-triol"  PDB  ?  
2  EBQ  "reacted 3R,4-EPOXYBUTYL-ALPHA-D-GLUCOPYRANOSIDE"                                                  PDB  ?  
3  EBQ  "(3S)-3-hydroxybutyl alpha-D-glucoside"                                                            PDB  ?  
4  EBQ  "(3S)-3-hydroxybutyl D-glucoside"                                                                  PDB  ?  
5  EBQ  "(3S)-3-hydroxybutyl glucoside"                                                                    PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
EBQ  O17  O17  O  0  1  N  N  N  15.377  10.211  25.526   4.744  -0.442   0.750  O17  EBQ   1  
EBQ  C9   C9   C  0  1  N  N  S  14.424   9.462  24.801   4.162   0.282  -0.336  C9   EBQ   2  
EBQ  C16  C16  C  0  1  N  N  N  14.075  10.263  23.535   5.102   0.237  -1.542  C16  EBQ   3  
EBQ  C8   C8   C  0  1  N  N  N  14.998   8.058  24.643   2.821  -0.352  -0.711  C8   EBQ   4  
EBQ  C7   C7   C  0  1  N  N  N  15.233   7.573  26.069   1.840  -0.196   0.453  C7   EBQ   5  
EBQ  O1   O1   O  0  1  N  N  N  14.061   8.009  26.751   0.587  -0.788   0.102  O1   EBQ   6  
EBQ  C1   C1   C  0  1  N  N  S  13.885   7.329  27.973  -0.406  -0.696   1.126  C1   EBQ   7  
EBQ  C2   C2   C  0  1  N  N  R  12.393   7.147  28.157  -1.607  -1.568   0.752  C2   EBQ   8  
EBQ  O2   O2   O  0  1  N  N  N  11.913   6.603  26.935  -1.177  -2.918   0.561  O2   EBQ   9  
EBQ  C3   C3   C  0  1  N  N  S  11.694   8.470  28.443  -2.227  -1.041  -0.546  C3   EBQ  10  
EBQ  O3   O3   O  0  1  N  N  N  10.313   8.257  28.746  -3.392  -1.803  -0.864  O3   EBQ  11  
EBQ  C4   C4   C  0  1  N  N  S  12.374   9.191  29.592  -2.612   0.429  -0.354  C4   EBQ  12  
EBQ  O4   O4   O  0  1  N  N  N  11.707  10.453  29.779  -3.125   0.953  -1.581  O4   EBQ  13  
EBQ  C5   C5   C  0  1  N  N  R  13.859   9.369  29.242  -1.372   1.224   0.063  C5   EBQ  14  
EBQ  O5   O5   O  0  1  N  N  N  14.483   8.098  29.004  -0.828   0.663   1.259  O5   EBQ  15  
EBQ  C6   C6   C  0  1  N  N  N  14.660  10.065  30.327  -1.762   2.682   0.315  C6   EBQ  16  
EBQ  O6   O6   O  0  1  N  N  N  14.707   9.247  31.492  -0.587   3.448   0.591  O6   EBQ  17  
EBQ  H1A  H1   H  0  1  N  N  N  15.614   9.741  26.317   4.914  -1.373   0.556  H1A  EBQ  18  
EBQ  H2A  H2   H  0  1  N  N  N  13.505   9.378  25.400   4.003   1.319  -0.038  H2A  EBQ  19  
EBQ  H3A  H3   H  0  1  N  N  N  13.675  11.247  23.822   5.262  -0.800  -1.839  H3A  EBQ  20  
EBQ  H4A  H4   H  0  1  N  N  N  14.981  10.398  22.926   4.658   0.789  -2.370  H4A  EBQ  21  
EBQ  H5A  H5   H  0  1  N  N  N  14.283   7.403  24.123   2.419   0.143  -1.594  H5A  EBQ  22  
EBQ  H6   H6   H  0  1  N  N  N  15.944   8.087  24.082   2.967  -1.412  -0.923  H6   EBQ  23  
EBQ  H7   H7   H  0  1  N  N  N  15.327   6.478  26.104   2.242  -0.691   1.336  H7   EBQ  24  
