data_J5N
#

_chem_comp.id                                   J5N
_chem_comp.name                                 "~{N}-[(2~{S})-1-[(3~{R},3~{a}~{R},6~{R},6~{a}~{R})-6-ethynyl-3-oxidanyl-2,3,3~{a},5,6,6~{a}-hexahydrofuro[3,2-b]pyrrol-4-yl]-4-methyl-1-oxidanylidene-pentan-2-yl]-4-[5-fluoranyl-2-(4-methylpiperazin-1-yl)-1,3-thiazol-4-yl]benzamide"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C29 H36 F N5 O4 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-02-01
_chem_comp.pdbx_modified_date                   2020-02-14
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       569.691
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    J5N
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6QL8
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
J5N  C12  C1   C  0  1  N  N  N  35.319  14.805  16.803    4.414   0.273   0.425  C12  J5N   1  
J5N  C10  C2   C  0  1  N  N  N  37.933  11.423  14.353    8.667  -2.158   0.898  C10  J5N   2  
J5N  C11  C3   C  0  1  N  N  N  38.801  10.689  14.032    9.471  -2.940   0.553  C11  J5N   3  
J5N  C7   C4   C  0  1  N  N  N  34.809  10.780  16.957    8.425   1.575  -0.863  C7   J5N   4  
J5N  C6   C5   C  0  1  N  N  R  33.829  11.881  16.627    6.977   1.889  -0.428  C6   J5N   5  
J5N  N1   N1   N  0  1  N  N  N  35.650  13.617  16.272    5.730   0.022   0.571  N1   J5N   6  
J5N  C5   C6   C  0  1  N  N  R  34.648  12.714  15.650    6.767   1.027   0.836  C5   J5N   7  
J5N  C4   C7   C  0  1  N  N  R  35.485  11.708  14.891    8.112   0.267   1.001  C4   J5N   8  
J5N  F33  F1   F  0  1  N  N  N  35.973  23.905  15.693   -3.825   2.990   0.846  F33  J5N   9  
J5N  C29  C8   C  0  1  Y  N  N  35.946  23.664  14.330   -4.674   2.000   0.493  C29  J5N  10  
J5N  S30  S1   S  0  1  Y  N  N  35.579  24.952  13.258   -6.414   2.162   0.269  S30  J5N  11  
J5N  C31  C9   C  0  1  Y  N  N  35.745  23.873  11.929   -6.526   0.453  -0.138  C31  J5N  12  
J5N  N34  N2   N  0  1  N  N  N  35.586  24.204  10.598   -7.697  -0.216  -0.460  N34  J5N  13  
J5N  C39  C10  C  0  1  N  N  N  34.835  25.425  10.283   -8.850   0.694  -0.426  C39  J5N  14  
J5N  C38  C11  C  0  1  N  N  N  35.125  25.924   8.878  -10.106  -0.063  -0.864  C38  J5N  15  
J5N  N37  N3   N  0  1  N  N  N  34.891  24.880   7.892  -10.319  -1.211   0.029  N37  J5N  16  
J5N  C40  C12  C  0  1  N  N  N  35.140  25.380   6.536  -11.559  -1.921  -0.313  C40  J5N  17  
J5N  C36  C13  C  0  1  N  N  N  35.742  23.736   8.185   -9.166  -2.121  -0.005  C36  J5N  18  
J5N  C35  C14  C  0  1  N  N  N  35.409  23.180   9.565   -7.909  -1.364   0.433  C35  J5N  19  
J5N  N32  N4   N  0  1  Y  N  N  36.050  22.599  12.278   -5.349  -0.084  -0.084  N32  J5N  20  
J5N  C28  C15  C  0  1  Y  N  N  36.203  22.484  13.640   -4.334   0.718   0.245  C28  J5N  21  
J5N  C25  C16  C  0  1  Y  N  N  36.482  21.135  14.224   -2.939   0.234   0.342  C25  J5N  22  
J5N  C24  C17  C  0  1  Y  N  N  36.477  20.947  15.612   -1.883   1.068  -0.034  C24  J5N  23  
J5N  C23  C18  C  0  1  Y  N  N  36.676  19.697  16.169   -0.595   0.622   0.056  C23  J5N  24  
