data_GPL
# 
_chem_comp.id                                    GPL 
_chem_comp.name                                  
;LYSINE GUANOSINE-5'-MONOPHOSPHATE
;
_chem_comp.type                                  "L-PEPTIDE LINKING" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C16 H26 N7 O9 P" 
_chem_comp.mon_nstd_parent_comp_id               LYS 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        491.393 
_chem_comp.one_letter_code                       K 
_chem_comp.three_letter_code                     GPL 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1CKN 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
GPL P      P    P 0 1 N N S 26.889 27.319 49.016 -2.195 2.799  -0.642 P      GPL 1  
GPL O1P    O1P  O 0 1 N N N 26.415 27.319 47.586 -2.864 1.977  -1.712 O1P    GPL 2  
GPL O2P    O2P  O 0 1 N N N 27.341 28.619 49.548 -3.288 3.538  0.307  O2P    GPL 3  
GPL "O5'"  O5*  O 0 1 N N N 25.716 26.715 49.959 -1.405 1.865  0.430  "O5'"  GPL 4  
GPL "C5'"  C5*  C 0 1 N N N 24.915 25.537 49.665 -0.881 2.428  1.621  "C5'"  GPL 5  
GPL "C4'"  C4*  C 0 1 N N R 25.300 24.682 48.485 -0.199 1.333  2.429  "C4'"  GPL 6  
GPL "O4'"  O4*  O 0 1 N N N 26.631 24.140 48.410 0.895  0.803  1.646  "O4'"  GPL 7  
GPL "C3'"  C3*  C 0 1 N N S 24.421 23.514 48.302 0.409  1.846  3.730  "C3'"  GPL 8  
GPL "O3'"  O3*  O 0 1 N N N 23.122 23.892 47.913 0.470  0.769  4.665  "O3'"  GPL 9  
GPL "C2'"  C2*  C 0 1 N N R 25.094 22.792 47.204 1.814  2.225  3.303  "C2'"  GPL 10 
GPL "O2'"  O2*  O 0 1 N N N 24.766 23.442 45.977 2.731  2.249  4.377  "O2'"  GPL 11 
GPL "C1'"  C1*  C 0 1 N N R 26.569 23.045 47.470 2.135  1.120  2.308  "C1'"  GPL 12 
GPL N9     N9   N 0 1 Y N N 27.294 21.851 47.858 3.143  1.487  1.316  N9     GPL 13 
GPL C8     C8   C 0 1 Y N N 28.518 21.447 47.468 3.085  2.565  0.464  C8     GPL 14 
GPL N7     N7   N 0 1 Y N N 28.940 20.336 47.988 4.141  2.642  -0.322 N7     GPL 15 
GPL C5     C5   C 0 1 Y N N 27.862 19.973 48.816 4.902  1.571  0.044  C5     GPL 16 
GPL C6     C6   C 0 1 N N N 27.686 18.815 49.631 6.173  1.152  -0.478 C6     GPL 17 
GPL O6     O6   O 0 1 N N N 28.476 17.905 49.815 6.769  1.739  -1.372 O6     GPL 18 
GPL N1     N1   N 0 1 N N N 26.457 18.835 50.312 6.621  -0.005 0.173  N1     GPL 19 
GPL C2     C2   C 0 1 N N N 25.493 19.829 50.171 5.930  -0.682 1.206  C2     GPL 20 
GPL N2     N2   N 0 1 N N N 24.345 19.716 50.871 6.557  -1.796 1.700  N2     GPL 21 
GPL N3     N3   N 0 1 N N N 25.682 20.900 49.384 4.766  -0.275 1.665  N3     GPL 22 
GPL C4     C4   C 0 1 Y N N 26.883 20.894 48.720 4.316  0.841  1.050  C4     GPL 23 
GPL N      N    N 0 1 N N N 33.321 22.027 48.725 3.498  4.366  -6.005 N      GPL 24 
GPL CA     CA   C 0 1 N N S 31.990 22.514 48.399 3.817  5.285  -4.943 CA     GPL 25 
GPL CB     CB   C 0 1 N N N 31.703 23.786 49.195 2.599  5.630  -4.083 CB     GPL 26 
GPL CG     CG   C 0 1 N N N 30.290 24.327 49.066 1.904  4.420  -3.445 CG     GPL 27 
GPL CD     CD   C 0 1 N N N 30.179 25.484 50.045 0.659  4.796  -2.635 CD     GPL 28 
