data_IFO
# 
_chem_comp.id                                    IFO 
_chem_comp.name                                  "(3S)-4-[[2,4-bis(fluoranyl)phenyl]methoxy]-2-methyl-4-oxidanylidene-3-[[(Z)-3-oxidanylidene-2-(2-phenoxyethanoylamino)prop-1-enyl]amino]butane-2-sulfinic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H24 F2 N2 O7 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "penicillin derivative (open form)" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-03-17 
_chem_comp.pdbx_modified_date                    2022-08-22 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        510.508 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     IFO 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7Z59 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
IFO O6  O1  O 0 1 N N N -3.956  -22.396 -20.646 1.404  0.856  1.453  O6  IFO 1  
IFO C6  C1  C 0 1 N N N -7.323  -28.686 -20.389 -2.294 -2.559 -1.219 C6  IFO 2  
IFO C7  C2  C 0 1 N N N -7.265  -29.838 -19.452 -3.031 -3.723 -1.501 C7  IFO 3  
IFO C8  C3  C 0 1 N N N -9.307  -27.329 -20.782 -3.988 -1.025 -0.526 C8  IFO 4  
IFO C5  C4  C 0 1 N N N -6.350  -27.668 -20.512 -0.984 -2.651 -0.874 C5  IFO 5  
IFO C4  C5  C 0 1 N N S -5.207  -25.948 -21.921 1.145  -1.619 -0.227 C4  IFO 6  
IFO C1  C6  C 0 1 N N N -6.232  -23.586 -22.258 0.477  -2.979 1.760  C1  IFO 7  
IFO C2  C7  C 0 1 N N N -5.428  -24.528 -21.354 1.264  -1.753 1.293  C2  IFO 8  
IFO O2  O2  O 0 1 N N N -8.942  -26.402 -20.068 -4.367 -1.836 0.294  O2  IFO 9  
IFO C3  C8  C 0 1 N N N -6.022  -24.576 -19.944 2.736  -1.914 1.677  C3  IFO 10 
IFO N1  N1  N 0 1 N N N -6.318  -26.837 -21.594 -0.268 -1.520 -0.600 N1  IFO 11 
IFO O1  O3  O 0 1 N N N -6.298  -30.551 -19.313 -4.222 -3.648 -1.731 O1  IFO 12 
IFO N2  N2  N 0 1 N N N -8.586  -28.462 -20.995 -2.915 -1.296 -1.295 N2  IFO 13 
IFO C9  C9  C 0 1 N N N -10.654 -27.252 -21.447 -4.717 0.284  -0.683 C9  IFO 14 
IFO O3  O4  O 0 1 N N N -10.652 -28.230 -22.477 -5.809 0.335  0.237  O3  IFO 15 
IFO C10 C10 C 0 1 Y N N -11.834 -28.494 -23.100 -6.575 1.458  0.225  C10 IFO 16 
IFO C11 C11 C 0 1 Y N N -12.987 -27.759 -22.885 -7.651 1.574  1.092  C11 IFO 17 
IFO C12 C12 C 0 1 Y N N -14.146 -28.106 -23.563 -8.428 2.716  1.077  C12 IFO 18 
IFO C13 C13 C 0 1 Y N N -14.165 -29.182 -24.422 -8.133 3.743  0.200  C13 IFO 19 
IFO C14 C14 C 0 1 Y N N -13.019 -29.916 -24.613 -7.060 3.630  -0.665 C14 IFO 20 
IFO C15 C15 C 0 1 Y N N -11.846 -29.580 -23.953 -6.277 2.492  -0.650 C15 IFO 21 
IFO C16 C16 C 0 1 N N N -4.932  -25.921 -23.423 1.873  -0.380 -0.681 C16 IFO 22 
IFO O4  O5  O 0 1 N N N -5.576  -26.502 -24.246 1.273  0.496  -1.257 O4  IFO 23 
IFO O5  O6  O 0 1 N N N -3.846  -25.206 -23.716 3.188  -0.250 -0.446 O5  IFO 24 
IFO C17 C17 C 0 1 N N N -2.600  -25.842 -23.361 3.824  0.969  -0.911 C17 IFO 25 
IFO C18 C18 C 0 1 Y N N -1.409  -25.169 -23.963 5.289  0.937  -0.560 C18 IFO 26 
IFO C19 C19 C 0 1 Y N N -0.140  -25.494 -23.492 5.817  -0.153 0.106  C19 IFO 27 
IFO C20 C20 C 0 1 Y N N 0.991   -24.903 -24.022 7.160  -0.183 0.429  C20 IFO 28 
IFO C21 C21 C 0 1 Y N N 0.822   -24.006 -25.034 7.980  0.879  0.084  C21 IFO 29 
