data_LA2
#

_chem_comp.id                                   LA2
_chem_comp.name                                 "N~6~-[(6R)-6,8-disulfanyloctanoyl]-L-lysine"
_chem_comp.type                                 "L-peptide linking"
_chem_comp.pdbx_type                            ATOMP
_chem_comp.formula                              "C14 H28 N2 O3 S2"
_chem_comp.mon_nstd_parent_comp_id              LYS
_chem_comp.pdbx_synonyms                        lipoyllysine
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2008-04-16
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       336.514
_chem_comp.one_letter_code                      K
_chem_comp.three_letter_code                    LA2
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3CRK
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LA2  CB   CB   C  0  1  N  N  N  75.569  85.206  61.601    6.601   0.298   0.207  CB   LA2   1  
LA2  C    C    C  0  1  N  N  N  76.283  86.513  59.613    9.075   0.417   0.099  C    LA2   2  
LA2  O    O    O  0  1  N  N  N  75.429  87.301  59.196    9.733   0.030   1.036  O    LA2   3  
LA2  N    N    N  0  1  N  N  N  76.890  84.099  59.893    7.958  -1.740   0.157  N    LA2   4  
LA2  CA   CA   C  0  1  N  N  S  75.880  85.138  60.105    7.865  -0.363  -0.346  CA   LA2   5  
LA2  O1   O1   O  0  1  N  N  N  71.019  81.996  62.711    0.355  -1.255  -0.925  O1   LA2   6  
LA2  C1   C1   C  0  1  N  N  N  70.786  82.491  61.618    0.445  -0.310  -0.170  C1   LA2   7  
LA2  NZ   NZ   N  0  1  N  N  N  71.490  83.494  61.105    1.658   0.157   0.183  NZ   LA2   8  
LA2  CE   CE   C  0  1  N  N  N  72.618  84.189  61.705    2.869  -0.475  -0.346  CE   LA2   9  
LA2  CD   CD   C  0  1  N  N  N  73.844  83.325  61.436    4.103   0.241   0.207  CD   LA2  10  
LA2  CG   CG   C  0  1  N  N  N  75.071  83.872  62.163    5.367  -0.419  -0.346  CG   LA2  11  
LA2  C2   C2   C  0  1  N  N  N  69.656  81.979  60.759   -0.801   0.340   0.375  C2   LA2  12  
LA2  C3   C3   C  0  1  N  N  N  68.338  82.161  61.506   -2.034  -0.377  -0.178  C3   LA2  13  
LA2  C4   C4   C  0  1  N  N  N  67.297  82.855  60.640   -3.299   0.284   0.375  C4   LA2  14  
LA2  C5   C5   C  0  1  N  N  N  65.901  82.688  61.238   -4.532  -0.433  -0.178  C5   LA2  15  
LA2  C6   C6   C  0  1  N  N  R  65.017  83.889  60.919   -5.797   0.227   0.375  C6   LA2  16  
LA2  S6   S6   S  0  1  N  N  N  64.636  83.910  59.173   -5.911   1.928  -0.246  S6   LA2  17  
LA2  C7   C7   C  0  1  N  N  N  63.713  83.809  61.704   -7.025  -0.565  -0.077  C7   LA2  18  
LA2  C8   C8   C  0  1  N  N  N  63.638  84.933  62.730   -8.278   0.021   0.576  C8   LA2  19  
LA2  S8   S8   S  0  1  N  N  N  62.786  86.372  62.037   -9.735  -0.918   0.041  S8   LA2  20  
LA2  HB   HB   H  0  1  N  N  N  74.787  85.963  61.759    6.602   0.231   1.295  HB   LA2  21  
