data_LBV
#

_chem_comp.id                                   LBV
_chem_comp.name                                 
;3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium
-2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3-
yl]propanoic acid
;

_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C33 H37 N4 O6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "2(R),3(E)- PHYTOCHROMOBILIN"
_chem_comp.pdbx_formal_charge                   1
_chem_comp.pdbx_initial_date                    2006-12-22
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       585.670
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    LBV
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2O9B
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LBV  C1A   C1A   C  0  1  N  N  N  26.526  -30.390  16.343   3.362   0.819  -2.000  C1A   LBV   1  
LBV  C1B   C1B   C  0  1  Y  N  N  22.609  -28.774  17.577   0.250   2.503   0.284  C1B   LBV   2  
LBV  O1B   O1B   O  0  1  N  N  N  16.978  -25.147  17.049  -5.895   3.547   1.275  O1B   LBV   3  
LBV  C1C   C1C   C  0  1  N  N  N  20.769  -28.319  13.593  -1.752  -1.216  -0.228  C1C   LBV   4  
LBV  O1C   O1C   O  0  1  N  N  N  19.877  -24.264  11.275  -7.065  -3.036   0.953  O1C   LBV   5  
LBV  C1D   C1D   C  0  1  N  N  N  23.338  -29.581   9.893   2.051  -2.863   0.451  C1D   LBV   6  
LBV  C2A   C2A   C  0  1  N  N  S  27.044  -30.796  17.690   4.562   1.528  -1.414  C2A   LBV   7  
LBV  C2B   C2B   C  0  1  Y  N  N  21.545  -28.177  18.239  -0.866   3.225   0.720  C2B   LBV   8  
LBV  O2B   O2B   O  0  1  N  N  N  18.231  -23.999  18.516  -6.315   4.261  -0.773  O2B   LBV   9  
LBV  C2C   C2C   C  0  1  N  N  N  19.997  -28.092  12.442  -2.427  -2.398  -0.615  C2C   LBV  10  
LBV  O2C   O2C   O  0  1  N  N  N  18.289  -25.423  10.219  -6.517  -2.790  -1.173  O2C   LBV  11  
LBV  C2D   C2D   C  0  1  N  N  N  24.130  -30.546   9.271   3.365  -3.357   0.467  C2D   LBV  12  
LBV  C3A   C3A   C  0  1  N  N  N  25.870  -30.334  18.525   3.971   2.513  -0.423  C3A   LBV  13  
LBV  C3B   C3B   C  0  1  Y  N  N  20.610  -27.788  17.296  -1.959   2.411   0.634  C3B   LBV  14  
LBV  C3C   C3C   C  0  1  N  N  N  20.697  -28.646  11.393  -1.503  -3.396  -0.617  C3C   LBV  15  
LBV  C3D   C3D   C  0  1  N  N  N  24.506  -30.044   8.040   4.154  -2.419   1.114  C3D   LBV  16  
LBV  C4A   C4A   C  0  1  N  N  N  24.871  -29.786  17.718   2.518   2.303  -0.510  C4A   LBV  17  
LBV  C4B   C4B   C  0  1  Y  N  N  21.107  -28.167  16.050  -1.531   1.168   0.141  C4B   LBV  18  
LBV  C4C   C4C   C  0  1  N  N  N  21.879  -29.177  11.899  -0.272  -2.817  -0.231  C4C   LBV  19  