IFO F1  F1  F 0 1 N N N 1.925   -23.412 -25.554 9.293  0.849  0.400  F1  IFO 30 
IFO C22 C22 C 0 1 Y N N -0.408  -23.657 -25.543 7.453  1.971  -0.583 C22 IFO 31 
IFO C23 C23 C 0 1 Y N N -1.511  -24.263 -24.982 6.108  1.998  -0.911 C23 IFO 32 
IFO F2  F2  F 0 1 N N N -2.742  -23.933 -25.448 5.592  3.063  -1.562 F2  IFO 33 
IFO S1  S1  S 0 1 N N N -3.753  -23.781 -21.139 0.591  -0.265 2.084  S1  IFO 34 
IFO O7  O7  O 0 1 N N N -2.943  -24.588 -20.032 -0.721 -0.022 1.597  O7  IFO 35 
IFO H1  H1  H 0 1 N N N -3.560  -22.304 -19.787 1.169  1.739  1.770  H1  IFO 36 
IFO H3  H3  H 0 1 N N N -8.141  -30.052 -18.858 -2.538 -4.684 -1.514 H3  IFO 37 
IFO H4  H4  H 0 1 N N N -5.614  -27.545 -19.731 -0.508 -3.619 -0.815 H4  IFO 38 
IFO H5  H5  H 0 1 N N N -4.304  -26.347 -21.436 1.586  -2.495 -0.704 H5  IFO 39 
IFO H6  H6  H 0 1 N N N -6.334  -22.606 -21.769 0.882  -3.873 1.285  H6  IFO 40 
IFO H7  H7  H 0 1 N N N -5.709  -23.464 -23.218 0.562  -3.074 2.843  H7  IFO 41 
IFO H8  H8  H 0 1 N N N -7.230  -24.013 -22.436 -0.571 -2.864 1.486  H8  IFO 42 
IFO H9  H9  H 0 1 N N N -5.427  -25.258 -19.318 3.296  -1.040 1.344  H9  IFO 43 
IFO H10 H10 H 0 1 N N N -6.006  -23.567 -19.505 2.820  -2.008 2.760  H10 IFO 44 
IFO H11 H11 H 0 1 N N N -7.060  -24.937 -19.996 3.140  -2.807 1.202  H11 IFO 45 
IFO H12 H12 H 0 1 N N N -8.960  -29.164 -21.602 -2.571 -0.622 -1.902 H12 IFO 46 
IFO H13 H13 H 0 1 N N N -10.810 -26.250 -21.874 -4.032 1.108  -0.479 H13 IFO 47 
IFO H14 H14 H 0 1 N N N -11.450 -27.468 -20.719 -5.095 0.370  -1.701 H14 IFO 48 
IFO H15 H15 H 0 1 N N N -12.984 -26.926 -22.198 -7.883 0.772  1.777  H15 IFO 49 
IFO H16 H16 H 0 1 N N N -15.045 -27.525 -23.415 -9.267 2.807  1.752  H16 IFO 50 
IFO H17 H17 H 0 1 N N N -15.074 -29.447 -24.942 -8.741 4.636  0.191  H17 IFO 51 
IFO H18 H18 H 0 1 N N N -13.032 -30.763 -25.283 -6.832 4.433  -1.350 H18 IFO 52 
IFO H19 H19 H 0 1 N N N -10.950 -30.163 -24.105 -5.439 2.404  -1.326 H19 IFO 53 
IFO H20 H20 H 0 1 N N N -2.627  -26.885 -23.710 3.711  1.048  -1.992 H20 IFO 54 
IFO H21 H21 H 0 1 N N N -2.497  -25.824 -22.266 3.355  1.829  -0.433 H21 IFO 55 
IFO H22 H22 H 0 1 N N N -0.038  -26.220 -22.699 5.178  -0.982 0.375  H22 IFO 56 
IFO H23 H23 H 0 1 N N N 1.975   -25.144 -23.647 7.571  -1.035 0.950  H23 IFO 57 
IFO H24 H24 H 0 1 N N N -0.504  -22.941 -26.346 8.091  2.799  -0.852 H24 IFO 58 
IFO H2  H2  H 0 1 N N N -7.118  -26.245 -21.502 -0.696 -0.651 -0.652 H2  IFO 59 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
IFO F1  C21 SING N N 1  
IFO C22 C21 DOUB Y N 2  
IFO C22 C23 SING Y N 3  
IFO F2  C23 SING N N 4  
IFO C21 C20 SING Y N 5  
IFO C23 C18 DOUB Y N 6  
IFO C14 C13 DOUB Y N 7  
IFO C14 C15 SING Y N 8  
IFO C13 C12 SING Y N 9  
IFO O4  C16 DOUB N N 10 
IFO C20 C19 DOUB Y N 11 
IFO C18 C19 SING Y N 12 
IFO C18 C17 SING N N 13 
IFO C15 C10 DOUB Y N 14 
IFO O5  C16 SING N N 15 
IFO O5  C17 SING N N 16 
IFO C12 C11 DOUB Y N 17 
IFO C16 C4  SING N N 18 
IFO C10 C11 SING Y N 19 
IFO C10 O3  SING N N 20 
IFO O3  C9  SING N N 21 
IFO C1  C2  SING N N 22 
IFO C4  N1  SING N N 23 
IFO C4  C2  SING N N 24 