GPL CE     CE   C 0 1 N N N 28.742 25.983 50.129 0.004  3.593  -1.953 CE     GPL 29 
GPL NZ     NZ   N 0 1 N N N 28.310 26.527 48.868 -1.155 3.981  -1.159 NZ     GPL 30 
GPL C      C    C 0 1 N N N 31.967 22.794 46.900 4.881  4.614  -4.097 C      GPL 31 
GPL O      O    O 0 1 N N N 32.467 23.833 46.449 5.283  3.467  -4.246 O      GPL 32 
GPL OXT    OXT  O 0 1 N Y N ?      ?      ?      5.319  5.424  -3.097 OXT    GPL 33 
GPL HOP2   2HOP H 0 0 N N N 27.639 28.619 50.449 -4.238 3.324  0.184  HOP2   GPL 34 
GPL "H5'1" 1H5* H 0 0 N N N 24.865 24.896 50.576 -0.165 3.211  1.355  "H5'1" GPL 35 
GPL "H5'2" 2H5* H 0 0 N N N 23.847 25.841 49.558 -1.702 2.873  2.192  "H5'2" GPL 36 
GPL "H4'"  H4*  H 0 1 N N N 25.205 25.464 47.696 -0.908 0.517  2.602  "H4'"  GPL 37 
GPL "H3'"  H3*  H 0 1 N N N 24.286 22.918 49.234 -0.145 2.663  4.199  "H3'"  GPL 38 
GPL "HO3'" *HO3 H 0 0 N N N 22.555 23.138 47.795 -0.447 0.539  4.878  "HO3'" GPL 39 
GPL "H2'"  H2*  H 0 1 N N N 24.817 21.713 47.147 1.812  3.206  2.815  "H2'"  GPL 40 
GPL "HO2'" *HO2 H 0 0 N N N 25.199 22.977 45.270 2.967  1.326  4.577  "HO2'" GPL 41 
GPL "H1'"  H1*  H 0 1 N N N 27.105 23.336 46.536 2.521  0.216  2.791  "H1'"  GPL 42 
GPL H8     H8   H 0 1 N N N 29.148 22.002 46.753 2.250  3.253  0.465  H8     GPL 43 
GPL HN1    HN1  H 0 1 N N N 26.249 18.071 50.956 7.515  -0.390 -0.120 HN1    GPL 44 
GPL HN21   1HN2 H 0 0 N N N 23.638 20.444 50.767 6.493  -2.641 1.181  HN21   GPL 45 
GPL HN22   2HN2 H 0 0 N N N 24.569 19.609 51.860 7.051  -1.717 2.558  HN22   GPL 46 
GPL H      1HN  H 0 1 N N N 33.512 21.177 48.193 4.166  4.222  -6.744 H      GPL 47 
GPL H2     2HN  H 0 1 N Y N 33.446 21.890 49.728 2.551  4.041  -6.103 H2     GPL 48 
GPL HA     HA   H 0 1 N N N 31.206 21.764 48.660 4.248  6.169  -5.423 HA     GPL 49 
GPL HB2    1HB  H 0 1 N N N 31.957 23.630 50.269 2.903  6.312  -3.278 HB2    GPL 50 
GPL HB3    2HB  H 0 1 N N N 32.442 24.578 48.930 1.869  6.183  -4.687 HB3    GPL 51 
GPL HG2    1HG  H 0 1 N N N 30.017 24.605 48.021 2.626  3.928  -2.780 HG2    GPL 52 
GPL HG3    2HG  H 0 1 N N N 29.504 23.549 49.211 1.647  3.690  -4.221 HG3    GPL 53 
GPL HD2    1HD  H 0 1 N N N 30.582 25.215 51.049 -0.078 5.289  -3.281 HD2    GPL 54 
GPL HD3    2HD  H 0 1 N N N 30.888 26.307 49.794 0.937  5.522  -1.862 HD3    GPL 55 
GPL HE2    1HE  H 0 1 N N N 28.050 25.186 50.491 -0.303 2.857  -2.704 HE2    GPL 56 
GPL HE3    2HE  H 0 1 N N N 28.608 26.714 50.959 0.738  3.107  -1.299 HE3    GPL 57 
GPL HZ     HNZ  H 0 1 N N N 29.027 27.120 48.451 -0.845 4.638  -0.444 HZ     GPL 58 
GPL HXT    HXT  H 0 1 N Y N -0.014 0.174  -0.933 5.985  5.025  -2.497 HXT    GPL 59 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
GPL P     O1P    DOUB N N 1  
GPL P     O2P    SING N N 2  
GPL P     "O5'"  SING N N 3  
GPL P     NZ     SING N N 4  
GPL O2P   HOP2   SING N N 5  
GPL "O5'" "C5'"  SING N N 6  
GPL "C5'" "C4'"  SING N N 7  
GPL "C5'" "H5'1" SING N N 8  
GPL "C5'" "H5'2" SING N N 9  
GPL "C4'" "O4'"  SING N N 10 
GPL "C4'" "C3'"  SING N N 11 
GPL "C4'" "H4'"  SING N N 12 
GPL "O4'" "C1'"  SING N N 13 
