data_JNT
#

_chem_comp.id                                   JNT
_chem_comp.name                                 "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{S})-2,3,4,5-tetrakis(oxidanyl)pentyl] hydrogen phosphate"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C15 H25 N5 O14 P2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-03-13
_chem_comp.pdbx_modified_date                   2020-03-27
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       561.332
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    JNT
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6R0R
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
JNT  "O5'"  O1   O  0  1  N  N  N  11.482  7.295  10.123  -0.739   1.996  -0.105  "O5'"   JNT   1  
JNT  "C5'"  C1   C  0  1  N  N  N  12.844  7.010  10.389  -2.030   2.596   0.026  "C5'"   JNT   2  
JNT  "C4'"  C2   C  0  1  N  N  R  13.597  7.017   9.086  -3.013   1.903  -0.918  "C4'"   JNT   3  
JNT  "O4'"  O2   O  0  1  N  N  N  13.102  6.090   8.127  -3.224   0.546  -0.495  "O4'"   JNT   4  
JNT  "C3'"  C3   C  0  1  N  N  S  13.403  8.349   8.465  -4.378   2.618  -0.871  "C3'"   JNT   5  
JNT  "O3'"  O3   O  0  1  N  N  N  14.646  9.028   8.469  -4.726   3.117  -2.164  "O3'"   JNT   6  
JNT  "C2'"  C4   C  0  1  N  N  R  12.827  8.195   7.072  -5.370   1.515  -0.430  "C2'"   JNT   7  
JNT  "O2'"  O4   O  0  1  N  N  N  13.543  8.890   6.048  -6.593   1.607  -1.162  "O2'"   JNT   8  
JNT  "C1'"  C5   C  0  1  N  N  R  12.921  6.711   6.856  -4.597   0.218  -0.799  "C1'"   JNT   9  
JNT  N9     N1   N  0  1  Y  N  N  11.652  6.123   6.358  -5.054  -0.906   0.022  N9      JNT  10  
JNT  C8     C6   C  0  1  Y  N  N  10.410  6.605   6.541  -4.484  -1.344   1.180  C8      JNT  11  
JNT  N7     N2   N  0  1  Y  N  N   9.487  5.820   5.986  -5.147  -2.363   1.645  N7      JNT  12  
JNT  C5     C7   C  0  1  Y  N  N  10.171  4.781   5.429  -6.182  -2.643   0.817  C5      JNT  13  
JNT  C4     C8   C  0  1  Y  N  N  11.588  4.983   5.665  -6.138  -1.708  -0.232  C4      JNT  14  
JNT  N3     N3   N  0  1  Y  N  N  12.509  4.088   5.200  -7.058  -1.768  -1.189  N3      JNT  15  
JNT  C2     C9   C  0  1  Y  N  N  12.067  3.026   4.509  -7.998  -2.689  -1.160  C2      JNT  16  
JNT  N1     N4   N  0  1  Y  N  N  10.756  2.791   4.302  -8.080  -3.588  -0.196  N1      JNT  17  
JNT  C6     C10  C  0  1  Y  N  N   9.780  3.619   4.681  -7.210  -3.601   0.809  C6      JNT  18  
JNT  N6     N5   N  0  1  N  N  N   8.472  3.377   4.459  -7.303  -4.547   1.814  N6      JNT  19  
JNT  O1C    O5   O  0  1  N  N  N   4.712  5.445  14.372   9.744  -4.227  -0.550  "O1'A"  JNT  20  
JNT  C1A    C11  C  0  1  N  N  N   4.439  6.394  13.544   9.393  -2.887  -0.201  "C1'A"  JNT  21  
JNT  C2A    C12  C  0  1  N  N  S   5.630  7.245  13.110   7.908  -2.657  -0.491  "C2'A"  JNT  22  
JNT  O2C    O6   O  0  1  N  N  N   6.601  6.389  12.474   7.676  -2.754  -1.897  "O2'A"  JNT  23  
JNT  C3A    C13  C  0  1  N  N  S   6.262  7.947  14.328   7.503  -1.265  -0.002  "C3'A"  JNT  24  
JNT  O3C    O7   O  0  1  N  N  N   5.340  8.834  15.037   7.735  -1.167   1.405  "O3'A"  JNT  25  
JNT  C4A    C14  C  0  1  N  N  R   7.480  8.810  13.994   6.018  -1.035  -0.291  "C4'A"  JNT  26  
JNT  O4C    O8   O  0  1  N  N  N   7.573  9.150  12.613   5.786  -1.132  -1.698  "O4'A"  JNT  27  
JNT  C5A    C15  C  0  1  N  N  N   8.808  8.179  14.393   5.613   0.357   0.197  "C5'A"  JNT  28  