LA2  HBA  HBA  H  0  1  N  N  N  76.502  85.461  62.125    6.577   1.345  -0.093  HBA  LA2  22  
LA2  OXT  OXT  O  0  1  N  Y  N  77.660  86.900  59.631    9.422   1.543  -0.544  OXT  LA2  23  
LA2  HN   HN   H  0  1  N  N  N  77.120  84.051  58.921    8.750  -2.219  -0.245  HN   LA2  24  
LA2  HNA  HNA  H  0  1  N  Y  N  77.711  84.320  60.419    7.999  -1.755   1.165  HNA  LA2  25  
LA2  HA   HA   H  0  1  N  N  N  75.000  84.854  59.510    7.822  -0.376  -1.435  HA   LA2  26  
LA2  HNZ  HNZ  H  0  1  N  N  N  71.211  83.809  60.198    1.730   0.912   0.788  HNZ  LA2  27  
LA2  HE   HE   H  0  1  N  N  N  72.741  85.185  61.255    2.893  -1.523  -0.046  HE   LA2  28  
LA2  HEA  HEA  H  0  1  N  N  N  72.465  84.340  62.784    2.868  -0.409  -1.434  HEA  LA2  29  
LA2  HD   HD   H  0  1  N  N  N  73.645  82.303  61.790    4.079   1.289  -0.093  HD   LA2  30  
LA2  HDA  HDA  H  0  1  N  N  N  74.046  83.330  60.355    4.104   0.175   1.295  HDA  LA2  31  
LA2  HG   HG   H  0  1  N  N  N  75.883  83.136  62.067    5.366  -0.353  -1.434  HG   LA2  32  
LA2  HGA  HGA  H  0  1  N  N  N  74.779  84.048  63.209    5.391  -1.467  -0.046  HGA  LA2  33  
LA2  H2   H2   H  0  1  N  N  N  69.626  82.543  59.815   -0.799   0.274   1.463  H2   LA2  34  
LA2  H2A  H2A  H  0  1  N  N  N  69.812  80.913  60.539   -0.825   1.388   0.075  H2A  LA2  35  
LA2  H3   H3   H  0  1  N  N  N  67.955  81.171  61.796   -2.036  -0.310  -1.266  H3   LA2  36  
LA2  H3A  H3A  H  0  1  N  N  N  68.525  82.787  62.391   -2.010  -1.424   0.122  H3A  LA2  37  
LA2  H4   H4   H  0  1  N  N  N  67.536  83.927  60.579   -3.297   0.218   1.463  H4   LA2  38  
LA2  H4A  H4A  H  0  1  N  N  N  67.310  82.402  59.638   -3.322   1.331   0.075  H4A  LA2  39  
LA2  H5   H5   H  0  1  N  N  N  65.439  81.783  60.816   -4.534  -0.367  -1.266  H5   LA2  40  
LA2  H5A  H5A  H  0  1  N  N  N  65.997  82.605  62.331   -4.508  -1.481   0.122  H5A  LA2  41  
LA2  H6   H6   H  0  1  N  N  N  65.558  84.805  61.199   -5.753   0.240   1.464  H6   LA2  42  
LA2  HS6  HS6  H  0  1  N  N  N  63.346  83.915  59.010   -5.957   1.761  -1.580  HS6  LA2  43  
LA2  H7   H7   H  0  1  N  N  N  62.867  83.900  61.007   -7.118  -0.503  -1.161  H7   LA2  44  
LA2  H7A  H7A  H  0  1  N  N  N  63.672  82.844  62.230   -6.914  -1.608   0.220  H7A  LA2  45  
LA2  H8   H8   H  0  1  N  N  N  63.086  84.578  63.613   -8.185  -0.040   1.661  H8   LA2  46  
LA2  H8A  H8A  H  0  1  N  N  N  64.660  85.227  63.011   -8.389   1.064   0.280  H8A  LA2  47  
LA2  HS8  HS8  H  0  1  N  N  N  62.582  87.249  62.975  -10.744  -0.303   0.682  HS8  LA2  48  
LA2  HXT  HXT  H  0  1  N  Y  N  77.746  87.784  59.293   10.206   2.009  -0.222  HXT  LA2  49  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LA2  CB   CG   SING  N  N   1  
LA2  CB   HB   SING  N  N   2  
LA2  CB   HBA  SING  N  N   3  
