data_KMQ
#

_chem_comp.id                                   KMQ
_chem_comp.name                                 "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{R},4~{R},5~{S})-4-[(~{E})-but-2-enoxy]-3,5-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C19 H29 N5 O14 P2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-06-08
_chem_comp.pdbx_modified_date                   2020-04-10
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       613.406
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    KMQ
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6RXR
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
KMQ  C3     C1   C  0  1  N  N  N  71.964  78.554  23.236   -9.532   1.414  -0.924  C3     KMQ   1  
KMQ  C21    C2   C  0  1  N  N  N  73.125  77.657  23.456  -10.628   2.377  -0.544  C21    KMQ   2  
KMQ  C1     C3   C  0  1  N  N  N  73.663  76.823  22.579  -11.151   3.163  -1.452  C1     KMQ   3  
KMQ  C7     C4   C  0  1  N  N  N  74.840  75.995  23.004  -12.247   4.126  -1.073  C7     KMQ   4  
KMQ  O2D    O1   O  0  1  N  N  N  71.544  79.376  24.350   -8.493   1.465   0.056  O2D    KMQ   5  
KMQ  C2D    C5   C  0  1  N  N  R  71.523  78.738  25.623   -7.399   0.585  -0.210  C2D    KMQ   6  
KMQ  C3D    C6   C  0  1  N  N  R  70.489  77.631  25.705   -6.735   0.115   1.107  C3D    KMQ   7  
KMQ  O3D    O2   O  0  1  N  N  N  70.643  76.565  24.757   -7.055   1.009   2.175  O3D    KMQ   8  
KMQ  C1D    C7   C  0  1  N  N  S  70.844  79.775  26.482   -6.239   1.339  -0.908  C1D    KMQ   9  
KMQ  O1D    O3   O  0  1  N  N  N  71.338  81.076  26.158   -6.121   2.668  -0.394  O1D    KMQ  10  
KMQ  O4D    O4   O  0  1  N  N  N  69.459  79.678  26.122   -5.075   0.555  -0.569  O4D    KMQ  11  
KMQ  C4D    C8   C  0  1  N  N  R  69.212  78.416  25.488   -5.225   0.153   0.803  C4D    KMQ  12  
KMQ  C5D    C9   C  0  1  N  N  N  68.005  77.744  26.118   -4.619  -1.237   1.007  C5D    KMQ  13  
KMQ  O5D    O5   O  0  1  N  N  N  67.760  78.405  27.350   -3.201  -1.168   0.836  O5D    KMQ  14  
KMQ  PB     P1   P  0  1  N  N  N  67.324  77.584  28.657   -2.238  -2.450   0.979  PB     KMQ  15  
KMQ  O2B    O6   O  0  1  N  N  N  65.859  77.834  28.903   -2.277  -2.984   2.497  O2B    KMQ  16  
KMQ  O1B    O7   O  0  1  N  N  N  67.618  76.118  28.466   -2.701  -3.520   0.068  O1B    KMQ  17  
KMQ  O3A    O8   O  0  1  N  N  N  68.193  78.141  29.888   -0.730  -2.034   0.595  O3A    KMQ  18  
KMQ  PA     P2   P  0  1  N  N  N  67.788  79.483  30.675    0.577  -2.858   0.145  PA     KMQ  19  
KMQ  O1A    O9   O  0  1  N  N  N  68.972  79.911  31.504    1.206  -3.607   1.423  O1A    KMQ  20  
KMQ  O2A    O10  O  0  1  N  N  N  67.369  80.556  29.697    0.201  -3.859  -0.878  O2A    KMQ  21  
KMQ  "O5'"  O11  O  0  1  N  N  N  66.555  79.142  31.639    1.665  -1.844  -0.472  "O5'"  KMQ  22  