LBV  C4D   C4D   C  0  1  N  N  N  23.939  -28.791   7.963   3.269  -1.317   1.501  C4D   LBV  20  
LBV  CAA   CAA   C  0  1  N  N  N  25.843  -30.471  19.899   4.624   3.377   0.355  CAA   LBV  21  
LBV  CAB   CAB   C  0  1  N  N  N  19.281  -27.062  17.597  -3.372   2.780   1.003  CAB   LBV  22  
LBV  CAC   CAC   C  0  1  N  N  N  18.643  -27.402  12.282  -3.888  -2.525  -0.959  CAC   LBV  23  
LBV  CAD   CAD   C  0  1  N  N  N  25.311  -30.713   7.108   5.603  -2.513   1.365  CAD   LBV  24  
LBV  CBA   CBA   C  0  1  N  N  N  26.867  -31.025  20.662   6.121   3.513   0.238  CBA   LBV  25  
LBV  CBB   CBB   C  0  1  N  N  N  19.296  -25.605  17.124  -4.084   3.360  -0.220  CBB   LBV  26  
LBV  CBC   CBC   C  0  1  N  N  N  18.673  -25.889  12.512  -4.699  -2.725   0.323  CBC   LBV  27  
LBV  CBD   CBD   C  0  1  N  N  N  25.690  -30.217   5.862   6.211  -1.589   2.104  CBD   LBV  28  
LBV  CGB   CGB   C  0  1  N  N  N  18.063  -24.857  17.607  -5.498   3.730   0.149  CGB   LBV  29  
LBV  CGC   CGC   C  0  1  N  N  N  18.969  -25.125  11.224  -6.160  -2.853  -0.021  CGC   LBV  30  
LBV  CHB   CHB   C  0  1  N  N  N  23.692  -29.291  18.295   1.571   2.986   0.218  CHB   LBV  31  
LBV  CHC   CHC   C  0  1  N  N  N  20.373  -27.893  14.874  -2.333   0.061  -0.095  CHC   LBV  32  
LBV  CHD   CHD   C  0  1  N  N  N  22.840  -29.863  11.161   0.960  -3.502  -0.103  CHD   LBV  33  
LBV  CMA   CMA   C  0  1  N  N  N  28.292  -29.970  18.019   5.333   2.269  -2.508  CMA   LBV  34  
LBV  CMB   CMB   C  0  1  N  N  N  21.415  -27.953  19.750  -0.862   4.653   1.202  CMB   LBV  35  
LBV  CMC   CMC   C  0  1  N  N  N  20.221  -28.640   9.926  -1.746  -4.843  -0.964  CMC   LBV  36  
LBV  CMD   CMD   C  0  1  N  N  N  24.517  -31.927   9.828   3.832  -4.667  -0.113  CMD   LBV  37  
LBV  N_A   N_A   N  0  1  N  N  N  25.304  -29.843  16.444   2.252   1.316  -1.436  N_A   LBV  38  
LBV  O_A   O_A   O  0  1  N  N  N  27.158  -30.562  15.297   3.398  -0.051  -2.844  O_A   LBV  39  
LBV  N_B   N_B   N  0  1  Y  N  N  22.294  -28.754  16.271  -0.162   1.243  -0.064  N_B   LBV  40  
LBV  N_C   N_C   N  1  1  N  N  N  21.863  -28.969  13.210  -0.469  -1.518  -0.005  N_C   LBV  41  
LBV  N_D   N_D   N  0  1  N  N  N  23.242  -28.525   9.066   2.024  -1.628   1.090  N_D   LBV  42  
LBV  O_D   O_D   O  0  1  N  N  N  24.051  -28.034   7.016   3.598  -0.303   2.092  O_D   LBV  43  
LBV  HO1C  HO1C  H  0  1  N  N  N  19.979  -23.859  10.422  -7.991  -3.112   0.684  HO1C  LBV  44  
LBV  H2A   H2A   H  0  1  N  N  N  27.334  -31.850  17.815   5.213   0.818  -0.905  H2A   LBV  45  
LBV  HO2B  HO2B  H  0  1  N  N  N  17.399  -23.592  18.725  -7.213   4.482  -0.489  HO2B  LBV  46  
