data_KSB
#

_chem_comp.id                                   KSB
_chem_comp.name                                 lambda-[Ru(tap2-dppz-CN]2+
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C39 H21 N13 Ru"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "Cyano-derivative of Ruthenium-dipyridophenazine"
_chem_comp.pdbx_formal_charge                   6
_chem_comp.pdbx_initial_date                    2016-08-23
_chem_comp.pdbx_modified_date                   2019-08-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  OBS
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       772.741
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    KSB
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5LS8
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
KSB  C1   C1   C   0  1  Y  N  N  18.489  19.084   3.028   1.189   0.771  -0.213  C1   KSB   1  
KSB  C10  C2   C   0  1  Y  N  N  19.686  18.641   3.479   1.153  -0.126   0.924  C10  KSB   2  
KSB  C11  C3   C   0  1  Y  N  N  22.072  17.759   4.204   1.020  -1.686   3.172  C11  KSB   3  
KSB  C12  C4   C   0  1  Y  N  N  21.842  17.995   2.835  -0.102  -1.319   2.442  C12  KSB   4  
KSB  C13  C5   C   0  1  Y  N  N  17.870  18.748   7.948   5.932  -0.327   0.934  C13  KSB   5  
KSB  C14  C6   C   0  1  Y  N  N  18.016  18.561   9.318   7.139  -0.860   1.423  C14  KSB   6  
KSB  C15  C7   C   0  1  Y  N  N  16.659  19.211   7.442   5.968   0.563  -0.231  C15  KSB   7  
KSB  C16  C8   C   0  1  Y  N  N  15.591  19.483   8.296   7.206   0.850  -0.827  C16  KSB   8  
KSB  C17  C9   C   0  1  Y  N  N  15.734  19.275   9.669   8.360   0.288  -0.313  C17  KSB   9  
KSB  C18  C10  C   0  1  Y  N  N  16.948  18.826  10.174   8.313  -0.564   0.813  C18  KSB  10  
KSB  C19  C11  C   0  1  Y  N  N  21.760  20.971   0.445  -1.765  -2.533  -0.858  C19  KSB  11  
KSB  C2   C12  C   0  1  Y  N  N  17.326  19.680   1.127   0.030   2.017  -1.764  C2   KSB  12  
KSB  C20  C13  C   0  1  Y  N  N  19.861  21.630   1.595  -0.139  -1.631  -2.172  C20  KSB  13  
KSB  C21  C14  C   0  1  Y  N  N  20.412  22.920   1.627  -0.030  -2.836  -2.862  C21  KSB  14  
KSB  C22  C15  C   0  1  Y  N  N  22.305  22.233   0.473  -1.663  -3.763  -1.549  C22  KSB  15  
KSB  C23  C16  C   0  1  Y  N  N  23.550  22.412  -0.133  -2.495  -4.840  -1.162  C23  KSB  16  
KSB  C24  C17  C   0  1  Y  N  N  24.203  21.329  -0.742  -3.391  -4.711  -0.152  C24  KSB  17  
KSB  C25  C18  C   0  1  Y  N  N  23.610  20.067  -0.749  -3.529  -3.494   0.558  C25  KSB  18  
KSB  C26  C19  C   0  1  Y  N  N  22.388  19.925  -0.144  -2.712  -2.393   0.212  C26  KSB  19  
KSB  C27  C20  C   0  1  Y  N  N  23.497  17.794  -1.259  -4.498  -2.195   2.178  C27  KSB  20  
KSB  C28  C21  C   0  1  Y  N  N  22.248  17.655  -0.638  -3.684  -1.125   1.826  C28  KSB  21  
KSB  C29  C22  C   0  1  Y  N  N  19.215  16.943  -0.923  -2.998   2.239   0.620  C29  KSB  22  
KSB  C3   C23  C   0  1  Y  N  N  16.218  19.969   1.935   1.190   2.587  -2.260  C3   KSB  23  
