data_K7K
#

_chem_comp.id                                   K7K
_chem_comp.name                                 "2-azanyl-3-[hexyl-[2-(3-oxidanylpyridin-2-yl)pyridin-3-yl]oxy-phosphoryl]oxy-propanal"
_chem_comp.type                                 "L-peptide linking"
_chem_comp.pdbx_type                            ATOMP
_chem_comp.formula                              "C19 H26 N3 O6 P"
_chem_comp.mon_nstd_parent_comp_id              SER
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-05-01
_chem_comp.pdbx_modified_date                   2021-06-22
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       423.400
_chem_comp.one_letter_code                      S
_chem_comp.three_letter_code                    K7K
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6RKY
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
K7K  N    N1   N  0  1  N  N  N  36.085  15.473  23.715  -1.079   2.672   0.525  N    K7K   1  
K7K  C10  C1   C  0  1  Y  N  N  35.588   9.381  20.599  -3.496  -2.153  -1.695  C10  K7K   2  
K7K  C11  C2   C  0  1  Y  N  N  35.924  10.641  21.090  -2.411  -2.847  -2.200  C11  K7K   3  
K7K  C12  C3   C  0  1  Y  N  N  36.602  10.767  22.313  -1.198  -2.796  -1.529  C12  K7K   4  
K7K  C13  C4   C  0  1  Y  N  N  36.846   7.125  23.143  -2.189  -0.562   1.328  C13  K7K   5  
K7K  C14  C5   C  0  1  Y  N  N  37.372   6.862  24.439  -3.328   0.113   1.779  C14  K7K   6  
K7K  C15  C6   C  0  1  Y  N  N  37.572   5.543  24.873  -3.246   0.866   2.944  C15  K7K   7  
K7K  C16  C7   C  0  1  Y  N  N  37.264   4.458  24.032  -2.034   0.917   3.615  C16  K7K   8  
K7K  C17  C8   C  0  1  Y  N  N  36.747   4.699  22.751  -0.948   0.223   3.110  C17  K7K   9  
K7K  CA   C9   C  0  1  N  N  S  36.734  14.961  24.981  -0.742   2.428  -0.884  CA   K7K  10  
K7K  C    C10  C  0  1  N  N  N  38.094  15.609  25.250  -1.872   2.902  -1.760  C    K7K  11  
K7K  O    O1   O  0  1  N  N  N  38.135  16.792  25.589  -2.977   3.050  -1.294  O    K7K  12  
K7K  CB   C11  C  0  1  N  N  N  36.547  13.486  25.377  -0.519   0.930  -1.103  CB   K7K  13  
K7K  OG   O2   O  0  1  N  N  N  36.886  12.410  24.497   0.626   0.506  -0.361  OG   K7K  14  
K7K  P01  P1   P  0  1  N  N  S  37.977  11.296  24.966   1.155  -1.015  -0.358  P01  K7K  15  
K7K  C01  C12  C  0  1  N  N  N  37.641  11.050  26.704   2.712  -1.116   0.584  C01  K7K  16  
K7K  C07  C13  C  0  1  Y  N  N  36.950   9.638  23.089  -1.117  -2.044  -0.364  C07  K7K  17  
K7K  N01  N2   N  0  1  Y  N  N  35.970   8.400  21.399  -3.395  -1.447  -0.588  N01  K7K  18  
K7K  O01  O3   O  0  1  N  N  N  39.345  11.859  24.685   1.391  -1.458  -1.751  O01  K7K  19  
K7K  C02  C14  C  0  1  N  N  N  38.831  11.159  27.650   3.796  -0.312  -0.137  C02  K7K  20  
K7K  C08  C15  C  0  1  Y  N  N  36.598   8.339  22.577  -2.256  -1.369   0.087  C08  K7K  21  
K7K  N02  N3   N  0  1  Y  N  N  36.610   5.991  22.472  -1.048  -0.480   2.000  N02  K7K  22  
K7K  O02  O4   O  0  1  N  N  N  37.712   7.897  25.351  -4.495   0.035   1.089  O02  K7K  23  
