data_KNF
# 
_chem_comp.id                                    KNF 
_chem_comp.name                                  "(2~{S},4~{S})-~{N}-[(2~{S})-3,3-dimethyl-1-oxidanyl-butan-2-yl]-9-(4-oxidanylpyrazin-2-yl)-8,9-diazatricyclo[4.3.0.0^{2,4}]nona-1(6),7-diene-7-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H23 N5 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-10-03 
_chem_comp.pdbx_modified_date                    2023-05-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        357.407 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     KNF 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8GUQ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
KNF C5  C1  C 0  1 Y N N 135.152 122.058 97.986  -0.176 1.037  0.059  C5  KNF 1  
KNF C1  C2  C 0  1 Y N N 130.637 118.269 99.808  4.668  -2.699 -0.194 C1  KNF 2  
KNF N1  N1  N 1  1 Y N N 131.783 118.002 99.072  3.464  -3.032 0.245  N1  KNF 3  
KNF O1  O1  O -1 1 N N N 132.015 116.813 98.673  3.198  -4.366 0.637  O1  KNF 4  
KNF C2  C3  C 0  1 Y N N 132.687 119.025 98.772  2.510  -2.120 0.317  C2  KNF 5  
KNF N2  N2  N 0  1 Y N N 131.340 120.571 99.914  3.980  -0.481 -0.508 N2  KNF 6  
KNF O2  O2  O 0  1 N N N 138.600 121.082 93.589  -4.084 -0.969 2.008  O2  KNF 7  
KNF C3  C4  C 0  1 Y N N 132.448 120.324 99.196  2.773  -0.811 -0.068 C3  KNF 8  
KNF N3  N3  N 0  1 Y N N 133.353 121.261 98.877  1.766  0.157  0.006  N3  KNF 9  
KNF O3  O3  O 0  1 N N N 136.882 123.196 97.119  -2.153 2.277  0.140  O3  KNF 10 
KNF C4  C5  C 0  1 Y N N 130.418 119.567 100.227 4.930  -1.398 -0.578 C4  KNF 11 
KNF N4  N4  N 0  1 Y N N 134.445 120.957 98.158  0.506  -0.086 -0.034 N4  KNF 12 
KNF N5  N5  N 0  1 N N N 136.792 120.989 96.800  -2.425 0.083  -0.072 N5  KNF 13 
KNF C6  C6  C 0  1 Y N N 134.502 123.062 98.570  0.770  2.087  0.170  C6  KNF 14 
KNF C7  C7  C 0  1 Y N N 133.390 122.572 99.176  1.979  1.499  0.134  C7  KNF 15 
KNF C8  C8  C 0  1 N N S 132.612 123.605 99.856  3.080  2.523  0.246  C8  KNF 16 
KNF C9  C9  C 0  1 N N S 133.113 124.618 98.856  2.398  3.896  0.352  C9  KNF 17 
KNF C10 C10 C 0  1 N N N 134.527 124.372 98.929  0.895  3.581  0.308  C10 KNF 18 
KNF C11 C11 C 0  1 N N N 136.305 122.130 97.304  -1.646 1.176  0.045  C11 KNF 19 
KNF C12 C12 C 0  1 N N S 138.054 121.044 96.047  -3.884 0.221  -0.086 C12 KNF 20 
KNF C13 C13 C 0  1 N N N 138.932 119.840 96.446  -4.502 -0.970 -0.821 C13 KNF 21 
KNF C14 C14 C 0  1 N N N 137.573 121.038 94.579  -4.406 0.259  1.352  C14 KNF 22 
KNF C15 C15 C 0  1 N N N 139.070 119.866 97.964  -4.002 -2.272 -0.194 C15 KNF 23 
KNF C16 C16 C 0  1 N N N 140.384 119.946 95.960  -6.026 -0.902 -0.710 C16 KNF 24 
KNF C17 C17 C 0  1 N N N 138.323 118.545 95.932  -4.095 -0.925 -2.296 C17 KNF 25 
KNF C18 C18 C 0  1 N N N 133.006 125.004 100.307 3.251  3.554  -0.872 C18 KNF 26 
KNF H1  H1  H 0  1 N N N 129.935 117.483 100.047 5.447  -3.444 -0.249 H1  KNF 27 
KNF H3  H3  H 0  1 N N N 133.579 118.802 98.205  1.528  -2.391 0.675  H3  KNF 28 
KNF H4  H4  H 0  1 N N N 138.207 121.075 92.724  -4.386 -1.015 2.926  H4  KNF 29 
KNF H5  H5  H 0  1 N N N 129.533 119.807 100.797 5.915  -1.128 -0.932 H5  KNF 30 
KNF H6  H6  H 0  1 N N N 136.310 120.123 96.932  -2.021 -0.795 -0.147 H6  KNF 31 
KNF H7  H7  H 0  1 N N N 131.523 123.451 99.817  3.941  2.264  0.862  H7  KNF 32 
KNF H8  H8  H 0  1 N N N 132.537 125.049 98.023  2.736  4.652  1.062  H8  KNF 33 
KNF H9  H9  H 0  1 N N N 134.925 124.520 99.944  0.436  4.075  -0.548 H9  KNF 34 
KNF H10 H10 H 0  1 N N N 135.096 124.989 98.218  0.417  3.912  1.230  H10 KNF 35 
KNF H11 H11 H 0  1 N N N 138.592 121.981 96.257  -4.156 1.145  -0.596 H11 KNF 36 
KNF H12 H12 H 0  1 N N N 136.925 121.915 94.432  -5.488 0.393  1.342  H12 KNF 37 
KNF H13 H13 H 0  1 N N N 136.989 120.120 94.419  -3.942 1.089  1.885  H13 KNF 38 
KNF H14 H14 H 0  1 N N N 139.514 120.823 98.276  -4.441 -2.391 0.797  H14 KNF 39 