IFO N1  C5  SING N N 25 
IFO C9  C8  SING N N 26 
IFO C2  S1  SING N N 27 
IFO C2  C3  SING N N 28 
IFO S1  O6  SING N N 29 
IFO S1  O7  DOUB N N 30 
IFO N2  C8  SING N N 31 
IFO N2  C6  SING N N 32 
IFO C8  O2  DOUB N N 33 
IFO C5  C6  DOUB N Z 34 
IFO C6  C7  SING N N 35 
IFO C7  O1  DOUB N N 36 
IFO O6  H1  SING N N 37 
IFO C7  H3  SING N N 38 
IFO C5  H4  SING N N 39 
IFO C4  H5  SING N N 40 
IFO C1  H6  SING N N 41 
IFO C1  H7  SING N N 42 
IFO C1  H8  SING N N 43 
IFO C3  H9  SING N N 44 
IFO C3  H10 SING N N 45 
IFO C3  H11 SING N N 46 
IFO N2  H12 SING N N 47 
IFO C9  H13 SING N N 48 
IFO C9  H14 SING N N 49 
IFO C11 H15 SING N N 50 
IFO C12 H16 SING N N 51 
IFO C13 H17 SING N N 52 
IFO C14 H18 SING N N 53 
IFO C15 H19 SING N N 54 
IFO C17 H20 SING N N 55 
IFO C17 H21 SING N N 56 
IFO C19 H22 SING N N 57 
IFO C20 H23 SING N N 58 
IFO C22 H24 SING N N 59 
IFO N1  H2  SING N N 60 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
IFO InChI            InChI                1.06  "InChI=1S/C23H24F2N2O7S/c1-23(2,35(31)32)21(22(30)34-13-15-8-9-16(24)10-19(15)25)26-11-17(12-28)27-20(29)14-33-18-6-4-3-5-7-18/h3-12,21,26H,13-14H2,1-2H3,(H,27,29)(H,31,32)/b17-11-/t21-/m0/s1" 
IFO InChIKey         InChI                1.06  YLWXTKUTNLREPM-LRJKXPEMSA-N                                                                                                                                                                      
IFO SMILES_CANONICAL CACTVS               3.385 "CC(C)([C@@H](N\C=C(NC(=O)COc1ccccc1)\C=O)C(=O)OCc2ccc(F)cc2F)[S](O)=O"                                                                                                                          
IFO SMILES           CACTVS               3.385 "CC(C)([CH](NC=C(NC(=O)COc1ccccc1)C=O)C(=O)OCc2ccc(F)cc2F)[S](O)=O"                                                                                                                              
IFO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)([C@H](C(=O)OCc1ccc(cc1F)F)N/C=C(/C=O)\NC(=O)COc2ccccc2)S(=O)O"                                                                                                                            
IFO SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)(C(C(=O)OCc1ccc(cc1F)F)NC=C(C=O)NC(=O)COc2ccccc2)S(=O)O"                                                                                                                                   
# 
_pdbx_chem_comp_identifier.comp_id           IFO 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(3~{S})-4-[[2,4-bis(fluoranyl)phenyl]methoxy]-2-methyl-4-oxidanylidene-3-[[(~{Z})-3-oxidanylidene-2-(2-phenoxyethanoylamino)prop-1-enyl]amino]butane-2-sulfinic acid" 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      IFO 
_pdbx_chem_comp_synonyms.name         "penicillin derivative (open form)" 
_pdbx_chem_comp_synonyms.provenance   AUTHOR 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
IFO "Create component"     2022-03-17 PDBE 
IFO "Modify aromatic_flag" 2022-06-16 PDBE 
IFO "Initial release"      2022-06-29 RCSB 
IFO "Modify descriptor"    2022-08-22 RCSB 
# 