KSB  C30  C24  C   0  1  Y  N  N  19.951  16.048   1.091  -1.691   1.952   2.459  C30  KSB  24  
KSB  C31  C25  C   0  1  Y  N  N  19.640  14.782   0.565  -2.296   3.055   3.058  C31  KSB  25  
KSB  C32  C26  C   0  1  Y  N  N  18.913  15.714  -1.447  -3.622   3.362   1.215  C32  KSB  26  
KSB  C33  C27  C   0  1  Y  N  N  18.398  15.675  -2.744  -4.629   4.050   0.500  C33  KSB  27  
KSB  C34  C28  C   0  1  Y  N  N  18.197  16.860  -3.469  -5.004   3.664  -0.743  C34  KSB  28  
KSB  C35  C29  C   0  1  Y  N  N  18.525  18.092  -2.897  -4.404   2.552  -1.383  C35  KSB  29  
KSB  C36  C30  C   0  1  Y  N  N  19.034  18.090  -1.621  -3.396   1.829  -0.699  C36  KSB  30  
KSB  C37  C31  C   0  1  Y  N  N  18.724  20.402  -2.837  -4.165   1.121  -3.154  C37  KSB  31  
KSB  C38  C32  C   0  1  Y  N  N  19.250  20.384  -1.530  -3.178   0.417  -2.467  C38  KSB  32  
KSB  C39  C33  C   0  1  N  N  N  14.766  19.524  10.488   9.622   0.571  -0.933  C39  KSB  33  
KSB  C4   C34  C   0  1  Y  N  N  16.242  19.809   3.320   2.409   2.194  -1.741  C4   KSB  34  
KSB  C5   C35  C   0  1  Y  N  N  17.413  19.348   3.884   2.416   1.250  -0.713  C5   KSB  35  
KSB  C6   C36  C   0  1  Y  N  N  17.561  19.145   5.258   3.683   0.741  -0.165  C6   KSB  36  
KSB  C7   C37  C   0  1  Y  N  N  18.785  18.676   5.745   3.648  -0.151   0.993  C7   KSB  37  
KSB  C8   C38  C   0  1  Y  N  N  19.857  18.420   4.840   2.344  -0.533   1.561  C8   KSB  38  
KSB  C9   C39  C   0  1  Y  N  N  21.113  17.960   5.210   2.269  -1.311   2.720  C9   KSB  39  
KSB  N1   N1   N   1  1  Y  N  N  20.647  18.443   2.447  -0.008  -0.577   1.350  N1   KSB  40  
KSB  N10  N2   N   0  1  Y  N  N  19.134  14.623  -0.678  -3.237   3.732   2.437  N10  KSB  41  
KSB  N11  N3   N   0  1  Y  N  N  18.372  19.286  -3.513  -4.755   2.163  -2.608  N11  KSB  42  
KSB  N12  N4   N   1  1  Y  N  N  19.399  19.219  -0.896  -2.816   0.786  -1.256  N12  KSB  43  
KSB  N2   N5   N   1  1  Y  N  N  18.474  19.226   1.638   0.058   1.121  -0.788  N2   KSB  44  
KSB  N3   N6   N   0  1  Y  N  N  16.528  19.401   6.099   4.836   1.072  -0.714  N3   KSB  45  
KSB  N4   N7   N   0  1  Y  N  N  18.904  18.488   7.089   4.769  -0.627   1.504  N4   KSB  46  
KSB  N5   N8   N   1  1  Y  N  N  20.532  20.632   1.000  -1.006  -1.512  -1.183  N5   KSB  47  
KSB  N6   N9   N   0  1  Y  N  N  21.607  23.217   1.081  -0.783  -3.870  -2.545  N6   KSB  48  
KSB  N7   N10  N   0  1  Y  N  N  24.157  18.969  -1.308  -4.412  -3.351   1.548  N7   KSB  49  
KSB  N74  N11  N   0  1  N  N  N  13.898  19.746  11.232  10.622   0.795  -1.424  N74  KSB  50  
KSB  N8   N12  N   1  1  Y  N  N  21.687  18.725  -0.065  -2.806  -1.250   0.850  N8   KSB  51  
KSB  N9   N13  N   1  1  Y  N  N  19.724  17.146   0.352  -2.059   1.567   1.251  N9   KSB  52  
KSB  RU   RU1  RU  0  0  N  N  N  20.073  18.879   0.766  -1.452   0.045   0.052  RU   KSB  53  
KSB  H1   H1   H   0  1  N  N  N  23.047  17.401   4.499   0.915  -2.266   4.075  H1   KSB  54  