J5N  C26  C19  C  0  1  Y  N  N  36.667  20.016  13.405   -2.679  -1.054   0.817  C26  J5N  25  
J5N  C27  C20  C  0  1  Y  N  N  36.863  18.752  13.968   -1.392  -1.501   0.907  C27  J5N  26  
J5N  C22  C21  C  0  1  Y  N  N  36.871  18.585  15.356   -0.334  -0.670   0.525  C22  J5N  27  
J5N  C20  C22  C  0  1  N  N  N  37.035  17.210  15.950    1.056  -1.152   0.623  C20  J5N  28  
J5N  O21  O1   O  0  1  N  N  N  37.611  16.339  15.313    1.283  -2.274   1.035  O21  J5N  29  
J5N  N19  N5   N  0  1  N  N  N  36.405  16.939  17.108    2.075  -0.350   0.255  N19  J5N  30  
J5N  C13  C23  C  0  1  N  N  S  36.275  15.601  17.657    3.446  -0.867   0.241  C13  J5N  31  
J5N  C15  C24  C  0  1  N  N  N  35.719  15.663  19.069    3.718  -1.557  -1.097  C15  J5N  32  
J5N  C16  C25  C  0  1  N  N  N  36.612  16.355  20.086    3.402  -0.593  -2.242  C16  J5N  33  
J5N  C18  C26  C  0  1  N  N  N  37.667  15.389  20.611    4.460   0.512  -2.285  C18  J5N  34  
J5N  C17  C27  C  0  1  N  N  N  35.778  16.932  21.224    3.407  -1.356  -3.568  C17  J5N  35  
J5N  O14  O2   O  0  1  N  N  N  34.233  15.328  16.597    4.009   1.416   0.446  O14  J5N  36  
J5N  O9   O3   O  0  1  N  N  N  32.696  11.288  15.986    6.838   3.277  -0.118  O9   J5N  37  
J5N  O8   O4   O  0  1  N  N  N  35.536  10.556  15.744    8.703   0.269  -0.317  O8   J5N  38  
J5N  C3   C28  C  0  1  N  N  R  36.847  12.342  14.747    7.658  -1.177   1.331  C3   J5N  39  
J5N  C2   C29  C  0  1  N  N  N  36.996  13.068  16.074    6.365  -1.306   0.491  C2   J5N  40  
J5N  H1   H1   H  0  1  N  N  N  39.580  10.030  13.744   10.191  -3.639   0.244  H1   J5N  41  
J5N  H2   H2   H  0  1  N  N  N  34.277   9.867  17.263    8.498   1.555  -1.951  H2   J5N  42  
J5N  H3   H3   H  0  1  N  N  N  35.488  11.096  17.762    9.114   2.313  -0.451  H3   J5N  43  
J5N  H4   H4   H  0  1  N  N  N  33.558  12.462  17.521    6.273   1.600  -1.208  H4   J5N  44  
J5N  H5   H5   H  0  1  N  N  N  33.988  13.266  14.965    6.523   1.638   1.705  H5   J5N  45  
J5N  H6   H6   H  0  1  N  N  N  35.044  11.484  13.909    8.763   0.705   1.758  H6   J5N  46  
J5N  H7   H7   H  0  1  N  N  N  35.113  26.209  11.003   -8.987   1.070   0.587  H7   J5N  47  
J5N  H8   H8   H  0  1  N  N  N  33.759  25.213  10.370   -8.674   1.529  -1.104  H8   J5N  48  
J5N  H9   H9   H  0  1  N  N  N  36.176  26.244   8.820  -10.968   0.602  -0.812  H9   J5N  49  
J5N  H10  H10  H  0  1  N  N  N  34.469  26.779   8.658   -9.980  -0.416  -1.887  H10  J5N  50  
J5N  H12  H12  H  0  1  N  N  N  34.487  26.243   6.337  -11.727  -2.724   0.404  H12  J5N  51  
J5N  H13  H13  H  0  1  N  N  N  36.192  25.688   6.446  -12.397  -1.224  -0.280  H13  J5N  52  
J5N  H14  H14  H  0  1  N  N  N  34.928  24.584   5.807  -11.474  -2.340  -1.315  H14  J5N  53  
J5N  H15  H15  H  0  1  N  N  N  35.577  22.955   7.428   -9.342  -2.956   0.673  H15  J5N  54  
J5N  H16  H16  H  0  1  N  N  N  36.796  24.051   8.163   -9.029  -2.498  -1.018  H16  J5N  55  