KMQ  "C5'"  C10  C  0  1  N  N  N  66.722  78.129  32.627    2.893  -2.281  -1.057  "C5'"  KMQ  23  
KMQ  "C4'"  C11  C  0  1  N  N  R  65.392  77.897  33.322    3.688  -1.067  -1.541  "C4'"  KMQ  24  
KMQ  "O4'"  O12  O  0  1  N  N  N  65.546  76.846  34.277    4.174  -0.303  -0.416  "O4'"  KMQ  25  
KMQ  "C1'"  C12  C  0  1  N  N  R  64.944  77.225  35.510    5.274   0.477  -0.932  "C1'"  KMQ  26  
KMQ  "C2'"  C13  C  0  1  N  N  R  64.985  78.739  35.545    6.028  -0.482  -1.880  "C2'"  KMQ  27  
KMQ  "O2'"  O13  O  0  1  N  N  N  63.838  79.230  36.242    6.508   0.222  -3.027  "O2'"  KMQ  28  
KMQ  "C3'"  C14  C  0  1  N  N  S  64.943  79.134  34.082    4.961  -1.521  -2.290  "C3'"  KMQ  29  
KMQ  "O3'"  O14  O  0  1  N  N  N  63.602  79.438  33.699    4.749  -1.490  -3.703  "O3'"  KMQ  30  
KMQ  N9     N1   N  0  1  Y  N  N  65.701  76.635  36.637    6.150   0.909   0.160  N9     KMQ  31  
KMQ  C8     C15  C  0  1  Y  N  N  66.815  77.122  37.218    6.277   0.309   1.378  C8     KMQ  32  
KMQ  N7     N2   N  0  1  Y  N  N  67.234  76.303  38.220    7.142   0.955   2.103  N7     KMQ  33  
KMQ  C5     C16  C  0  1  Y  N  N  66.376  75.266  38.276    7.626   2.007   1.400  C5     KMQ  34  
KMQ  C4     C17  C  0  1  Y  N  N  65.373  75.489  37.228    6.999   1.987   0.142  C4     KMQ  35  
KMQ  C6     C18  C  0  1  Y  N  N  66.224  74.041  39.094    8.557   3.026   1.660  C6     KMQ  36  
KMQ  N6     N3   N  0  1  N  N  N  67.100  73.747  40.084    9.210   3.094   2.878  N6     KMQ  37  
KMQ  N1     N4   N  0  1  Y  N  N  65.181  73.227  38.816    8.797   3.923   0.709  N1     KMQ  38  
KMQ  C2     C19  C  0  1  Y  N  N  64.298  73.501  37.837    8.179   3.866  -0.456  C2     KMQ  39  
KMQ  N3     N5   N  0  1  Y  N  N  64.375  74.591  37.057    7.308   2.923  -0.749  N3     KMQ  40  
KMQ  H1     H1   H  0  1  N  N  N  72.219  79.228  22.405   -9.937   0.403  -0.971  H1     KMQ  41  
KMQ  H2     H2   H  0  1  N  N  N  71.109  77.924  22.948   -9.127   1.689  -1.898  H2     KMQ  42  
KMQ  H3     H3   H  0  1  N  N  N  73.580  77.687  24.435  -10.981   2.419   0.475  H3     KMQ  43  
KMQ  H4     H4   H  0  1  N  N  N  73.263  76.741  21.579  -10.798   3.121  -2.472  H4     KMQ  44  
KMQ  H5     H5   H  0  1  N  N  N  75.164  75.361  22.166  -13.099   3.571  -0.682  H5     KMQ  45  
KMQ  H6     H6   H  0  1  N  N  N  75.665  76.658  23.303  -11.880   4.813  -0.310  H6     KMQ  46  
KMQ  H7     H7   H  0  1  N  N  N  74.553  75.360  23.855  -12.554   4.691  -1.953  H7     KMQ  47  
KMQ  H8     H8   H  0  1  N  N  N  72.510  78.437  26.003   -7.725  -0.267  -0.807  H8     KMQ  48  
KMQ  H9     H9   H  0  1  N  N  N  70.486  77.225  26.727   -7.050  -0.899   1.352  H9     KMQ  49  
KMQ  H10    H10  H  0  1  N  N  N  71.454  76.102  24.930   -6.665   0.762   3.025  H10    KMQ  50  
KMQ  H11    H11  H  0  1  N  N  N  70.996  79.543  27.547   -6.388   1.359  -1.987  H11    KMQ  51  