KSB  H2   H2   H   0  1  N  N  N  22.622  17.816   2.110  -1.081  -1.635   2.782  H2   KSB  55  
KSB  H3   H3   H   0  1  N  N  N  18.956  18.211   9.719   7.130  -1.510   2.287  H3   KSB  56  
KSB  H4   H4   H   0  1  N  N  N  14.658  19.853   7.897   7.257   1.504  -1.684  H4   KSB  57  
KSB  H5   H5   H   0  1  N  N  N  17.065  18.681  11.238   9.233  -0.989   1.194  H5   KSB  58  
KSB  H6   H6   H   0  1  N  N  N  17.250  19.829   0.060  -0.925   2.310  -2.184  H6   KSB  59  
KSB  H7   H7   H   0  1  N  N  N  18.899  21.441   2.048   0.487  -0.795  -2.445  H7   KSB  60  
KSB  H8   H8   H   0  1  N  N  N  19.854  23.709   2.110   0.684  -2.925  -3.671  H8   KSB  61  
KSB  H9   H9   H   0  1  N  N  N  24.013  23.388  -0.133  -2.417  -5.786  -1.682  H9   KSB  62  
KSB  H10  H10  H   0  1  N  N  N  25.167  21.474  -1.206  -4.011  -5.556   0.116  H10  KSB  63  
KSB  H11  H11  H   0  1  N  N  N  23.948  16.926  -1.716  -5.214  -2.079   2.981  H11  KSB  64  
KSB  H12  H12  H   0  1  N  N  N  21.747  16.699  -0.623  -3.770  -0.187   2.356  H12  KSB  65  
KSB  H13  H13  H   0  1  N  N  N  15.313  20.329   1.468   1.140   3.330  -3.040  H13  KSB  66  
KSB  H14  H14  H   0  1  N  N  N  20.370  16.137   2.083  -0.920   1.410   2.986  H14  KSB  67  
KSB  H15  H15  H   0  1  N  N  N  19.811  13.907   1.175  -1.988   3.358   4.050  H15  KSB  68  
KSB  H16  H16  H   0  1  N  N  N  18.152  14.724  -3.194  -5.113   4.906   0.956  H16  KSB  69  
KSB  H17  H17  H   0  1  N  N  N  17.789  16.820  -4.468  -5.780   4.218  -1.258  H17  KSB  70  
KSB  H18  H18  H   0  1  N  N  N  18.595  21.357  -3.324  -4.451   0.806  -4.148  H18  KSB  71  
KSB  H19  H19  H   0  1  N  N  N  19.531  21.307  -1.044  -2.706  -0.437  -2.931  H19  KSB  72  
KSB  H20  H20  H   0  1  N  N  N  15.378  20.037   3.927   3.329   2.607  -2.118  H20  KSB  73  
KSB  H21  H21  H   0  1  N  N  N  21.347  17.762   6.246   3.160  -1.608   3.246  H21  KSB  74  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
KSB  N11  C35  DOUB  Y  N   1  
KSB  N11  C37  SING  Y  N   2  
KSB  C34  C35  SING  Y  N   3  
KSB  C34  C33  DOUB  Y  N   4  
KSB  C35  C36  SING  Y  N   5  
KSB  C37  C38  DOUB  Y  N   6  
KSB  C33  C32  SING  Y  N   7  
KSB  C36  C29  SING  Y  N   8  
KSB  C36  N12  DOUB  Y  N   9  
KSB  C38  N12  SING  Y  N  10  
KSB  C32  C29  DOUB  Y  N  11  
KSB  C32  N10  SING  Y  N  12  
KSB  N7   C27  DOUB  Y  N  13  
KSB  N7   C25  SING  Y  N  14  
KSB  C27  C28  SING  Y  N  15  
KSB  C29  N9   SING  Y  N  16  
KSB  N12  RU   SING  N  N  17  
KSB  C25  C24  DOUB  Y  N  18  
KSB  C25  C26  SING  Y  N  19  
KSB  C24  C23  SING  Y  N  20  
KSB  N10  C31  DOUB  Y  N  21  
KSB  C28  N8   DOUB  Y  N  22  
KSB  C26  N8   SING  Y  N  23  
KSB  C26  C19  DOUB  Y  N  24  
KSB  C23  C22  DOUB  Y  N  25  
KSB  N8   RU   SING  N  N  26  
KSB  N9   RU   SING  N  N  27  
KSB  N9   C30  DOUB  Y  N  28  
KSB  C19  C22  SING  Y  N  29  
KSB  C19  N5   SING  Y  N  30  
KSB  C22  N6   SING  Y  N  31  
KSB  C31  C30  SING  Y  N  32  
KSB  RU   N5   SING  N  N  33  