EBQ  H8   H8   H  0  1  N  N  N  16.135   8.032  26.499   1.694   0.863   0.665  H8   EBQ  25  
EBQ  H1   H9   H  0  1  N  N  N  14.357   6.336  27.924   0.014  -1.041   2.071  H1   EBQ  26  
EBQ  H2   H10  H  0  1  N  N  N  12.210   6.453  28.990  -2.348  -1.530   1.551  H2   EBQ  27  
EBQ  HO2  H11  H  0  1  N  Y  N  10.975   6.467  26.995  -0.769  -3.315   1.343  HO2  EBQ  28  
EBQ  H3   H12  H  0  1  N  N  N  11.777   9.101  27.546  -1.503  -1.126  -1.357  H3   EBQ  29  
EBQ  HO3  H13  H  0  1  N  Y  N   9.894   9.092  28.921  -3.222  -2.746  -0.993  HO3  EBQ  30  
EBQ  H4   H14  H  0  1  N  N  N  12.293   8.578  30.502  -3.374   0.507   0.422  H4   EBQ  31  
EBQ  HO4  H15  H  0  1  N  Y  N  12.116  10.925  30.495  -3.910   0.493  -1.907  HO4  EBQ  32  
EBQ  H5   H16  H  0  1  N  N  N  13.920   9.978  28.328  -0.628   1.179  -0.732  H5   EBQ  33  
EBQ  H61  H17  H  0  1  N  N  N  15.683  10.246  29.966  -2.259   3.084  -0.568  H61  EBQ  34  
EBQ  H62  H18  H  0  1  N  N  N  14.183  11.025  30.574  -2.438   2.735   1.168  H62  EBQ  35  
EBQ  HO6  H19  H  0  1  N  Y  N  15.209   9.687  32.168  -0.759   4.384   0.761  HO6  EBQ  36  
EBQ  H20  H20  H  0  1  N  N  N  13.319   9.716  22.952   6.058   0.689  -1.275  H20  EBQ  37  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
EBQ  C16  C9   SING  N  N   1  
EBQ  C8   C9   SING  N  N   2  
EBQ  C8   C7   SING  N  N   3  
EBQ  C9   O17  SING  N  N   4  
EBQ  C7   O1   SING  N  N   5  
EBQ  O1   C1   SING  N  N   6  
EBQ  O2   C2   SING  N  N   7  
EBQ  C1   C2   SING  N  N   8  
EBQ  C1   O5   SING  N  N   9  
EBQ  C2   C3   SING  N  N  10  
EBQ  C3   O3   SING  N  N  11  
EBQ  C3   C4   SING  N  N  12  
EBQ  O5   C5   SING  N  N  13  
EBQ  C5   C4   SING  N  N  14  
EBQ  C5   C6   SING  N  N  15  
EBQ  C4   O4   SING  N  N  16  
EBQ  C6   O6   SING  N  N  17  
EBQ  O17  H1A  SING  N  N  18  
EBQ  C9   H2A  SING  N  N  19  
EBQ  C16  H3A  SING  N  N  20  
EBQ  C16  H4A  SING  N  N  21  
EBQ  C8   H5A  SING  N  N  22  
EBQ  C8   H6   SING  N  N  23  
EBQ  C7   H7   SING  N  N  24  
EBQ  C7   H8   SING  N  N  25  
EBQ  C1   H1   SING  N  N  26  
EBQ  C2   H2   SING  N  N  27  
EBQ  O2   HO2  SING  N  N  28  
EBQ  C3   H3   SING  N  N  29  
EBQ  O3   HO3  SING  N  N  30  
EBQ  C4   H4   SING  N  N  31  
EBQ  O4   HO4  SING  N  N  32  
EBQ  C5   H5   SING  N  N  33  
EBQ  C6   H61  SING  N  N  34  
EBQ  C6   H62  SING  N  N  35  
EBQ  O6   HO6  SING  N  N  36  
EBQ  C16  H20  SING  N  N  37  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
EBQ  InChI             InChI                 1.03   "InChI=1S/C10H20O7/c1-5(12)2-3-16-10-9(15)8(14)7(13)6(4-11)17-10/h5-15H,2-4H2,1H3/t5-,6+,7+,8-,9+,10-/m0/s1"  
EBQ  InChIKey          InChI                 1.03   IQTXPPTUXXJFDH-DLXYEPTOSA-N  