LBV  HAA1  HAA1  H  0  1  N  N  N  24.963  -30.123  20.420   4.081   3.979   1.068  HAA1  LBV  47  
LBV  HAB1  HAB1  H  0  1  N  N  N  18.468  -27.590  17.077  -3.903   1.891   1.344  HAB1  LBV  48  
LBV  HAB2  HAB2  H  0  1  N  N  N  19.113  -27.075  18.684  -3.357   3.522   1.801  HAB2  LBV  49  
LBV  HAC1  HAC1  H  0  1  N  N  N  18.293  -27.580  11.255  -4.224  -1.618  -1.463  HAC1  LBV  50  
LBV  HAC2  HAC2  H  0  1  N  N  N  17.952  -27.841  13.016  -4.034  -3.382  -1.618  HAC2  LBV  51  
LBV  HAD1  HAD1  H  0  1  N  N  N  25.668  -31.696   7.378   6.172  -3.332   0.950  HAD1  LBV  52  
LBV  HBA1  HBA1  H  0  1  N  N  N  26.583  -31.010  21.725   6.372   3.939  -0.733  HBA1  LBV  53  
LBV  HBA2  HBA2  H  0  1  N  N  N  27.040  -32.064  20.344   6.488   4.168   1.028  HBA2  LBV  54  
LBV  HBA3  HBA3  H  0  1  N  N  N  27.787  -30.440  20.520   6.584   2.531   0.336  HBA3  LBV  55  
LBV  HBB1  HBB1  H  0  1  N  N  N  20.193  -25.110  17.524  -3.554   4.249  -0.561  HBB1  LBV  56  
LBV  HBB2  HBB2  H  0  1  N  N  N  19.315  -25.588  16.024  -4.099   2.618  -1.018  HBB2  LBV  57  
LBV  HBC1  HBC1  H  0  1  N  N  N  17.691  -25.571  12.893  -4.363  -3.632   0.827  HBC1  LBV  58  
LBV  HBC2  HBC2  H  0  1  N  N  N  19.459  -25.660  13.247  -4.554  -1.869   0.982  HBC2  LBV  59  
LBV  HBD1  HBD1  H  0  1  N  N  N  26.315  -30.811   5.212   7.285  -1.605   2.213  HBD1  LBV  60  
LBV  HBD2  HBD2  H  0  1  N  N  N  25.358  -29.239   5.547   5.630  -0.822   2.595  HBD2  LBV  61  
LBV  HHB1  HHB1  H  0  1  N  N  N  23.615  -29.311  19.372   1.841   3.892   0.740  HHB1  LBV  62  
LBV  HHC1  HHC1  H  0  1  N  N  N  19.458  -27.326  14.963  -3.404   0.178  -0.175  HHC1  LBV  63  
LBV  HHD1  HHD1  H  0  1  N  N  N  23.257  -30.736  11.640   1.047  -4.525  -0.439  HHD1  LBV  64  
LBV  HMA1  HMA1  H  0  1  N  N  N  28.677  -30.264  19.007   4.672   2.985  -2.997  HMA1  LBV  65  
LBV  HMA2  HMA2  H  0  1  N  N  N  29.063  -30.152  17.256   6.176   2.797  -2.064  HMA2  LBV  66  
LBV  HMA3  HMA3  H  0  1  N  N  N  28.032  -28.901  18.030   5.699   1.552  -3.243  HMA3  LBV  67  
LBV  HMB1  HMB1  H  0  1  N  N  N  21.852  -26.979  20.016  -1.028   5.322   0.357  HMB1  LBV  68  
LBV  HMB2  HMB2  H  0  1  N  N  N  20.352  -27.967  20.033  -1.657   4.791   1.935  HMB2  LBV  69  
LBV  HMB3  HMB3  H  0  1  N  N  N  21.948  -28.752  20.286   0.100   4.880   1.661  HMB3  LBV  70  
LBV  HMC1  HMC1  H  0  1  N  N  N  20.967  -29.147   9.296  -1.590  -4.991  -2.032  HMC1  LBV  71  
LBV  HMC2  HMC2  H  0  1  N  N  N  19.258  -29.167   9.851  -1.053  -5.471  -0.405  HMC2  LBV  72  