KMQ  H12    H12  H  0  1  N  N  N  70.906  81.724  26.702   -5.410   3.184  -0.797  H12    KMQ  52  
KMQ  H13    H13  H  0  1  N  N  N  69.039  78.548  24.410   -4.733   0.871   1.458  H13    KMQ  53  
KMQ  H14    H14  H  0  1  N  N  N  67.131  77.840  25.457   -4.847  -1.589   2.013  H14    KMQ  54  
KMQ  H15    H15  H  0  1  N  N  N  68.215  76.679  26.296   -5.039  -1.928   0.276  H15    KMQ  55  
KMQ  H16    H16  H  0  1  N  N  N  65.390  77.008  28.891   -1.985  -2.333   3.151  H16    KMQ  56  
KMQ  H17    H17  H  0  1  N  N  N  69.236  80.788  31.251    1.476  -3.011   2.135  H17    KMQ  57  
KMQ  H18    H18  H  0  1  N  N  N  67.056  77.197  32.148    3.476  -2.825  -0.315  H18    KMQ  58  
KMQ  H19    H19  H  0  1  N  N  N  67.472  78.452  33.364    2.679  -2.936  -1.902  H19    KMQ  59  
KMQ  H20    H20  H  0  1  N  N  N  64.630  77.633  32.574    3.071  -0.442  -2.187  H20    KMQ  60  
KMQ  H21    H21  H  0  1  N  N  N  63.897  76.889  35.549    4.901   1.340  -1.484  H21    KMQ  61  
KMQ  H22    H22  H  0  1  N  N  N  65.920  79.086  36.008    6.854  -0.965  -1.357  H22    KMQ  62  
KMQ  H23    H23  H  0  1  N  N  N  63.886  78.971  37.155    6.990  -0.332  -3.656  H23    KMQ  63  
KMQ  H24    H24  H  0  1  N  N  N  65.626  79.974  33.889    5.257  -2.520  -1.969  H24    KMQ  64  
KMQ  H25    H25  H  0  1  N  N  N  63.306  80.210  34.166    5.516  -1.766  -4.222  H25    KMQ  65  
KMQ  H26    H26  H  0  1  N  N  N  67.308  78.038  36.928    5.738  -0.572   1.693  H26    KMQ  66  
KMQ  H27    H27  H  0  1  N  N  N  66.835  72.887  40.519    9.027   2.433   3.565  H27    KMQ  67  
KMQ  H28    H28  H  0  1  N  N  N  68.019  73.657  39.700    9.852   3.802   3.046  H28    KMQ  68  
KMQ  H29    H29  H  0  1  N  N  N  63.486  72.808  37.671    8.404   4.615  -1.201  H29    KMQ  69  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
KMQ  C1     C7     SING  N  N   1  
KMQ  C1     C21    DOUB  N  E   2  
KMQ  C3     C21    SING  N  N   3  
KMQ  C3     O2D    SING  N  N   4  
KMQ  O2D    C2D    SING  N  N   5  
KMQ  O3D    C3D    SING  N  N   6  
KMQ  C4D    C3D    SING  N  N   7  
KMQ  C4D    C5D    SING  N  N   8  
KMQ  C4D    O4D    SING  N  N   9  
KMQ  C2D    C3D    SING  N  N  10  
KMQ  C2D    C1D    SING  N  N  11  
KMQ  C5D    O5D    SING  N  N  12  
KMQ  O4D    C1D    SING  N  N  13  
KMQ  O1D    C1D    SING  N  N  14  
KMQ  O5D    PB     SING  N  N  15  
KMQ  O1B    PB     DOUB  N  N  16  
KMQ  PB     O2B    SING  N  N  17  
KMQ  PB     O3A    SING  N  N  18  
KMQ  O2A    PA     DOUB  N  N  19  
KMQ  O3A    PA     SING  N  N  20  
KMQ  PA     O1A    SING  N  N  21  
KMQ  PA     "O5'"  SING  N  N  22  
KMQ  "O5'"  "C5'"  SING  N  N  23  
KMQ  "C5'"  "C4'"  SING  N  N  24  
KMQ  "C4'"  "C3'"  SING  N  N  25  
KMQ  "C4'"  "O4'"  SING  N  N  26  
KMQ  "O3'"  "C3'"  SING  N  N  27  
KMQ  "C3'"  "C2'"  SING  N  N  28  
KMQ  "O4'"  "C1'"  SING  N  N  29  