LA2  C    CA   SING  N  N   4  
LA2  C    OXT  SING  N  N   5  
LA2  O    C    DOUB  N  N   6  
LA2  N    CA   SING  N  N   7  
LA2  N    HN   SING  N  N   8  
LA2  N    HNA  SING  N  N   9  
LA2  CA   CB   SING  N  N  10  
LA2  CA   HA   SING  N  N  11  
LA2  C1   O1   DOUB  N  N  12  
LA2  NZ   C1   SING  N  N  13  
LA2  NZ   CE   SING  N  N  14  
LA2  NZ   HNZ  SING  N  N  15  
LA2  CE   HE   SING  N  N  16  
LA2  CE   HEA  SING  N  N  17  
LA2  CD   CE   SING  N  N  18  
LA2  CD   CG   SING  N  N  19  
LA2  CD   HD   SING  N  N  20  
LA2  CD   HDA  SING  N  N  21  
LA2  CG   HG   SING  N  N  22  
LA2  CG   HGA  SING  N  N  23  
LA2  C2   C1   SING  N  N  24  
LA2  C2   C3   SING  N  N  25  
LA2  C2   H2   SING  N  N  26  
LA2  C2   H2A  SING  N  N  27  
LA2  C3   H3   SING  N  N  28  
LA2  C3   H3A  SING  N  N  29  
LA2  C4   C3   SING  N  N  30  
LA2  C4   C5   SING  N  N  31  
LA2  C4   H4   SING  N  N  32  
LA2  C4   H4A  SING  N  N  33  
LA2  C5   H5   SING  N  N  34  
LA2  C5   H5A  SING  N  N  35  
LA2  C6   C5   SING  N  N  36  
LA2  C6   C7   SING  N  N  37  
LA2  C6   H6   SING  N  N  38  
LA2  S6   C6   SING  N  N  39  
LA2  S6   HS6  SING  N  N  40  
LA2  C7   C8   SING  N  N  41  
LA2  C7   H7   SING  N  N  42  
LA2  C7   H7A  SING  N  N  43  
LA2  C8   H8   SING  N  N  44  
LA2  C8   H8A  SING  N  N  45  
LA2  S8   C8   SING  N  N  46  
LA2  S8   HS8  SING  N  N  47  
LA2  OXT  HXT  SING  N  N  48  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LA2  SMILES            ACDLabs               10.04  "O=C(O)C(N)CCCCNC(=O)CCCCC(S)CCS"  
LA2  SMILES_CANONICAL  CACTVS                3.341  "N[C@@H](CCCCNC(=O)CCCC[C@@H](S)CCS)C(O)=O"  
LA2  SMILES            CACTVS                3.341  "N[CH](CCCCNC(=O)CCCC[CH](S)CCS)C(O)=O"  
LA2  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C(CCC(=O)NCCCC[C@@H](C(=O)O)N)C[C@H](CCS)S"  
LA2  SMILES            "OpenEye OEToolkits"  1.5.0  "C(CCC(=O)NCCCCC(C(=O)O)N)CC(CCS)S"  
LA2  InChI             InChI                 1.03   "InChI=1S/C14H28N2O3S2/c15-12(14(18)19)6-3-4-9-16-13(17)7-2-1-5-11(21)8-10-20/h11-12,20-21H,1-10,15H2,(H,16,17)(H,18,19)/t11-,12+/m1/s1"  
LA2  InChIKey          InChI                 1.03   AYZPHCCEYJWVJC-NEPJUHHUSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
LA2  "SYSTEMATIC NAME"  ACDLabs               10.04  "N~6~-[(6R)-6,8-disulfanyloctanoyl]-L-lysine"  
LA2  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(2S)-2-amino-6-[[(6R)-6,8-bis-sulfanyloctanoyl]amino]hexanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LA2  "Create component"   2008-04-16  RCSB  
LA2  "Modify descriptor"  2011-06-04  RCSB  
LA2  "Modify synonyms"    2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     LA2
_pdbx_chem_comp_synonyms.name        lipoyllysine
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