K7K  C03  C16  C  0  1  N  N  N  38.653  12.219  28.741   5.103  -0.396   0.654  C03  K7K  24  
K7K  O03  O5   O  0  1  N  N  N  37.631   9.818  24.363   0.051  -1.966   0.327  O03  K7K  25  
K7K  C04  C17  C  0  1  N  N  N  39.641  12.002  29.892   6.188   0.408  -0.066  C04  K7K  26  
K7K  C05  C18  C  0  1  N  N  N  40.855  12.941  29.796   7.495   0.324   0.725  C05  K7K  27  
K7K  C06  C19  C  0  1  N  N  N  42.145  12.198  30.136   8.579   1.128   0.005  C06  K7K  28  
K7K  H1   H1   H  0  1  N  N  N  35.203  15.020  23.585  -1.168   3.660   0.710  H1   K7K  29  
K7K  H2   H2   H  0  1  N  N  N  35.945  16.460  23.788  -1.920   2.178   0.786  H2   K7K  30  
K7K  H4   H4   H  0  1  N  N  N  35.071   9.223  19.664  -4.439  -2.188  -2.219  H4   K7K  31  
K7K  H5   H5   H  0  1  N  N  N  35.662  11.525  20.527  -2.507  -3.423  -3.108  H5   K7K  32  
K7K  H6   H6   H  0  1  N  N  N  36.864  11.752  22.670  -0.337  -3.330  -1.904  H6   K7K  33  
K7K  H7   H7   H  0  1  N  N  N  37.966   5.359  25.862  -4.108   1.399   3.319  H7   K7K  34  
K7K  H8   H8   H  0  1  N  N  N  37.425   3.445  24.371  -1.938   1.493   4.523  H8   K7K  35  
K7K  H9   H9   H  0  1  N  N  N  36.486   3.912  22.059  -0.003   0.262   3.631  H9   K7K  36  
K7K  H10  H10  H  0  1  N  N  N  36.117  15.456  25.745   0.168   2.972  -1.138  H10  K7K  37  
K7K  H12  H12  H  0  1  N  N  N  35.479  13.365  25.612  -1.396   0.379  -0.765  H12  K7K  38  
K7K  H13  H13  H  0  1  N  N  N  37.143  13.335  26.289  -0.356   0.739  -2.163  H13  K7K  39  
K7K  H14  H14  H  0  1  N  N  N  36.900  11.803  27.011   2.560  -0.707   1.582  H14  K7K  40  
K7K  H15  H15  H  0  1  N  N  N  37.212  10.044  26.822   3.023  -2.158   0.661  H15  K7K  41  
K7K  H16  H16  H  0  1  N  N  N  38.980  10.183  28.135   3.949  -0.720  -1.135  H16  K7K  42  
K7K  H17  H17  H  0  1  N  N  N  39.723  11.415  27.059   3.485   0.730  -0.214  H17  K7K  43  
K7K  H18  H18  H  0  1  N  N  N  38.044   7.515  26.155  -5.065  -0.697   1.362  H18  K7K  44  
K7K  H19  H19  H  0  1  N  N  N  38.823  13.214  28.305   4.951   0.013   1.653  H19  K7K  45  
K7K  H20  H20  H  0  1  N  N  N  37.627  12.161  29.133   5.415  -1.438   0.731  H20  K7K  46  
K7K  H21  H21  H  0  1  N  N  N  39.123  12.188  30.844   6.340  -0.000  -1.065  H21  K7K  47  
K7K  H22  H22  H  0  1  N  N  N  39.995  10.961  29.864   5.877   1.450  -0.143  H22  K7K  48  
K7K  H23  H23  H  0  1  N  N  N  40.926  13.335  28.772   7.343   0.732   1.724  H23  K7K  49  
K7K  H24  H24  H  0  1  N  N  N  40.723  13.775  30.501   7.806  -0.718   0.802  H24  K7K  50  
K7K  H25  H25  H  0  1  N  N  N  42.998  12.889  30.061   8.732   0.719  -0.994  H25  K7K  51  
K7K  H26  H26  H  0  1  N  N  N  42.082  11.804  31.161   8.268   2.170  -0.073  H26  K7K  52  
K7K  H27  H27  H  0  1  N  N  N  42.285  11.365  29.431   9.511   1.068   0.568  H27  K7K  53  
K7K  OXT  OXT  O  0  1  N  Y  N       ?       ?       ?  -1.652   3.159  -3.059  OXT  K7K  54  