EBQ  SMILES_CANONICAL  CACTVS                3.385  "C[C@H](O)CCO[C@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1O"  
EBQ  SMILES            CACTVS                3.385  "C[CH](O)CCO[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1O"  
EBQ  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "C[C@@H](CCO[C@@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O)O)O)O"  
EBQ  SMILES            "OpenEye OEToolkits"  2.0.6  "CC(CCOC1C(C(C(C(O1)CO)O)O)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          EBQ
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.6
_pdbx_chem_comp_identifier.identifier       "(2~{R},3~{S},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-6-[(3~{S})-3-oxidanylbutoxy]oxane-3,4,5-triol"
#
_pdbx_chem_comp_related.comp_id            EBQ
_pdbx_chem_comp_related.related_comp_id    GLC
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  EBQ  C1   GLC  C1   "Carbohydrate core"  
 2  EBQ  C2   GLC  C2   "Carbohydrate core"  
 3  EBQ  C3   GLC  C3   "Carbohydrate core"  
 4  EBQ  C4   GLC  C4   "Carbohydrate core"  
 5  EBQ  C5   GLC  C5   "Carbohydrate core"  
 6  EBQ  C6   GLC  C6   "Carbohydrate core"  
 7  EBQ  O1   GLC  O1   "Carbohydrate core"  
 8  EBQ  O2   GLC  O2   "Carbohydrate core"  
 9  EBQ  O3   GLC  O3   "Carbohydrate core"  
10  EBQ  O4   GLC  O4   "Carbohydrate core"  
11  EBQ  O5   GLC  O5   "Carbohydrate core"  
12  EBQ  O6   GLC  O6   "Carbohydrate core"  
13  EBQ  H2   GLC  H2   "Carbohydrate core"  
14  EBQ  HO2  GLC  HO2  "Carbohydrate core"  
15  EBQ  H3   GLC  H3   "Carbohydrate core"  
16  EBQ  HO3  GLC  HO3  "Carbohydrate core"  
17  EBQ  H4   GLC  H4   "Carbohydrate core"  
18  EBQ  HO4  GLC  HO4  "Carbohydrate core"  
19  EBQ  H5   GLC  H5   "Carbohydrate core"  
20  EBQ  H61  GLC  H61  "Carbohydrate core"  
21  EBQ  H62  GLC  H62  "Carbohydrate core"  
22  EBQ  HO6  GLC  HO6  "Carbohydrate core"  
23  EBQ  H1   GLC  H1   "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
EBQ  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
EBQ  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
EBQ  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
EBQ  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
EBQ  "Create component"          2010-06-04  EBI   
EBQ  "Modify descriptor"         2011-06-04  RCSB  
EBQ  "Other modification"        2019-01-26  EBI   
EBQ  "Other modification"        2020-07-03  RCSB  
EBQ  "Modify parent residue"     2020-07-17  RCSB  
EBQ  "Modify name"               2020-07-17  RCSB  
EBQ  "Modify synonyms"           2020-07-17  RCSB  
EBQ  "Modify atom id"            2020-07-17  RCSB  
EBQ  "Modify component atom id"  2020-07-17  RCSB  
EBQ  "Modify leaving atom flag"  2020-07-17  RCSB  
##