J5N  H17  H17  H  0  1  N  N  N  34.364  22.838   9.573   -7.047  -2.030   0.381  H17  J5N  56  
J5N  H18  H18  H  0  1  N  N  N  36.074  22.331   9.781   -8.035  -1.011   1.456  H18  J5N  57  
J5N  H19  H19  H  0  1  N  N  N  36.314  21.795  16.260   -2.085   2.065  -0.397  H19  J5N  58  
J5N  H20  H20  H  0  1  N  N  N  36.680  19.583  17.243    0.221   1.266  -0.236  H20  J5N  59  
J5N  H21  H21  H  0  1  N  N  N  36.658  20.130  12.331   -3.496  -1.696   1.112  H21  J5N  60  
J5N  H22  H22  H  0  1  N  N  N  37.010  17.897  13.325   -1.191  -2.497   1.273  H22  J5N  61  
J5N  H23  H23  H  0  1  N  N  N  36.005  17.700  17.618    1.901   0.569  -0.002  H23  J5N  62  
J5N  H24  H24  H  0  1  N  N  N  37.254  15.100  17.674    3.572  -1.585   1.052  H24  J5N  63  
J5N  H25  H25  H  0  1  N  N  N  34.761  16.203  19.034    4.766  -1.851  -1.148  H25  J5N  64  
J5N  H26  H26  H  0  1  N  N  N  35.547  14.632  19.413    3.088  -2.443  -1.184  H26  J5N  65  
J5N  H27  H27  H  0  1  N  N  N  37.127  17.186  19.582    2.419  -0.148  -2.082  H27  J5N  66  
J5N  H28  H28  H  0  1  N  N  N  38.304  15.904  21.345    5.445   0.078  -2.112  H28  J5N  67  
J5N  H29  H29  H  0  1  N  N  N  37.173  14.532  21.092    4.442   0.994  -3.262  H29  J5N  68  
J5N  H30  H30  H  0  1  N  N  N  38.286  15.032  19.775    4.247   1.250  -1.511  H30  J5N  69  
J5N  H31  H31  H  0  1  N  N  N  36.440  17.428  21.949    2.653  -2.142  -3.537  H31  J5N  70  
J5N  H32  H32  H  0  1  N  N  N  35.063  17.664  20.820    3.182  -0.668  -4.383  H32  J5N  71  
J5N  H33  H33  H  0  1  N  N  N  35.229  16.120  21.724    4.389  -1.800  -3.728  H33  J5N  72  
J5N  H34  H34  H  0  1  N  N  N  32.206  10.776  16.618    7.016   3.866  -0.864  H34  J5N  73  
J5N  H35  H35  H  0  1  N  N  N  36.765  13.112  13.966    7.445  -1.285   2.395  H35  J5N  74  
J5N  H36  H36  H  0  1  N  N  N  37.267  12.373  16.882    5.709  -2.066   0.916  H36  J5N  75  
J5N  H37  H37  H  0  1  N  N  N  37.749  13.868  16.010    6.607  -1.549  -0.544  H37  J5N  76  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
J5N  C40  N37  SING  N  N   1  
J5N  N37  C36  SING  N  N   2  
J5N  N37  C38  SING  N  N   3  
J5N  C36  C35  SING  N  N   4  
J5N  C38  C39  SING  N  N   5  
J5N  C35  N34  SING  N  N   6  
J5N  C39  N34  SING  N  N   7  
J5N  N34  C31  SING  N  N   8  
J5N  C31  N32  DOUB  Y  N   9  
J5N  C31  S30  SING  Y  N  10  
J5N  N32  C28  SING  Y  N  11  
J5N  S30  C29  SING  Y  N  12  
J5N  C26  C27  DOUB  Y  N  13  
J5N  C26  C25  SING  Y  N  14  
J5N  C28  C25  SING  N  N  15  
J5N  C28  C29  DOUB  Y  N  16  
J5N  C27  C22  SING  Y  N  17  
J5N  C11  C10  TRIP  N  N  18  
J5N  C25  C24  DOUB  Y  N  19  
J5N  C29  F33  SING  N  N  20  
J5N  C10  C3   SING  N  N  21  
J5N  C3   C4   SING  N  N  22  
J5N  C3   C2   SING  N  N  23  
J5N  C4   C5   SING  N  N  24  
J5N  C4   O8   SING  N  N  25  
J5N  O21  C20  DOUB  N  N  26  
J5N  C22  C20  SING  N  N  27  
J5N  C22  C23  DOUB  Y  N  28  
J5N  C24  C23  SING  Y  N  29  
J5N  C5   N1   SING  N  N  30  
J5N  C5   C6   SING  N  N  31  
J5N  O8   C7   SING  N  N  32  