LBV  HMC3  HMC3  H  0  1  N  N  N  20.098  -27.601   9.585  -2.770  -5.111  -0.705  HMC3  LBV  73  
LBV  HMD1  HMD1  H  0  1  N  N  N  25.150  -32.453   9.098   4.130  -4.519  -1.151  HMD1  LBV  74  
LBV  HMD2  HMD2  H  0  1  N  N  N  25.071  -31.800  10.770   4.683  -5.035   0.460  HMD2  LBV  75  
LBV  HMD3  HMD3  H  0  1  N  N  N  23.606  -32.515  10.014   3.021  -5.394  -0.067  HMD3  LBV  76  
LBV  HAD   HAD   H  0  1  N  N  N  24.775  -29.515  15.661   1.357   1.015  -1.656  HAD   LBV  77  
LBV  HAE   HAE   H  0  1  N  N  N  22.875  -29.131  15.550   0.403   0.531  -0.401  HAE   LBV  78  
LBV  HAF   HAF   H  0  1  N  N  N  22.586  -29.265  13.834   0.215  -0.889   0.273  HAF   LBV  79  
LBV  HAG   HAG   H  0  1  N  N  N  22.734  -27.683   9.248   1.237  -1.076   1.214  HAG   LBV  80  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LBV  C1A  N_A   SING  N  N   1  
LBV  C1A  C2A   SING  N  N   2  
LBV  C1B  C2B   DOUB  Y  N   3  
LBV  C1B  CHB   SING  N  N   4  
LBV  O1B  CGB   DOUB  N  N   5  
LBV  C1C  CHC   DOUB  N  Z   6  
LBV  C1D  CHD   DOUB  N  Z   7  
LBV  C2A  CMA   SING  N  N   8  
LBV  C2A  C3A   SING  N  N   9  
LBV  C2B  CMB   SING  N  N  10  
LBV  C2C  C1C   SING  N  N  11  
LBV  O2C  CGC   DOUB  N  N  12  
LBV  C2D  C1D   SING  N  N  13  
LBV  C2D  CMD   SING  N  N  14  
LBV  C3A  CAA   DOUB  N  E  15  
LBV  C3B  C2B   SING  Y  N  16  
LBV  C3B  CAB   SING  N  N  17  
LBV  C3C  C2C   DOUB  N  N  18  
LBV  C3C  C4C   SING  N  N  19  
LBV  C3D  C2D   DOUB  N  N  20  
LBV  C4A  C3A   SING  N  N  21  
LBV  C4A  CHB   DOUB  N  Z  22  
LBV  C4B  C3B   DOUB  Y  N  23  
LBV  C4B  N_B   SING  Y  N  24  
LBV  C4C  N_C   DOUB  N  N  25  
LBV  C4D  C3D   SING  N  N  26  
LBV  C4D  N_D   SING  N  N  27  
LBV  CAA  CBA   SING  N  N  28  
LBV  CAC  C2C   SING  N  N  29  
LBV  CAC  CBC   SING  N  N  30  
LBV  CAD  C3D   SING  N  N  31  
LBV  CBB  CAB   SING  N  N  32  
LBV  CBB  CGB   SING  N  N  33  
LBV  CBD  CAD   DOUB  N  N  34  
LBV  CGB  O2B   SING  N  N  35  
LBV  CGC  O1C   SING  N  N  36  
LBV  CGC  CBC   SING  N  N  37  
LBV  CHC  C4B   SING  N  N  38  
LBV  CHD  C4C   SING  N  N  39  
LBV  CMC  C3C   SING  N  N  40  
LBV  N_A  C4A   SING  N  N  41  
LBV  O_A  C1A   DOUB  N  N  42  
LBV  N_B  C1B   SING  Y  N  43  
LBV  N_C  C1C   SING  N  N  44  
LBV  N_D  C1D   SING  N  N  45  
LBV  O_D  C4D   DOUB  N  N  46  
LBV  O1C  HO1C  SING  N  N  47  
LBV  C2A  H2A   SING  N  N  48  
LBV  O2B  HO2B  SING  N  N  49  
LBV  CAA  HAA1  SING  N  N  50  
LBV  CAB  HAB1  SING  N  N  51  
LBV  CAB  HAB2  SING  N  N  52  
LBV  CAC  HAC1  SING  N  N  53  
LBV  CAC  HAC2  SING  N  N  54  
LBV  CAD  HAD1  SING  N  N  55  
LBV  CBA  HBA1  SING  N  N  56  
