data_EJF
#

_chem_comp.id                                   EJF
_chem_comp.name                                 "N-[(2S)-3-methyl-1-[[(2S)-4-methyl-1-oxidanylidene-1-[[(2S)-1-oxidanylidene-3-[(3S)-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]pentan-2-yl]amino]-1-oxidanylidene-butan-2-yl]-1H-indole-2-carboxamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C27 H37 N5 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-01-07
_chem_comp.pdbx_modified_date                   2020-05-22
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       511.613
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    EJF
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6LNQ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
EJF  C10  C1   C  0  1  Y  N  N  -26.499  -10.482   4.687   -6.763  -0.023  -0.976  C10  EJF   1  
EJF  C13  C2   C  0  1  Y  N  N  -27.543   -6.809   5.469   -9.687   0.233   1.390  C13  EJF   2  
EJF  C15  C3   C  0  1  Y  N  N  -26.321   -7.869   7.223   -7.566   0.565   2.470  C15  EJF   3  
EJF  C20  C4   C  0  1  N  N  N  -24.825  -12.035   1.915   -1.363   2.609  -0.960  C20  EJF   4  
EJF  C21  C5   C  0  1  N  N  N  -23.821  -14.210   1.140   -0.296   1.480  -2.917  C21  EJF   5  
EJF  C24  C6   C  0  1  N  N  N  -25.281  -18.840   6.655    2.388  -3.095   1.094  C24  EJF   6  
EJF  C26  C7   C  0  1  N  N  N  -24.899  -17.560   7.380    2.266  -4.611   1.261  C26  EJF   7  
EJF  C28  C8   C  0  1  N  N  S  -21.311  -18.966   2.277    5.277  -0.595  -0.702  C28  EJF   8  
EJF  C02  C9   C  0  1  N  N  N  -23.397  -18.204   3.418    2.862  -0.902  -0.816  C02  EJF   9  
EJF  C03  C10  C  0  1  N  N  S  -24.150  -17.671   4.649    1.524  -1.111  -0.155  C03  EJF  10  
EJF  C05  C11  C  0  1  N  N  N  -24.229  -15.321   3.842   -0.695  -0.172  -0.516  C05  EJF  11  
EJF  C06  C12  C  0  1  N  N  S  -25.031  -14.103   3.402   -1.838   0.200  -1.425  C06  EJF  12  
EJF  C08  C13  C  0  1  N  N  N  -25.210  -12.603   5.724   -4.266   0.080  -1.257  C08  EJF  13  
EJF  C09  C14  C  0  1  Y  N  N  -25.787  -11.148   5.657   -5.511   0.147  -0.477  C09  EJF  14  
EJF  C11  C15  C  0  1  Y  N  N  -26.775   -9.137   5.204   -7.677   0.118   0.096  C11  EJF  15  
EJF  C12  C16  C  0  1  Y  N  N  -27.447   -8.000   4.694   -9.073   0.048   0.185  C12  EJF  16  
EJF  C14  C17  C  0  1  Y  N  N  -26.983   -6.760   6.721   -8.939   0.491   2.532  C14  EJF  17  
EJF  C16  C18  C  0  1  Y  N  N  -26.220   -9.079   6.437   -6.917   0.380   1.253  C16  EJF  18  
EJF  C19  C19  C  0  1  N  N  N  -24.174  -13.347   2.348   -1.561   1.564  -2.060  C19  EJF  19  
EJF  C23  C20  C  0  1  N  N  N  -25.146  -18.763   5.149    1.317  -2.602   0.118  C23  EJF  20  
EJF  C25  C21  C  0  1  N  N  N  -26.673  -19.360   7.077    2.193  -2.415   2.450  C25  EJF  21  
EJF  C29  C22  C  0  1  N  N  N  -20.845  -20.349   2.575    5.889  -1.883  -1.190  C29  EJF  22  
EJF  C31  C23  C  0  1  N  N  N  -20.091  -18.064   1.891    6.211   0.060   0.317  C31  EJF  23  