J5N  C20  N19  SING  N  N  33  
J5N  O9   C6   SING  N  N  34  
J5N  C2   N1   SING  N  N  35  
J5N  N1   C12  SING  N  N  36  
J5N  O14  C12  DOUB  N  N  37  
J5N  C6   C7   SING  N  N  38  
J5N  C12  C13  SING  N  N  39  
J5N  N19  C13  SING  N  N  40  
J5N  C13  C15  SING  N  N  41  
J5N  C15  C16  SING  N  N  42  
J5N  C16  C18  SING  N  N  43  
J5N  C16  C17  SING  N  N  44  
J5N  C11  H1   SING  N  N  45  
J5N  C7   H2   SING  N  N  46  
J5N  C7   H3   SING  N  N  47  
J5N  C6   H4   SING  N  N  48  
J5N  C5   H5   SING  N  N  49  
J5N  C4   H6   SING  N  N  50  
J5N  C39  H7   SING  N  N  51  
J5N  C39  H8   SING  N  N  52  
J5N  C38  H9   SING  N  N  53  
J5N  C38  H10  SING  N  N  54  
J5N  C40  H12  SING  N  N  55  
J5N  C40  H13  SING  N  N  56  
J5N  C40  H14  SING  N  N  57  
J5N  C36  H15  SING  N  N  58  
J5N  C36  H16  SING  N  N  59  
J5N  C35  H17  SING  N  N  60  
J5N  C35  H18  SING  N  N  61  
J5N  C24  H19  SING  N  N  62  
J5N  C23  H20  SING  N  N  63  
J5N  C26  H21  SING  N  N  64  
J5N  C27  H22  SING  N  N  65  
J5N  N19  H23  SING  N  N  66  
J5N  C13  H24  SING  N  N  67  
J5N  C15  H25  SING  N  N  68  
J5N  C15  H26  SING  N  N  69  
J5N  C16  H27  SING  N  N  70  
J5N  C18  H28  SING  N  N  71  
J5N  C18  H29  SING  N  N  72  
J5N  C18  H30  SING  N  N  73  
J5N  C17  H31  SING  N  N  74  
J5N  C17  H32  SING  N  N  75  
J5N  C17  H33  SING  N  N  76  
J5N  O9   H34  SING  N  N  77  
J5N  C3   H35  SING  N  N  78  
J5N  C2   H36  SING  N  N  79  
J5N  C2   H37  SING  N  N  80  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
J5N  InChI             InChI                 1.03   "InChI=1S/C29H36FN5O4S/c1-5-18-15-35(24-22(36)16-39-25(18)24)28(38)21(14-17(2)3)31-27(37)20-8-6-19(7-9-20)23-26(30)40-29(32-23)34-12-10-33(4)11-13-34/h1,6-9,17-18,21-22,24-25,36H,10-16H2,2-4H3,(H,31,37)/t18-,21+,22+,24-,25-/m1/s1"  
J5N  InChIKey          InChI                 1.03   LXQZJMLAONLFAB-KFGZMKLQSA-N  
J5N  SMILES_CANONICAL  CACTVS                3.385  "CC(C)C[C@H](NC(=O)c1ccc(cc1)c2nc(sc2F)N3CCN(C)CC3)C(=O)N4C[C@@H](C#C)[C@H]5OC[C@H](O)[C@@H]45"  
J5N  SMILES            CACTVS                3.385  "CC(C)C[CH](NC(=O)c1ccc(cc1)c2nc(sc2F)N3CCN(C)CC3)C(=O)N4C[CH](C#C)[CH]5OC[CH](O)[CH]45"  
J5N  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "CC(C)C[C@@H](C(=O)N1C[C@H]([C@@H]2[C@H]1[C@H](CO2)O)C#C)NC(=O)c3ccc(cc3)c4c(sc(n4)N5CCN(CC5)C)F"  
J5N  SMILES            "OpenEye OEToolkits"  2.0.6  "CC(C)CC(C(=O)N1CC(C2C1C(CO2)O)C#C)NC(=O)c3ccc(cc3)c4c(sc(n4)N5CCN(CC5)C)F"  
#
_pdbx_chem_comp_identifier.comp_id          J5N
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.6
_pdbx_chem_comp_identifier.identifier       "~{N}-[(2~{S})-1-[(3~{R},3~{a}~{R},6~{R},6~{a}~{R})-6-ethynyl-3-oxidanyl-2,3,3~{a},5,6,6~{a}-hexahydrofuro[3,2-b]pyrrol-4-yl]-4-methyl-1-oxidanylidene-pentan-2-yl]-4-[5-fluoranyl-2-(4-methylpiperazin-1-yl)-1,3-thiazol-4-yl]benzamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
J5N  "Create component"  2019-02-01  EBI   
J5N  "Initial release"   2020-02-19  RCSB  
##