JNT  O5A    O9   O  0  1  N  N  N   9.881  9.133  14.238   4.203   0.528   0.033  "O5'A"  JNT  29  
JNT  PB     P1   P  0  1  N  N  N  11.367  8.653  13.894   3.430   1.879   0.445  PB      JNT  30  
JNT  O2B    O10  O  0  1  N  N  N  11.794  7.633  14.940   3.934   3.091  -0.487  O2B     JNT  31  
JNT  O1B    O11  O  0  1  N  N  N  12.223  9.863  13.705   3.712   2.197   1.862  O1B     JNT  32  
JNT  O3A    O12  O  0  1  N  N  N  11.296  7.829  12.530   1.846   1.672   0.246  O3A     JNT  33  
JNT  PA     P2   P  0  1  N  N  N  10.576  8.155  11.122   0.542   2.476   0.742  PA      JNT  34  
JNT  O1A    O13  O  0  1  N  N  N  10.649  9.616  10.830   0.751   3.927   0.540  O1A     JNT  35  
JNT  O2A    O14  O  0  1  N  N  N   9.234  7.547  11.107   0.293   2.182   2.305  O2A     JNT  36  
JNT  H1     H1   H  0  1  N  N  N  12.930  6.021  10.862  -2.376   2.490   1.054  H1      JNT  37  
JNT  H2     H2   H  0  1  N  N  N  13.259  7.776  11.061  -1.965   3.654  -0.228  H2      JNT  38  
JNT  H3     H3   H  0  1  N  N  N  14.667  6.846   9.278  -2.623   1.918  -1.936  H3      JNT  39  
JNT  H4     H4   H  0  1  N  N  N  12.679  8.913   9.072  -4.358   3.429  -0.142  H4      JNT  40  
JNT  H5     H5   H  0  1  N  N  N  14.965  9.100   9.361  -5.577   3.577  -2.191  H5      JNT  41  
JNT  H6     H6   H  0  1  N  N  N  11.770  8.499   7.079  -5.556   1.565   0.643  H6      JNT  42  
JNT  H7     H7   H  0  1  N  N  N  13.477  9.826   6.194  -7.067   2.440  -1.033  H7      JNT  43  
JNT  H8     H8   H  0  1  N  N  N  13.750  6.477   6.172  -4.711  -0.008  -1.859  H8      JNT  44  
JNT  H9     H9   H  0  1  N  N  N  10.187  7.518   7.073  -3.611  -0.909   1.643  H9      JNT  45  
JNT  H10    H10  H  0  1  N  N  N  12.789  2.333   4.103  -8.731  -2.710  -1.953  H10     JNT  46  
JNT  H11    H11  H  0  1  N  N  N   8.370  2.505   3.981  -8.010  -5.211   1.791  H11     JNT  47  
JNT  H12    H12  H  0  1  N  N  N   7.988  3.336   5.333  -6.662  -4.547   2.542  H12     JNT  48  
JNT  H13    H13  H  0  1  N  N  N   3.917  4.971  14.585  10.673  -4.444  -0.393  H13     JNT  49  
JNT  H14    H14  H  0  1  N  N  N   3.702  7.058  14.019   9.585  -2.725   0.859  H14     JNT  50  
JNT  H15    H15  H  0  1  N  N  N   3.998  5.942  12.643   9.990  -2.190  -0.789  H15     JNT  51  
JNT  H16    H16  H  0  1  N  N  N   5.281  8.011  12.402   7.316  -3.411   0.029  H16     JNT  52  
JNT  H17    H17  H  0  1  N  N  N   7.348  6.907  12.199   8.172  -2.112  -2.423  H17     JNT  53  
JNT  H18    H18  H  0  1  N  N  N   6.593  7.163  15.025   8.095  -0.511  -0.521  H18     JNT  54  
JNT  H19    H19  H  0  1  N  N  N   5.788  9.234  15.773   7.239  -1.809   1.930  H19     JNT  55  
JNT  H20    H20  H  0  1  N  N  N   7.380  9.741  14.571   5.426  -1.788   0.228  H20     JNT  56  
JNT  H21    H21  H  0  1  N  N  N   8.346  9.684  12.469   6.282  -0.490  -2.224  H21     JNT  57  
JNT  H22    H22  H  0  1  N  N  N   8.756  7.858  15.444   5.872   0.462   1.250  H22     JNT  58  
JNT  H23    H23  H  0  1  N  N  N   9.003  7.306  13.752   6.140   1.114  -0.384  H23     JNT  59  
JNT  H24    H24  H  0  1  N  N  N  12.597  7.923  15.356   3.781   2.951  -1.432  H24     JNT  60  
JNT  H25    H25  H  0  1  N  N  N   8.587  8.212  10.903   0.148   1.248   2.512  H25     JNT  61  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
JNT  N1     C2     DOUB  Y  N   1  
JNT  N1     C6     SING  Y  N   2  