KMQ  "C1'"  "C2'"  SING  N  N  30  
KMQ  "C1'"  N9     SING  N  N  31  
KMQ  "C2'"  "O2'"  SING  N  N  32  
KMQ  N9     C8     SING  Y  N  33  
KMQ  N9     C4     SING  Y  N  34  
KMQ  N3     C4     DOUB  Y  N  35  
KMQ  N3     C2     SING  Y  N  36  
KMQ  C8     N7     DOUB  Y  N  37  
KMQ  C4     C5     SING  Y  N  38  
KMQ  C2     N1     DOUB  Y  N  39  
KMQ  N7     C5     SING  Y  N  40  
KMQ  C5     C6     DOUB  Y  N  41  
KMQ  N1     C6     SING  Y  N  42  
KMQ  C6     N6     SING  N  N  43  
KMQ  C3     H1     SING  N  N  44  
KMQ  C3     H2     SING  N  N  45  
KMQ  C21    H3     SING  N  N  46  
KMQ  C1     H4     SING  N  N  47  
KMQ  C7     H5     SING  N  N  48  
KMQ  C7     H6     SING  N  N  49  
KMQ  C7     H7     SING  N  N  50  
KMQ  C2D    H8     SING  N  N  51  
KMQ  C3D    H9     SING  N  N  52  
KMQ  O3D    H10    SING  N  N  53  
KMQ  C1D    H11    SING  N  N  54  
KMQ  O1D    H12    SING  N  N  55  
KMQ  C4D    H13    SING  N  N  56  
KMQ  C5D    H14    SING  N  N  57  
KMQ  C5D    H15    SING  N  N  58  
KMQ  O2B    H16    SING  N  N  59  
KMQ  O1A    H17    SING  N  N  60  
KMQ  "C5'"  H18    SING  N  N  61  
KMQ  "C5'"  H19    SING  N  N  62  
KMQ  "C4'"  H20    SING  N  N  63  
KMQ  "C1'"  H21    SING  N  N  64  
KMQ  "C2'"  H22    SING  N  N  65  
KMQ  "O2'"  H23    SING  N  N  66  
KMQ  "C3'"  H24    SING  N  N  67  
KMQ  "O3'"  H25    SING  N  N  68  
KMQ  C8     H26    SING  N  N  69  
KMQ  N6     H27    SING  N  N  70  
KMQ  N6     H28    SING  N  N  71  
KMQ  C2     H29    SING  N  N  72  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
KMQ  InChI             InChI                 1.03   "InChI=1S/C19H29N5O14P2/c1-2-3-4-33-15-13(26)10(37-19(15)28)6-35-40(31,32)38-39(29,30)34-5-9-12(25)14(27)18(36-9)24-8-23-11-16(20)21-7-22-17(11)24/h2-3,7-10,12-15,18-19,25-28H,4-6H2,1H3,(H,29,30)(H,31,32)(H2,20,21,22)/b3-2+/t9-,10-,12-,13-,14-,15-,18-,19+/m1/s1"  
KMQ  InChIKey          InChI                 1.03   JOKNWQJJLFYBKK-YVAUJSGTSA-N  
KMQ  SMILES_CANONICAL  CACTVS                3.385  "C\C=C\CO[C@H]1[C@@H](O)O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3cnc4c(N)ncnc34)[C@H]1O"  
KMQ  SMILES            CACTVS                3.385  "CC=CCO[CH]1[CH](O)O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)n3cnc4c(N)ncnc34)[CH]1O"  
KMQ  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C/C=C/CO[C@@H]1[C@@H]([C@H](O[C@@H]1O)COP(=O)(O)OP(=O)(O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O)O"  
KMQ  SMILES            "OpenEye OEToolkits"  2.0.7  "CC=CCOC1C(C(OC1O)COP(=O)(O)OP(=O)(O)OCC2C(C(C(O2)n3cnc4c3ncnc4N)O)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          KMQ
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{R},4~{R},5~{S})-4-[(~{E})-but-2-enoxy]-3,5-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
KMQ  "Create component"  2019-06-08  EBI   
KMQ  "Initial release"   2020-04-15  RCSB  
##