K7K  HXT  HXT  H  0  1  N  Y  N       ?       ?       ?  -2.408   3.460  -3.582  HXT  K7K  55  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
K7K  C10  C11  DOUB  Y  N   1  
K7K  C10  N01  SING  Y  N   2  
K7K  C11  C12  SING  Y  N   3  
K7K  N01  C08  DOUB  Y  N   4  
K7K  C12  C07  DOUB  Y  N   5  
K7K  N02  C17  DOUB  Y  N   6  
K7K  N02  C13  SING  Y  N   7  
K7K  C08  C07  SING  Y  N   8  
K7K  C08  C13  SING  N  N   9  
K7K  C17  C16  SING  Y  N  10  
K7K  C07  O03  SING  N  N  11  
K7K  C13  C14  DOUB  Y  N  12  
K7K  N    CA   SING  N  N  13  
K7K  C16  C15  DOUB  Y  N  14  
K7K  O03  P01  SING  N  N  15  
K7K  C14  C15  SING  Y  N  16  
K7K  C14  O02  SING  N  N  17  
K7K  OG   P01  SING  N  N  18  
K7K  OG   CB   SING  N  N  19  
K7K  O01  P01  DOUB  N  N  20  
K7K  P01  C01  SING  N  N  21  
K7K  CA   C    SING  N  N  22  
K7K  CA   CB   SING  N  N  23  
K7K  C    O    DOUB  N  N  24  
K7K  C01  C02  SING  N  N  25  
K7K  C02  C03  SING  N  N  26  
K7K  C03  C04  SING  N  N  27  
K7K  C05  C04  SING  N  N  28  
K7K  C05  C06  SING  N  N  29  
K7K  N    H1   SING  N  N  30  
K7K  N    H2   SING  N  N  31  
K7K  C10  H4   SING  N  N  32  
K7K  C11  H5   SING  N  N  33  
K7K  C12  H6   SING  N  N  34  
K7K  C15  H7   SING  N  N  35  
K7K  C16  H8   SING  N  N  36  
K7K  C17  H9   SING  N  N  37  
K7K  CA   H10  SING  N  N  38  
K7K  CB   H12  SING  N  N  39  
K7K  CB   H13  SING  N  N  40  
K7K  C01  H14  SING  N  N  41  
K7K  C01  H15  SING  N  N  42  
K7K  C02  H16  SING  N  N  43  
K7K  C02  H17  SING  N  N  44  
K7K  O02  H18  SING  N  N  45  
K7K  C03  H19  SING  N  N  46  
K7K  C03  H20  SING  N  N  47  
K7K  C04  H21  SING  N  N  48  
K7K  C04  H22  SING  N  N  49  
K7K  C05  H23  SING  N  N  50  
K7K  C05  H24  SING  N  N  51  
K7K  C06  H25  SING  N  N  52  
K7K  C06  H26  SING  N  N  53  
K7K  C06  H27  SING  N  N  54  
K7K  OXT  HXT  SING  N  N  55  
K7K  C    OXT  SING  N  N  56  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
K7K  InChI             InChI                 1.03   "InChI=1S/C19H26N3O6P/c1-2-3-4-5-12-29(26,27-13-14(20)19(24)25)28-16-9-7-11-22-18(16)17-15(23)8-6-10-21-17/h6-11,14,23H,2-5,12-13,20H2,1H3,(H,24,25)/t14-,29-/m0/s1"  
K7K  InChIKey          InChI                 1.03   XBHSCEFLQPYSRV-MMEWPQADSA-N  
K7K  SMILES_CANONICAL  CACTVS                3.385  "CCCCCC[P@](=O)(OC[C@H](N)C(O)=O)Oc1cccnc1c2ncccc2O"  
K7K  SMILES            CACTVS                3.385  "CCCCCC[P](=O)(OC[CH](N)C(O)=O)Oc1cccnc1c2ncccc2O"  
K7K  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CCCCCC[P@](=O)(OC[C@@H](C(=O)O)N)Oc1cccnc1c2c(cccn2)O"  
K7K  SMILES            "OpenEye OEToolkits"  2.0.7  "CCCCCCP(=O)(OCC(C(=O)O)N)Oc1cccnc1c2c(cccn2)O"  
#
_pdbx_chem_comp_identifier.comp_id          K7K
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{S})-2-azanyl-3-[hexyl-[2-(3-oxidanylpyridin-2-yl)pyridin-3-yl]oxy-phosphoryl]oxy-propanoic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
K7K  "Create component"    2019-05-01  RCSB  
K7K  "Initial release"     2019-12-25  RCSB  
K7K  "Other modification"  2021-06-22  PDBE  
##