KSB  RU   N2   SING  N  N  34  
KSB  RU   N1   SING  N  N  35  
KSB  N5   C20  DOUB  Y  N  36  
KSB  N6   C21  DOUB  Y  N  37  
KSB  C2   N2   DOUB  Y  N  38  
KSB  C2   C3   SING  Y  N  39  
KSB  C20  C21  SING  Y  N  40  
KSB  N2   C1   SING  Y  N  41  
KSB  C3   C4   DOUB  Y  N  42  
KSB  N1   C12  DOUB  Y  N  43  
KSB  N1   C10  SING  Y  N  44  
KSB  C12  C11  SING  Y  N  45  
KSB  C1   C10  DOUB  Y  N  46  
KSB  C1   C5   SING  Y  N  47  
KSB  C4   C5   SING  Y  N  48  
KSB  C10  C8   SING  Y  N  49  
KSB  C5   C6   DOUB  Y  N  50  
KSB  C11  C9   DOUB  Y  N  51  
KSB  C8   C9   SING  Y  N  52  
KSB  C8   C7   DOUB  Y  N  53  
KSB  C6   C7   SING  Y  N  54  
KSB  C6   N3   SING  Y  N  55  
KSB  C7   N4   SING  Y  N  56  
KSB  N3   C15  DOUB  Y  N  57  
KSB  N4   C13  DOUB  Y  N  58  
KSB  C15  C13  SING  Y  N  59  
KSB  C15  C16  SING  Y  N  60  
KSB  C13  C14  SING  Y  N  61  
KSB  C16  C17  DOUB  Y  N  62  
KSB  C14  C18  DOUB  Y  N  63  
KSB  C17  C18  SING  Y  N  64  
KSB  C17  C39  SING  N  N  65  
KSB  C39  N74  TRIP  N  N  66  
KSB  C11  H1   SING  N  N  67  
KSB  C12  H2   SING  N  N  68  
KSB  C14  H3   SING  N  N  69  
KSB  C16  H4   SING  N  N  70  
KSB  C18  H5   SING  N  N  71  
KSB  C2   H6   SING  N  N  72  
KSB  C20  H7   SING  N  N  73  
KSB  C21  H8   SING  N  N  74  
KSB  C23  H9   SING  N  N  75  
KSB  C24  H10  SING  N  N  76  
KSB  C27  H11  SING  N  N  77  
KSB  C28  H12  SING  N  N  78  
KSB  C3   H13  SING  N  N  79  
KSB  C30  H14  SING  N  N  80  
KSB  C31  H15  SING  N  N  81  
KSB  C33  H16  SING  N  N  82  
KSB  C34  H17  SING  N  N  83  
KSB  C37  H18  SING  N  N  84  
KSB  C38  H19  SING  N  N  85  
KSB  C4   H20  SING  N  N  86  
KSB  C9   H21  SING  N  N  87  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
KSB  InChI             InChI                 1.03   "InChI=1S/C19H9N5.2C10H6N4.Ru/c20-10-11-5-6-14-15(9-11)24-19-13-4-2-8-22-17(13)16-12(18(19)23-14)3-1-7-21-16;2*1-2-8-10(14-6-4-12-8)9-7(1)11-3-5-13-9;/h1-9H;2*1-6H;/q;;;+6"  
KSB  InChIKey          InChI                 1.03   HNFPSJMHTKCUIN-UHFFFAOYSA-N  
KSB  SMILES_CANONICAL  CACTVS                3.385  "N#Cc1ccc2nc3c4ccc[n+]5c4c6c(ccc[n+]6[Ru]578([n+]9ccnc%10ccc%11ncc[n+]7c%11c9%10)[n+]%12ccnc%13ccc%14ncc[n+]8c%14c%12%13)c3nc2c1"  
KSB  SMILES            CACTVS                3.385  "N#Cc1ccc2nc3c4ccc[n+]5c4c6c(ccc[n+]6[Ru]578([n+]9ccnc%10ccc%11ncc[n+]7c%11c9%10)[n+]%12ccnc%13ccc%14ncc[n+]8c%14c%12%13)c3nc2c1"  
KSB  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.5  "c1cc2c3c(c4ccc[n+]5c4c2[n+](c1)[Ru]567([n+]8ccnc9c8c1[n+]6ccnc1cc9)[n+]1ccnc2c1c1[n+]7ccnc1cc2)nc1cc(ccc1n3)C#N"  
KSB  SMILES            "OpenEye OEToolkits"  2.0.5  "c1cc2c3c(c4ccc[n+]5c4c2[n+](c1)[Ru]567([n+]8ccnc9c8c1[n+]6ccnc1cc9)[n+]1ccnc2c1c1[n+]7ccnc1cc2)nc1cc(ccc1n3)C#N"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
KSB  "Create component"    2016-08-23  RCSB  
KSB  "Modify name"         2016-11-24  EBI   
KSB  "Initial release"     2018-01-17  RCSB  
KSB  "Obsolete component"  2019-08-13  EBI   
##