GPL "C3'" "O3'"  SING N N 14 
GPL "C3'" "C2'"  SING N N 15 
GPL "C3'" "H3'"  SING N N 16 
GPL "O3'" "HO3'" SING N N 17 
GPL "C2'" "O2'"  SING N N 18 
GPL "C2'" "C1'"  SING N N 19 
GPL "C2'" "H2'"  SING N N 20 
GPL "O2'" "HO2'" SING N N 21 
GPL "C1'" N9     SING N N 22 
GPL "C1'" "H1'"  SING N N 23 
GPL N9    C8     SING Y N 24 
GPL N9    C4     SING Y N 25 
GPL C8    N7     DOUB Y N 26 
GPL C8    H8     SING N N 27 
GPL N7    C5     SING Y N 28 
GPL C5    C6     SING N N 29 
GPL C5    C4     DOUB Y N 30 
GPL C6    O6     DOUB N N 31 
GPL C6    N1     SING N N 32 
GPL N1    C2     SING N N 33 
GPL N1    HN1    SING N N 34 
GPL C2    N2     SING N N 35 
GPL C2    N3     DOUB N N 36 
GPL N2    HN21   SING N N 37 
GPL N2    HN22   SING N N 38 
GPL N3    C4     SING N N 39 
GPL N     CA     SING N N 40 
GPL N     H      SING N N 41 
GPL N     H2     SING N N 42 
GPL CA    CB     SING N N 43 
GPL CA    C      SING N N 44 
GPL CA    HA     SING N N 45 
GPL CB    CG     SING N N 46 
GPL CB    HB2    SING N N 47 
GPL CB    HB3    SING N N 48 
GPL CG    CD     SING N N 49 
GPL CG    HG2    SING N N 50 
GPL CG    HG3    SING N N 51 
GPL CD    CE     SING N N 52 
GPL CD    HD2    SING N N 53 
GPL CD    HD3    SING N N 54 
GPL CE    NZ     SING N N 55 
GPL CE    HE2    SING N N 56 
GPL CE    HE3    SING N N 57 
GPL NZ    HZ     SING N N 58 
GPL C     O      DOUB N N 59 
GPL C     OXT    SING N N 60 
GPL OXT   HXT    SING N N 61 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
GPL SMILES           ACDLabs              10.04 "O=C(O)C(N)CCCCNP(=O)(O)OCC3OC(n2cnc1c2N=C(N)NC1=O)C(O)C3O" 
GPL SMILES_CANONICAL CACTVS               3.341 "N[C@@H](CCCCN[P@@](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3C(=O)NC(=Nc23)N)C(O)=O" 
GPL SMILES           CACTVS               3.341 "N[CH](CCCCN[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3C(=O)NC(=Nc23)N)C(O)=O" 
GPL SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(NCCCC[C@@H](C(=O)O)N)O)O)O)N=C(NC2=O)N" 
GPL SMILES           "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1C3C(C(C(O3)COP(=O)(NCCCCC(C(=O)O)N)O)O)O)N=C(NC2=O)N" 
GPL InChI            InChI                1.03  
"InChI=1S/C16H26N7O9P/c17-7(15(27)28)3-1-2-4-20-33(29,30)31-5-8-10(24)11(25)14(32-8)23-6-19-9-12(23)21-16(18)22-13(9)26/h6-8,10-11,14,24-25H,1-5,17H2,(H,27,28)(H2,20,29,30)(H3,18,21,22,26)/t7-,8+,10+,11+,14+/m0/s1" 
GPL InChIKey         InChI                1.03  FYWIJTNESKGCIU-TWBCTODHSA-N 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
GPL "SYSTEMATIC NAME" ACDLabs              10.04 "(2S)-2-amino-6-{[(S)-{[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methoxy}(hydroxy)phosphoryl]amino}hexanoic acid (non-preferred name)" 
GPL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-amino-6-[[[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]amino]hexanoic acid"                                                
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
GPL "Create component"  1999-07-08 RCSB 
GPL "Modify descriptor" 2011-06-04 RCSB 
# 
