data_F9D
#

_chem_comp.id                                   F9D
_chem_comp.name                                 "(2R)-2-aminopent-4-ynoic acid"
_chem_comp.type                                 "D-peptide linking"
_chem_comp.pdbx_type                            ATOMP
_chem_comp.formula                              "C5 H7 N O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-03-16
_chem_comp.pdbx_modified_date                   2019-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       113.115
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    F9D
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6CNU
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
F9D  C    C1   C  0  1  N  N  N  18.972  1.939  79.819   1.473   0.120   0.042  C    F9D   1  
F9D  O    O1   O  0  1  N  N  N  19.210  1.040  80.616   2.115  -0.706  -0.562  O    F9D   2  
F9D  CA   C2   C  0  1  N  N  R  20.070  2.329  78.855   0.034  -0.156   0.396  CA   F9D   3  
F9D  N    N1   N  0  1  N  N  N  19.790  3.594  78.173  -0.214  -1.603   0.346  N    F9D   4  
F9D  CB   C3   C  0  1  N  N  N  20.292  1.210  77.847  -0.882   0.554  -0.603  CB   F9D   5  
F9D  CG   C4   C  0  1  N  N  N  19.166  1.066  76.947  -2.284   0.385  -0.189  CG   F9D   6  
F9D  CD   C5   C  0  1  N  N  N  18.181  0.906  76.185  -3.403   0.250   0.142  CD   F9D   7  
F9D  HA   H2   H  0  1  N  N  N  20.998  2.445  79.433  -0.170   0.213   1.401  HA   F9D   8  
F9D  H    H3   H  0  1  N  N  N  19.648  4.315  78.852  -0.032  -1.969  -0.576  H    F9D   9  
F9D  H2   H4   H  0  1  N  N  N  20.564  3.836  77.588   0.332  -2.088   1.042  H2   F9D  10  
F9D  HB2  H6   H  0  1  N  N  N  20.437  0.265  78.390  -0.637   1.615  -0.630  HB2  F9D  11  
F9D  HB3  H7   H  0  1  N  N  N  21.193  1.435  77.257  -0.742   0.123  -1.594  HB3  F9D  12  
F9D  HG   H8   H  0  1  N  N  N  17.349  0.771  75.542  -4.403   0.130   0.438  HG   F9D  13  
F9D  OXT  OXT  O  0  1  N  Y  N  17.875  2.523  79.938   2.042   1.280   0.403  OXT  F9D  14  
F9D  HXT  H1   H  0  1  N  Y  N  17.393  2.147  80.665   2.969   1.410   0.157  HXT  F9D  15  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
F9D  CD   CG   TRIP  N  N   1  
F9D  CG   CB   SING  N  N   2  
F9D  CB   CA   SING  N  N   3  
F9D  N    CA   SING  N  N   4  
F9D  CA   C    SING  N  N   5  
F9D  C    O    DOUB  N  N   6  
F9D  CA   HA   SING  N  N   7  
F9D  N    H    SING  N  N   8  
F9D  N    H2   SING  N  N   9  
F9D  CB   HB2  SING  N  N  10  
F9D  CB   HB3  SING  N  N  11  
F9D  CD   HG   SING  N  N  12  
F9D  C    OXT  SING  N  N  13  
F9D  OXT  HXT  SING  N  N  14  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
F9D  SMILES            ACDLabs               12.01  "C(=O)(O)C(N)CC#C"  
F9D  InChI             InChI                 1.03   "InChI=1S/C5H7NO2/c1-2-3-4(6)5(7)8/h1,4H,3,6H2,(H,7,8)/t4-/m1/s1"  
F9D  InChIKey          InChI                 1.03   DGYHPLMPMRKMPD-SCSAIBSYSA-N  
F9D  SMILES_CANONICAL  CACTVS                3.385  "N[C@H](CC#C)C(O)=O"  
F9D  SMILES            CACTVS                3.385  "N[CH](CC#C)C(O)=O"  
F9D  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "C#CC[C@H](C(=O)O)N"  
F9D  SMILES            "OpenEye OEToolkits"  2.0.6  "C#CCC(C(=O)O)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
F9D  "SYSTEMATIC NAME"  ACDLabs               12.01  "(2R)-2-aminopent-4-ynoic acid"  
F9D  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "(2~{R})-2-azanylpent-4-ynoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
F9D  "Create component"  2018-03-16  RCSB  
F9D  "Initial release"   2019-03-06  RCSB  
##