LBV  CBA  HBA2  SING  N  N  57  
LBV  CBA  HBA3  SING  N  N  58  
LBV  CBB  HBB1  SING  N  N  59  
LBV  CBB  HBB2  SING  N  N  60  
LBV  CBC  HBC1  SING  N  N  61  
LBV  CBC  HBC2  SING  N  N  62  
LBV  CBD  HBD1  SING  N  N  63  
LBV  CBD  HBD2  SING  N  N  64  
LBV  CHB  HHB1  SING  N  N  65  
LBV  CHC  HHC1  SING  N  N  66  
LBV  CHD  HHD1  SING  N  N  67  
LBV  CMA  HMA1  SING  N  N  68  
LBV  CMA  HMA2  SING  N  N  69  
LBV  CMA  HMA3  SING  N  N  70  
LBV  CMB  HMB1  SING  N  N  71  
LBV  CMB  HMB2  SING  N  N  72  
LBV  CMB  HMB3  SING  N  N  73  
LBV  CMC  HMC1  SING  N  N  74  
LBV  CMC  HMC2  SING  N  N  75  
LBV  CMC  HMC3  SING  N  N  76  
LBV  CMD  HMD1  SING  N  N  77  
LBV  CMD  HMD2  SING  N  N  78  
LBV  CMD  HMD3  SING  N  N  79  
LBV  N_A  HAD   SING  N  N  80  
LBV  N_B  HAE   SING  N  N  81  
LBV  N_C  HAF   SING  N  N  82  
LBV  N_D  HAG   SING  N  N  83  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LBV  InChI             InChI                 1.03   "InChI=1S/C33H36N4O6/c1-7-20-19(6)32(42)37-27(20)14-25-18(5)23(10-12-31(40)41)29(35-25)15-28-22(9-11-30(38)39)17(4)24(34-28)13-26-16(3)21(8-2)33(43)36-26/h7-8,13-15,19,35H,2,9-12H2,1,3-6H3,(H,36,43)(H,37,42)(H,38,39)(H,40,41)/p+1/b20-7+,26-13-,27-14-,28-15-/t19-/m0/s1"  
LBV  InChIKey          InChI                 1.03   DKMLMZVDTGOEGU-ISEYCTJISA-O  
LBV  SMILES_CANONICAL  CACTVS                3.370  "C/C=C/1[C@H](C)C(=O)NC/1=C/c2[nH]c(/C=C/3[NH+]=C(/C=C/4NC(=O)C(=C/4C)C=C)C(=C/3CCC(O)=O)C)c(CCC(O)=O)c2C"  
LBV  SMILES            CACTVS                3.370  "CC=C1[CH](C)C(=O)NC1=Cc2[nH]c(C=C3[NH+]=C(C=C4NC(=O)C(=C4C)C=C)C(=C3CCC(O)=O)C)c(CCC(O)=O)c2C"  
LBV  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.2  "C/C=C/1\C(C(=O)N\C1=C/c2c(c(c([nH]2)/C=C\3/C(=C(C(=[NH+]3)/C=C\4/C(=C(C(=O)N4)C=C)C)C)CCC(=O)O)CCC(=O)O)C)C"  
LBV  SMILES            "OpenEye OEToolkits"  1.7.2  "CC=C1C(C(=O)NC1=Cc2c(c(c([nH]2)C=C3C(=C(C(=[NH+]3)C=C4C(=C(C(=O)N4)C=C)C)C)CCC(=O)O)CCC(=O)O)C)C"  
#
_pdbx_chem_comp_identifier.comp_id          LBV
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  1.7.2
_pdbx_chem_comp_identifier.identifier       "3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium-2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LBV  "Create component"    2006-12-22  EBI   
LBV  "Modify descriptor"   2011-06-04  RCSB  
LBV  "Other modification"  2011-07-20  RCSB  
LBV  "Other modification"  2011-09-21  RCSB  
LBV  "Modify synonyms"     2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     LBV
_pdbx_chem_comp_synonyms.name        "2(R),3(E)- PHYTOCHROMOBILIN"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
