data_JBY
#

_chem_comp.id                                   JBY
_chem_comp.name                                 "(2S)-2-{(4Z)-2-(aminomethyl)-4-[(4-hydroxyphenyl)methylidene]-5-oxo-4,5-dihydro-1H-imidazol-1-yl}propanoic acid"
_chem_comp.type                                 "L-peptide linking"
_chem_comp.pdbx_type                            ATOMP
_chem_comp.formula                              "C14 H15 N3 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "Gly-Ala-Try Chromophore"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-08-29
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       289.287
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    JBY
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6M9X
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
JBY  C1   C1   C  0  1  N  N  N   2.397  14.476  24.130   1.102  -1.200  -0.152  C1   JBY   1  
JBY  C2   C2   C  0  1  N  N  N   0.470  14.522  25.081   1.336   0.986  -0.304  C2   JBY   2  
JBY  N2   N1   N  0  1  N  N  N   2.666  14.852  25.406  -0.106  -0.743  -0.052  N2   JBY   3  
JBY  N3   N2   N  0  1  N  N  N   1.076  14.239  23.960   2.006  -0.187  -0.306  N3   JBY   4  
JBY  O2   O1   O  0  1  N  N  N  -0.812  14.429  25.331   1.803   2.105  -0.417  O2   JBY   5  
JBY  O    O2   O  0  1  N  N  N  -0.298  12.557  21.055   3.506   0.962   1.511  O    JBY   6  
JBY  C    C3   C  0  1  N  N  N   0.395  12.628  22.068   4.153   0.376   0.676  C    JBY   7  
JBY  CA3  C4   C  0  1  N  N  S   0.266  13.949  22.761   3.456  -0.346  -0.448  CA3  JBY   8  
JBY  CB3  C5   C  0  1  N  N  N   0.547  15.088  21.770   3.904   0.243  -1.788  CB3  JBY   9  
JBY  CA1  C6   C  0  1  N  N  N   3.452  14.389  23.073   1.465  -2.662  -0.099  CA1  JBY  10  
JBY  N    N3   N  0  1  N  N  N   3.700  15.764  22.620   0.246  -3.463   0.080  N    JBY  11  
JBY  CA2  C7   C  0  1  N  N  N   1.463  14.875  26.054  -0.082   0.622  -0.134  CA2  JBY  12  
JBY  CB2  C8   C  0  1  N  N  N   1.112  15.248  27.414  -1.159   1.479  -0.070  CB2  JBY  13  
JBY  CG2  C9   C  0  1  Y  N  N   1.948  15.718  28.529  -2.520   0.941  -0.012  CG2  JBY  14  
JBY  CD2  C10  C  0  1  Y  N  N   1.297  15.990  29.681  -2.726  -0.441   0.105  CD2  JBY  15  
JBY  CE2  C11  C  0  1  Y  N  N   1.917  16.440  30.807  -4.003  -0.939   0.160  CE2  JBY  16  
JBY  CZ   C12  C  0  1  Y  N  N   3.276  16.767  30.744  -5.092  -0.075   0.098  CZ   JBY  17  
JBY  O3   O3   O  0  1  N  N  N   3.794  17.229  31.783  -6.353  -0.574   0.152  O3   JBY  18  
JBY  CE1  C13  C  0  1  Y  N  N   3.943  16.610  29.546  -4.893   1.296  -0.018  CE1  JBY  19  
JBY  CD1  C14  C  0  1  Y  N  N   3.304  16.092  28.419  -3.622   1.806  -0.068  CD1  JBY  20  
JBY  H4   H4   H  0  1  N  N  N  -0.789  14.050  23.055   3.711  -1.405  -0.414  H4   JBY  21  
JBY  H5   H5   H  0  1  N  N  N   0.451  16.055  22.285   3.399  -0.279  -2.601  H5   JBY  22  
JBY  H6   H6   H  0  1  N  N  N   1.567  14.985  21.372   3.649   1.302  -1.823  H6   JBY  23  
JBY  H7   H7   H  0  1  N  N  N  -0.176  15.040  20.942   4.982   0.125  -1.894  H7   JBY  24  
JBY  H8   H8   H  0  1  N  N  N   3.100  13.770  22.235   1.954  -2.949  -1.030  H8   JBY  25  
JBY  H9   H9   H  0  1  N  N  N   4.373  13.954  23.489   2.142  -2.839   0.737  H9   JBY  26  
JBY  H1   H10  H  0  1  N  N  N   4.403  15.759  21.908   0.463  -4.447   0.118  H1   JBY  27  
JBY  H2   H12  H  0  1  N  Y  N   2.855  16.151  22.251  -0.260  -3.171   0.903  H2   JBY  28  
