data_J3D
#

_chem_comp.id                                   J3D
_chem_comp.name                                 N-carboxy-L-cysteine
_chem_comp.type                                 "L-peptide linking"
_chem_comp.pdbx_type                            ATOMP
_chem_comp.formula                              "C4 H7 N O4 S"
_chem_comp.mon_nstd_parent_comp_id              CYS
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-08-06
_chem_comp.pdbx_modified_date                   2019-08-02
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       165.168
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    J3D
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6EAX
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
J3D  C01   C1  C  0  1  N  N  N  -4.916  151.220  8.709  -0.444  -1.414   0.432  C01   J3D   1  
J3D  S02   S1  S  0  1  N  N  N  -5.853  152.776  8.378   1.281  -1.924   0.198  S02   J3D   2  
J3D  C03   C2  C  0  1  N  N  R  -3.957  150.648  7.635  -0.679  -0.074  -0.268  C03   J3D   3  
J3D  N04   N1  N  0  1  N  N  N  -4.366  149.321  7.125   0.212   0.938   0.304  N04   J3D   4  
J3D  C05   C3  C  0  1  N  N  N  -3.471  148.441  6.337   1.472   1.065  -0.157  C05   J3D   5  
J3D  O06   O1  O  0  1  N  N  N  -3.929  147.353  5.852   1.869   0.340  -1.048  O06   J3D   6  
J3D  O07   O2  O  0  1  N  N  N  -2.278  148.757  6.148   2.290   1.996   0.368  O07   J3D   7  
J3D  C08   C4  C  0  1  N  N  N  -2.610  150.486  8.329  -2.112   0.350  -0.074  C08   J3D   8  
J3D  O09   O3  O  0  1  N  N  N  -1.587  151.136  7.981  -2.364   1.391   0.485  O09   J3D   9  
J3D  O10   O4  O  0  1  N  Y  N  -2.517  149.661  9.257  -3.109  -0.429  -0.522  O10   J3D  10  
J3D  H011  H1  H  0  0  N  N  N  -5.662  150.439  8.917  -1.107  -2.168   0.006  H011  J3D  11  
J3D  H012  H2  H  0  0  N  N  N  -4.312  151.399  9.611  -0.650  -1.309   1.497  H012  J3D  12  
J3D  H021  H3  H  0  0  N  N  N  -6.526  152.926  9.480   1.341  -3.097   0.855  H021  J3D  13  
J3D  H031  H4  H  0  0  N  N  N  -3.865  151.366  6.806  -0.473  -0.180  -1.334  H031  J3D  14  
J3D  H041  H5  H  0  0  N  N  N  -5.293  149.002  7.322  -0.105   1.518   1.014  H041  J3D  15  
J3D  H1    H6  H  0  1  N  N  N  -1.851  148.086  5.628   3.185   2.049   0.005  H1    J3D  16  
J3D  H2    H7  H  0  1  N  Y  N  -1.624  149.649  9.582  -4.012  -0.116  -0.374  H2    J3D  17  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
J3D  O06  C05   DOUB  N  N   1  
J3D  O07  C05   SING  N  N   2  
J3D  C05  N04   SING  N  N   3  
J3D  N04  C03   SING  N  N   4  
J3D  C03  C08   SING  N  N   5  
J3D  C03  C01   SING  N  N   6  
J3D  O09  C08   DOUB  N  N   7  
J3D  C08  O10   SING  N  N   8  
J3D  S02  C01   SING  N  N   9  
J3D  C01  H011  SING  N  N  10  
J3D  C01  H012  SING  N  N  11  
J3D  S02  H021  SING  N  N  12  
J3D  C03  H031  SING  N  N  13  
J3D  N04  H041  SING  N  N  14  
J3D  O07  H1    SING  N  N  15  
J3D  O10  H2    SING  N  N  16  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
J3D  SMILES            ACDLabs               12.01  "C(S)C(C(O)=O)NC(=O)O"  
J3D  InChI             InChI                 1.03   "InChI=1S/C4H7NO4S/c6-3(7)2(1-10)5-4(8)9/h2,5,10H,1H2,(H,6,7)(H,8,9)/t2-/m0/s1"  
J3D  InChIKey          InChI                 1.03   ZJMMJMHTXLTBFW-REOHCLBHSA-N  
J3D  SMILES_CANONICAL  CACTVS                3.385  "OC(=O)N[C@@H](CS)C(O)=O"  
J3D  SMILES            CACTVS                3.385  "OC(=O)N[CH](CS)C(O)=O"  
J3D  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "C([C@@H](C(=O)O)NC(=O)O)S"  
J3D  SMILES            "OpenEye OEToolkits"  2.0.6  "C(C(C(=O)O)NC(=O)O)S"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
J3D  "SYSTEMATIC NAME"  ACDLabs               12.01  N-carboxy-L-cysteine  
J3D  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "(2~{R})-2-(carboxyamino)-3-sulfanyl-propanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
J3D  "Create component"  2018-08-06  RCSB  
J3D  "Initial release"   2019-08-07  RCSB  
##