EJF  C32  C24  C  0  1  N  N  S  -20.418  -16.646   1.562    5.638   1.415   0.737  C32  EJF  24  
EJF  C33  C25  C  0  1  N  N  N  -21.003  -16.555   0.166    5.626   2.392  -0.462  C33  EJF  25  
EJF  C34  C26  C  0  1  N  N  N  -20.469  -15.445  -0.400    5.967   3.734   0.222  C34  EJF  26  
EJF  C36  C27  C  0  1  N  N  N  -19.068  -15.861   1.465    6.541   2.080   1.752  C36  EJF  27  
EJF  N04  N1   N  0  1  N  N  N  -24.927  -16.559   4.219    0.462  -0.624  -1.039  N04  EJF  28  
EJF  N07  N2   N  0  1  N  N  N  -24.949  -13.684   4.776   -3.079   0.267  -0.648  N07  EJF  29  
EJF  N17  N3   N  0  1  Y  N  N  -25.620  -10.316   6.702   -5.594   0.393   0.880  N17  EJF  30  
EJF  N27  N4   N  0  1  N  N  N  -21.951  -18.477   3.479    3.985  -0.877  -0.071  N27  EJF  31  
EJF  N35  N5   N  0  1  N  N  N  -19.105  -15.184   0.308    6.714   3.377   1.434  N35  EJF  32  
EJF  O01  O1   O  0  1  N  N  N  -23.978  -18.380   2.395    2.928  -0.756  -2.018  O01  EJF  33  
EJF  O18  O2   O  0  1  N  N  N  -24.900  -12.912   6.819   -4.308  -0.144  -2.452  O18  EJF  34  
EJF  O22  O3   O  0  1  N  N  N  -23.054  -15.262   3.995   -0.817  -0.065   0.686  O22  EJF  35  
EJF  O30  O4   O  0  1  N  N  N  -21.036  -21.196   1.809    5.306  -2.928  -1.027  O30  EJF  36  
EJF  O37  O5   O  0  1  N  N  N  -18.196  -15.886   2.246    7.036   1.525   2.710  O37  EJF  37  
EJF  H1   H1   H  0  1  N  N  N  -26.798  -10.875   3.726   -7.016  -0.226  -2.006  H1   EJF  38  
EJF  H2   H2   H  0  1  N  N  N  -28.056   -5.945   5.072  -10.763   0.178   1.457  H2   EJF  39  
EJF  H3   H3   H  0  1  N  N  N  -25.878   -7.830   8.207   -6.993   0.766   3.364  H3   EJF  40  
EJF  H4   H4   H  0  1  N  N  N  -25.068  -11.435   2.804   -1.165   3.580  -1.413  H4   EJF  41  
EJF  H5   H5   H  0  1  N  N  N  -24.129  -11.475   1.274   -2.264   2.669  -0.350  H5   EJF  42  
EJF  H6   H6   H  0  1  N  N  N  -25.747  -12.251   1.355   -0.518   2.321  -0.334  H6   EJF  43  
EJF  H7   H7   H  0  1  N  N  N  -23.355  -15.146   1.481   -0.398   0.668  -3.637  H7   EJF  44  
EJF  H8   H8   H  0  1  N  N  N  -24.736  -14.441   0.575   -0.154   2.421  -3.449  H8   EJF  45  
EJF  H9   H9   H  0  1  N  N  N  -23.118  -13.665   0.493    0.565   1.291  -2.276  H9   EJF  46  
EJF  H10  H10  H  0  1  N  N  N  -24.563  -19.604   6.987    3.375  -2.851   0.703  H10  EJF  47  
EJF  H11  H11  H  0  1  N  N  N  -25.025  -17.700   8.464    1.278  -4.855   1.652  H11  EJF  48  
EJF  H12  H12  H  0  1  N  N  N  -23.849  -17.314   7.162    2.404  -5.095   0.295  H12  EJF  49  
EJF  H13  H13  H  0  1  N  N  N  -25.546  -16.739   7.039    3.028  -4.962   1.957  H13  EJF  50  
EJF  H14  H14  H  0  1  N  N  N  -22.023  -18.982   1.439    5.129   0.080  -1.546  H14  EJF  51  
EJF  H15  H15  H  0  1  N  N  N  -23.444  -17.404   5.449    1.494  -0.562   0.786  H15  EJF  52  
EJF  H16  H16  H  0  1  N  N  N  -26.043  -14.345   3.045   -1.940  -0.551  -2.207  H16  EJF  53  