JBY  H13  H13  H  0  1  N  N  N   0.060  15.166  27.645  -0.999   2.547  -0.062  H13  JBY  29  
JBY  H14  H14  H  0  1  N  N  N   0.228  15.843  29.711  -1.882  -1.112   0.152  H14  JBY  30  
JBY  H16  H16  H  0  1  N  N  N   1.369  16.543  31.732  -4.163  -2.003   0.250  H16  JBY  31  
JBY  H17  H17  H  0  1  N  N  N   4.983  16.894  29.479  -5.743   1.962  -0.065  H17  JBY  32  
JBY  H18  H18  H  0  1  N  N  N   3.835  15.980  27.485  -3.469   2.872  -0.154  H18  JBY  33  
JBY  OXT  OXT  O  0  1  N  Y  N   1.152  11.646  22.634   5.493   0.367   0.750  OXT  JBY  34  
JBY  HXT  HXT  H  0  1  N  Y  N   1.075  10.851  22.120   5.895   0.844   1.489  HXT  JBY  35  
JBY  H3   H3   H  0  1  N  N  N   3.148  17.244  32.480  -6.710  -0.645   1.048  H3   JBY  36  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
JBY  O    C    DOUB  N  N   1  
JBY  CB3  CA3  SING  N  N   2  
JBY  C    CA3  SING  N  N   3  
JBY  N    CA1  SING  N  N   4  
JBY  CA3  N3   SING  N  N   5  
JBY  CA1  C1   SING  N  N   6  
JBY  N3   C1   SING  N  N   7  
JBY  N3   C2   SING  N  N   8  
JBY  C1   N2   DOUB  N  N   9  
JBY  C2   O2   DOUB  N  N  10  
JBY  C2   CA2  SING  N  N  11  
JBY  N2   CA2  SING  N  N  12  
JBY  CA2  CB2  DOUB  N  Z  13  
JBY  CB2  CG2  SING  N  N  14  
JBY  CD1  CG2  SING  Y  N  15  
JBY  CD1  CE1  DOUB  Y  N  16  
JBY  CG2  CD2  DOUB  Y  N  17  
JBY  CE1  CZ   SING  Y  N  18  
JBY  CD2  CE2  SING  Y  N  19  
JBY  CZ   CE2  DOUB  Y  N  20  
JBY  CZ   O3   SING  N  N  21  
JBY  CA3  H4   SING  N  N  22  
JBY  CB3  H5   SING  N  N  23  
JBY  CB3  H6   SING  N  N  24  
JBY  CB3  H7   SING  N  N  25  
JBY  CA1  H8   SING  N  N  26  
JBY  CA1  H9   SING  N  N  27  
JBY  N    H1   SING  N  N  28  
JBY  N    H2   SING  N  N  29  
JBY  CB2  H13  SING  N  N  30  
JBY  CD2  H14  SING  N  N  31  
JBY  CE2  H16  SING  N  N  32  
JBY  CE1  H17  SING  N  N  33  
JBY  CD1  H18  SING  N  N  34  
JBY  C    OXT  SING  N  N  35  
JBY  OXT  HXT  SING  N  N  36  
JBY  O3   H3   SING  N  N  37  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
JBY  SMILES            ACDLabs               12.01  "C1(=NC(\C(=O)N1C(C(=O)O)C)=C/c2ccc(O)cc2)CN"  
JBY  InChI             InChI                 1.03   "InChI=1S/C14H15N3O4/c1-8(14(20)21)17-12(7-15)16-11(13(17)19)6-9-2-4-10(18)5-3-9/h2-6,8,18H,7,15H2,1H3,(H,20,21)/b11-6-/t8-/m0/s1"  
JBY  InChIKey          InChI                 1.03   KZUMQCZIDYKIEK-OITNDJBGSA-N  
JBY  SMILES_CANONICAL  CACTVS                3.385  "C[C@H](N1C(=NC(=C\c2ccc(O)cc2)/C1=O)CN)C(O)=O"  
JBY  SMILES            CACTVS                3.385  "C[CH](N1C(=NC(=Cc2ccc(O)cc2)C1=O)CN)C(O)=O"  
JBY  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "C[C@@H](C(=O)O)N1C(=N/C(=C\c2ccc(cc2)O)/C1=O)CN"  
JBY  SMILES            "OpenEye OEToolkits"  2.0.6  "CC(C(=O)O)N1C(=NC(=Cc2ccc(cc2)O)C1=O)CN"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
JBY  "SYSTEMATIC NAME"  ACDLabs               12.01  "(2S)-2-{(4Z)-2-(aminomethyl)-4-[(4-hydroxyphenyl)methylidene]-5-oxo-4,5-dihydro-1H-imidazol-1-yl}propanoic acid"  
JBY  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "(2~{S})-2-[(4~{Z})-2-(aminomethyl)-4-[(4-hydroxyphenyl)methylidene]-5-oxidanylidene-imidazol-1-yl]propanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
JBY  "Create component"  2018-08-29  RCSB  
JBY  "Initial release"   2019-03-13  RCSB  
JBY  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     JBY
_pdbx_chem_comp_synonyms.name        "Gly-Ala-Try Chromophore"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