JNT  N6     C6     SING  N  N   3  
JNT  C2     N3     SING  Y  N   4  
JNT  C6     C5     DOUB  Y  N   5  
JNT  N3     C4     DOUB  Y  N   6  
JNT  C5     C4     SING  Y  N   7  
JNT  C5     N7     SING  Y  N   8  
JNT  C4     N9     SING  Y  N   9  
JNT  N7     C8     DOUB  Y  N  10  
JNT  "O2'"  "C2'"  SING  N  N  11  
JNT  N9     C8     SING  Y  N  12  
JNT  N9     "C1'"  SING  N  N  13  
JNT  "C1'"  "C2'"  SING  N  N  14  
JNT  "C1'"  "O4'"  SING  N  N  15  
JNT  "C2'"  "C3'"  SING  N  N  16  
JNT  "O4'"  "C4'"  SING  N  N  17  
JNT  "C3'"  "O3'"  SING  N  N  18  
JNT  "C3'"  "C4'"  SING  N  N  19  
JNT  "C4'"  "C5'"  SING  N  N  20  
JNT  "O5'"  "C5'"  SING  N  N  21  
JNT  "O5'"  PA     SING  N  N  22  
JNT  O1A    PA     DOUB  N  N  23  
JNT  O2A    PA     SING  N  N  24  
JNT  PA     O3A    SING  N  N  25  
JNT  O2C    C2A    SING  N  N  26  
JNT  O3A    PB     SING  N  N  27  
JNT  O4C    C4A    SING  N  N  28  
JNT  C2A    C1A    SING  N  N  29  
JNT  C2A    C3A    SING  N  N  30  
JNT  C1A    O1C    SING  N  N  31  
JNT  O1B    PB     DOUB  N  N  32  
JNT  PB     O5A    SING  N  N  33  
JNT  PB     O2B    SING  N  N  34  
JNT  C4A    C3A    SING  N  N  35  
JNT  C4A    C5A    SING  N  N  36  
JNT  O5A    C5A    SING  N  N  37  
JNT  "C5'"  H1     SING  N  N  38  
JNT  "C5'"  H2     SING  N  N  39  
JNT  "C4'"  H3     SING  N  N  40  
JNT  "C3'"  H4     SING  N  N  41  
JNT  "O3'"  H5     SING  N  N  42  
JNT  "C2'"  H6     SING  N  N  43  
JNT  "O2'"  H7     SING  N  N  44  
JNT  "C1'"  H8     SING  N  N  45  
JNT  C8     H9     SING  N  N  46  
JNT  C2     H10    SING  N  N  47  
JNT  N6     H11    SING  N  N  48  
JNT  N6     H12    SING  N  N  49  
JNT  O1C    H13    SING  N  N  50  
JNT  C1A    H14    SING  N  N  51  
JNT  C1A    H15    SING  N  N  52  
JNT  C2A    H16    SING  N  N  53  
JNT  O2C    H17    SING  N  N  54  
JNT  C3A    H18    SING  N  N  55  
JNT  O3C    H19    SING  N  N  56  
JNT  C4A    H20    SING  N  N  57  
JNT  O4C    H21    SING  N  N  58  
JNT  C5A    H22    SING  N  N  59  
JNT  C5A    H23    SING  N  N  60  
JNT  O2B    H24    SING  N  N  61  
JNT  O2A    H25    SING  N  N  62  
JNT  C3A    O3C    SING  N  N  63  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
JNT  InChI             InChI                 1.03   "InChI=1S/C15H25N5O14P2/c16-13-9-14(18-4-17-13)20(5-19-9)15-12(26)11(25)8(33-15)3-32-36(29,30)34-35(27,28)31-2-7(23)10(24)6(22)1-21/h4-8,10-12,15,21-26H,1-3H2,(H,27,28)(H,29,30)(H2,16,17,18)/t6-,7+,8+,10-,11+,12+,15+/m0/s1"  
JNT  InChIKey          InChI                 1.03   QKJRZYRQRSLXSV-AOOZFPJJSA-N  
JNT  SMILES_CANONICAL  CACTVS                3.385  "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@@H](O)[C@@H](O)[C@@H](O)CO)[C@@H](O)[C@H]3O"  
JNT  SMILES            CACTVS                3.385  "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH](O)[CH](O)[CH](O)CO)[CH](O)[CH]3O"  
JNT  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OC[C@H]([C@H]([C@H](CO)O)O)O)O)O)N"  
JNT  SMILES            "OpenEye OEToolkits"  2.0.7  "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC(C(C(CO)O)O)O)O)O)N"  
#
_pdbx_chem_comp_identifier.comp_id          JNT
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{S})-2,3,4,5-tetrakis(oxidanyl)pentyl] hydrogen phosphate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
JNT  "Create component"  2019-03-13  RCSB  
JNT  "Initial release"   2020-04-01  RCSB  
##