EJF  H17  H17  H  0  1  N  N  N  -27.890   -8.036   3.710   -9.663  -0.153  -0.697  H17  EJF  54  
EJF  H18  H18  H  0  1  N  N  N  -27.058   -5.860   7.313   -9.440   0.635   3.478  H18  EJF  55  
EJF  H19  H19  H  0  1  N  N  N  -23.227  -13.086   2.842   -2.406   1.852  -2.687  H19  EJF  56  
EJF  H20  H20  H  0  1  N  N  N  -26.137  -18.545   4.725    1.395  -3.157  -0.817  H20  EJF  57  
EJF  H21  H21  H  0  1  N  N  N  -24.798  -19.740   4.784    0.330  -2.758   0.552  H21  EJF  58  
EJF  H22  H22  H  0  1  N  N  N  -26.732  -19.402   8.175    1.233  -2.714   2.872  H22  EJF  59  
EJF  H23  H23  H  0  1  N  N  N  -27.449  -18.682   6.694    2.995  -2.713   3.125  H23  EJF  60  
EJF  H24  H24  H  0  1  N  N  N  -26.829  -20.367   6.663    2.211  -1.332   2.320  H24  EJF  61  
EJF  H25  H25  H  0  1  N  N  N  -20.331  -20.561   3.501    6.849  -1.871  -1.686  H25  EJF  62  
EJF  H26  H26  H  0  1  N  N  N  -19.603  -18.512   1.013    6.301  -0.583   1.192  H26  EJF  63  
EJF  H27  H27  H  0  1  N  N  N  -19.390  -18.062   2.738    7.194   0.204  -0.131  H27  EJF  64  
EJF  H28  H28  H  0  1  N  N  N  -21.084  -16.192   2.311    4.633   1.295   1.141  H28  EJF  65  
EJF  H29  H29  H  0  1  N  N  N  -22.098  -16.467   0.217    6.387   2.122  -1.193  H29  EJF  66  
EJF  H30  H30  H  0  1  N  N  N  -20.734  -17.447  -0.418    4.639   2.429  -0.924  H30  EJF  67  
EJF  H31  H31  H  0  1  N  N  N  -20.311  -15.608  -1.476    6.585   4.346  -0.435  H31  EJF  68  
EJF  H32  H32  H  0  1  N  N  N  -21.141  -14.586  -0.254    5.053   4.267   0.486  H32  EJF  69  
EJF  H33  H33  H  0  1  N  N  N  -25.924  -16.618   4.174    0.591  -0.628  -2.000  H33  EJF  70  
EJF  H34  H34  H  0  1  N  N  N  -24.551  -14.442   5.293   -3.045   0.445   0.305  H34  EJF  71  
EJF  H35  H35  H  0  1  N  N  N  -25.137  -10.548   7.546   -4.842   0.550   1.472  H35  EJF  72  
EJF  H36  H36  H  0  1  N  N  N  -21.431  -18.330   4.320    3.938  -1.045   0.883  H36  EJF  73  
EJF  H37  H37  H  0  1  N  N  N  -18.372  -14.603  -0.045    7.261   3.996   1.942  H37  EJF  74  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
EJF  C34  C33  SING  N  N   1  
EJF  C34  N35  SING  N  N   2  
EJF  C33  C32  SING  N  N   3  
EJF  N35  C36  SING  N  N   4  
EJF  C21  C19  SING  N  N   5  
EJF  C36  C32  SING  N  N   6  
EJF  C36  O37  DOUB  N  N   7  
EJF  C32  C31  SING  N  N   8  
EJF  O30  C29  DOUB  N  N   9  
EJF  C31  C28  SING  N  N  10  
EJF  C20  C19  SING  N  N  11  
EJF  C28  C29  SING  N  N  12  
EJF  C28  N27  SING  N  N  13  
EJF  C19  C06  SING  N  N  14  
EJF  O01  C02  DOUB  N  N  15  
EJF  C06  C05  SING  N  N  16  
EJF  C06  N07  SING  N  N  17  
EJF  C02  N27  SING  N  N  18  
EJF  C02  C03  SING  N  N  19  
EJF  C05  O22  DOUB  N  N  20  
EJF  C05  N04  SING  N  N  21  
EJF  N04  C03  SING  N  N  22  
EJF  C03  C23  SING  N  N  23  
EJF  C10  C11  SING  Y  N  24  
EJF  C10  C09  DOUB  Y  N  25  
EJF  C12  C11  DOUB  Y  N  26  
EJF  C12  C13  SING  Y  N  27  