KNF H15 H15 H 0  1 N N N 138.077 119.756 98.424  -4.293 -3.114 -0.823 H15 KNF 40 
KNF H16 H16 H 0  1 N N N 139.718 119.038 98.287  -2.916 -2.241 -0.108 H16 KNF 41 
KNF H17 H17 H 0  1 N N N 140.828 120.882 96.330  -6.383 0.026  -1.157 H17 KNF 42 
KNF H18 H18 H 0  1 N N N 140.961 119.091 96.341  -6.467 -1.750 -1.235 H18 KNF 43 
KNF H19 H19 H 0  1 N N N 140.404 119.941 94.860  -6.316 -0.934 0.340  H19 KNF 44 
KNF H20 H20 H 0  1 N N N 137.282 118.466 96.279  -3.009 -0.973 -2.375 H20 KNF 45 
KNF H21 H21 H 0  1 N N N 138.344 118.541 94.832  -4.536 -1.773 -2.820 H21 KNF 46 
KNF H22 H22 H 0  1 N N N 138.902 117.691 96.313  -4.452 0.003  -2.743 H22 KNF 47 
KNF H23 H23 H 0  1 N N N 133.917 125.153 100.906 4.222  4.043  -0.960 H23 KNF 48 
KNF H24 H24 H 0  1 N N N 132.233 125.716 100.632 2.731  3.369  -1.811 H24 KNF 49 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
KNF O2  C14 SING N N 1  
KNF C14 C12 SING N N 2  
KNF C17 C13 SING N N 3  
KNF C16 C13 SING N N 4  
KNF C12 C13 SING N N 5  
KNF C12 N5  SING N N 6  
KNF C13 C15 SING N N 7  
KNF N5  C11 SING N N 8  
KNF O3  C11 DOUB N N 9  
KNF C11 C5  SING N N 10 
KNF C5  N4  DOUB Y N 11 
KNF C5  C6  SING Y N 12 
KNF N4  N3  SING Y N 13 
KNF C6  C10 SING N N 14 
KNF C6  C7  DOUB Y N 15 
KNF O1  N1  SING N N 16 
KNF C2  N1  DOUB Y N 17 
KNF C2  C3  SING Y N 18 
KNF C9  C10 SING N N 19 
KNF C9  C8  SING N N 20 
KNF C9  C18 SING N N 21 
KNF N3  C7  SING Y N 22 
KNF N3  C3  SING N N 23 
KNF N1  C1  SING Y N 24 
KNF C7  C8  SING N N 25 
KNF C3  N2  DOUB Y N 26 
KNF C1  C4  DOUB Y N 27 
KNF C8  C18 SING N N 28 
KNF N2  C4  SING Y N 29 
KNF C1  H1  SING N N 30 
KNF C2  H3  SING N N 31 
KNF O2  H4  SING N N 32 
KNF C4  H5  SING N N 33 
KNF N5  H6  SING N N 34 
KNF C8  H7  SING N N 35 
KNF C9  H8  SING N N 36 
KNF C10 H9  SING N N 37 
KNF C10 H10 SING N N 38 
KNF C12 H11 SING N N 39 
KNF C14 H12 SING N N 40 
KNF C14 H13 SING N N 41 
KNF C15 H14 SING N N 42 
KNF C15 H15 SING N N 43 
KNF C15 H16 SING N N 44 
KNF C16 H17 SING N N 45 
KNF C16 H18 SING N N 46 
KNF C16 H19 SING N N 47 
KNF C17 H20 SING N N 48 
KNF C17 H21 SING N N 49 
KNF C17 H22 SING N N 50 
KNF C18 H23 SING N N 51 
KNF C18 H24 SING N N 52 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
KNF InChI            InChI                1.06  "InChI=1S/C18H23N5O3/c1-18(2,3)13(9-24)20-17(25)15-12-7-10-6-11(10)16(12)23(21-15)14-8-22(26)5-4-19-14/h4-5,8,10-11,13,24H,6-7,9H2,1-3H3,(H,20,25)/t10-,11-,13+/m0/s1" 
KNF InChIKey         InChI                1.06  ACSQLTBPYZSGBA-GMXVVIOVSA-N                                                                                                                                            
KNF SMILES_CANONICAL CACTVS               3.385 "CC(C)(C)[C@@H](CO)NC(=O)c1nn(c2c[n+]([O-])ccn2)c3[C@H]4C[C@H]4Cc13"                                                                                                   
KNF SMILES           CACTVS               3.385 "CC(C)(C)[CH](CO)NC(=O)c1nn(c2c[n+]([O-])ccn2)c3[CH]4C[CH]4Cc13"                                                                                                       
KNF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(C)[C@@H](CO)NC(=O)c1c2c(n(n1)c3c[n+](ccn3)[O-])[C@H]4C[C@H]4C2"                                                                                                 
KNF SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)(C)C(CO)NC(=O)c1c2c(n(n1)c3c[n+](ccn3)[O-])C4CC4C2"                                                                                                              
# 
_pdbx_chem_comp_identifier.comp_id           KNF 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S},4~{S})-~{N}-[(2~{S})-3,3-dimethyl-1-oxidanyl-butan-2-yl]-9-(4-oxidanidylpyrazin-4-ium-2-yl)-8,9-diazatricyclo[4.3.0.0^{2,4}]nona-1(6),7-diene-7-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
KNF "Create component" 2022-10-03 PDBJ 
KNF "Initial release"  2023-05-10 RCSB 
# 