EJF  N07  C08  SING  N  N  28  
EJF  C23  C24  SING  N  N  29  
EJF  C11  C16  SING  Y  N  30  
EJF  C13  C14  DOUB  Y  N  31  
EJF  C09  C08  SING  N  N  32  
EJF  C09  N17  SING  Y  N  33  
EJF  C08  O18  DOUB  N  N  34  
EJF  C16  N17  SING  Y  N  35  
EJF  C16  C15  DOUB  Y  N  36  
EJF  C24  C25  SING  N  N  37  
EJF  C24  C26  SING  N  N  38  
EJF  C14  C15  SING  Y  N  39  
EJF  C10  H1   SING  N  N  40  
EJF  C13  H2   SING  N  N  41  
EJF  C15  H3   SING  N  N  42  
EJF  C20  H4   SING  N  N  43  
EJF  C20  H5   SING  N  N  44  
EJF  C20  H6   SING  N  N  45  
EJF  C21  H7   SING  N  N  46  
EJF  C21  H8   SING  N  N  47  
EJF  C21  H9   SING  N  N  48  
EJF  C24  H10  SING  N  N  49  
EJF  C26  H11  SING  N  N  50  
EJF  C26  H12  SING  N  N  51  
EJF  C26  H13  SING  N  N  52  
EJF  C28  H14  SING  N  N  53  
EJF  C03  H15  SING  N  N  54  
EJF  C06  H16  SING  N  N  55  
EJF  C12  H17  SING  N  N  56  
EJF  C14  H18  SING  N  N  57  
EJF  C19  H19  SING  N  N  58  
EJF  C23  H20  SING  N  N  59  
EJF  C23  H21  SING  N  N  60  
EJF  C25  H22  SING  N  N  61  
EJF  C25  H23  SING  N  N  62  
EJF  C25  H24  SING  N  N  63  
EJF  C29  H25  SING  N  N  64  
EJF  C31  H26  SING  N  N  65  
EJF  C31  H27  SING  N  N  66  
EJF  C32  H28  SING  N  N  67  
EJF  C33  H29  SING  N  N  68  
EJF  C33  H30  SING  N  N  69  
EJF  C34  H31  SING  N  N  70  
EJF  C34  H32  SING  N  N  71  
EJF  N04  H33  SING  N  N  72  
EJF  N07  H34  SING  N  N  73  
EJF  N17  H35  SING  N  N  74  
EJF  N27  H36  SING  N  N  75  
EJF  N35  H37  SING  N  N  76  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
EJF  InChI             InChI                 1.03   "InChI=1S/C27H37N5O5/c1-15(2)11-21(25(35)29-19(14-33)12-18-9-10-28-24(18)34)31-27(37)23(16(3)4)32-26(36)22-13-17-7-5-6-8-20(17)30-22/h5-8,13-16,18-19,21,23,30H,9-12H2,1-4H3,(H,28,34)(H,29,35)(H,31,37)(H,32,36)/t18-,19-,21-,23-/m0/s1"  
EJF  InChIKey          InChI                 1.03   BRIFXLOFHLLUBS-YDWJEQILSA-N  
EJF  SMILES_CANONICAL  CACTVS                3.385  "CC(C)C[C@H](NC(=O)[C@@H](NC(=O)c1[nH]c2ccccc2c1)C(C)C)C(=O)N[C@@H](C[C@@H]3CCNC3=O)C=O"  
EJF  SMILES            CACTVS                3.385  "CC(C)C[CH](NC(=O)[CH](NC(=O)c1[nH]c2ccccc2c1)C(C)C)C(=O)N[CH](C[CH]3CCNC3=O)C=O"  
EJF  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C=O)NC(=O)[C@H](C(C)C)NC(=O)c2cc3ccccc3[nH]2"  
EJF  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)CC(C(=O)NC(CC1CCNC1=O)C=O)NC(=O)C(C(C)C)NC(=O)c2cc3ccccc3[nH]2"  
#
_pdbx_chem_comp_identifier.comp_id          EJF
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "~{N}-[(2~{S})-3-methyl-1-[[(2~{S})-4-methyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanylidene-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]pentan-2-yl]amino]-1-oxidanylidene-butan-2-yl]-1~{H}-indole-2-carboxamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
EJF  "Create component"  2020-01-07  PDBJ  
EJF  "Initial release"   2020-05-27  RCSB  
##
