data_MJ8
# 
_chem_comp.id                                    MJ8 
_chem_comp.name                                  "5'-({[(2R)-3-amino-2-{[2-({N-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl]sulfanyl}propyl]sulfonyl}amino)-5'-deoxyadenosine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H42 N9 O12 P S2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-12-20 
_chem_comp.pdbx_modified_date                    2017-05-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        743.747 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     MJ8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5U89 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
MJ8 O43 O1  O 0 1 N N N -53.265 52.620 -3.463 2.936   0.523  1.045  O43 MJ8 1  
MJ8 S16 S1  S 0 1 N N N -53.110 51.506 -2.572 3.589   1.211  -0.013 S16 MJ8 2  
MJ8 O42 O2  O 0 1 N N N -52.407 51.932 -1.396 3.344   2.590  -0.252 O42 MJ8 3  
MJ8 N15 N1  N 0 1 N N N -54.562 50.949 -2.159 5.195   1.145  0.387  N15 MJ8 4  
MJ8 C14 C1  C 0 1 N N N -55.295 52.002 -1.442 6.192   1.783  -0.476 C14 MJ8 5  
MJ8 C13 C2  C 0 1 N N R -56.477 52.468 -2.284 7.516   1.908  0.280  C13 MJ8 6  
MJ8 O12 O3  O 0 1 N N N -56.157 52.495 -3.678 8.110   0.606  0.473  O12 MJ8 7  
MJ8 C44 C3  C 0 1 N N S -57.676 51.545 -2.176 8.546   2.690  -0.566 C44 MJ8 8  
MJ8 O45 O4  O 0 1 N N N -58.479 51.892 -1.045 8.598   4.057  -0.153 O45 MJ8 9  
MJ8 C46 C4  C 0 1 N N R -58.414 51.794 -3.475 9.888   1.984  -0.269 C46 MJ8 10 
MJ8 O47 O5  O 0 1 N N N -59.382 52.834 -3.307 10.810  2.893  0.335  O47 MJ8 11 
MJ8 C11 C5  C 0 1 N N R -57.339 52.249 -4.449 9.510   0.859  0.720  C11 MJ8 12 
MJ8 N10 N2  N 0 1 Y N N -57.083 51.154 -5.414 10.301  -0.344 0.450  N10 MJ8 13 
MJ8 C06 C6  C 0 1 Y N N -57.778 50.928 -6.533 11.531  -0.642 0.979  C06 MJ8 14 
MJ8 N05 N3  N 0 1 Y N N -58.829 51.560 -7.109 12.364  -0.036 1.819  N05 MJ8 15 
MJ8 C04 C7  C 0 1 Y N N -59.338 51.108 -8.263 13.511  -0.593 2.146  C04 MJ8 16 
MJ8 N03 N4  N 0 1 Y N N -58.825 50.031 -8.877 13.893  -1.763 1.668  N03 MJ8 17 
MJ8 C09 C8  C 0 1 Y N N -56.132 50.215 -5.309 9.947   -1.376 -0.367 C09 MJ8 18 
MJ8 N08 N5  N 0 1 Y N N -56.213 49.387 -6.375 10.884  -2.279 -0.375 N08 MJ8 19 
MJ8 C07 C9  C 0 1 Y N N -57.232 49.815 -7.146 11.892  -1.890 0.443  C07 MJ8 20 
MJ8 C02 C10 C 0 1 Y N N -57.776 49.368 -8.342 13.126  -2.444 0.822  C02 MJ8 21 
MJ8 N01 N6  N 0 1 N N N -57.263 48.280 -8.965 13.535  -3.670 0.326  N01 MJ8 22 
MJ8 C17 C11 C 0 1 N N N -52.279 50.281 -3.329 3.469   0.266  -1.556 C17 MJ8 23 
MJ8 C18 C12 C 0 1 N N R -51.404 49.553 -2.313 2.015   0.252  -2.034 C18 MJ8 24 
MJ8 C19 C13 C 0 1 N N N -51.242 48.087 -2.704 1.913   -0.545 -3.336 C19 MJ8 25 
MJ8 N20 N7  N 0 1 N N N -50.779 47.322 -1.534 0.518   -0.557 -3.795 N20 MJ8 26 
MJ8 S21 S2  S 0 1 N N N -49.816 50.327 -2.238 0.970   -0.520 -0.769 S21 MJ8 27 
MJ8 C22 C14 C 0 1 N N N -49.182 50.602 -3.862 -0.703  -0.307 -1.436 C22 MJ8 28 
MJ8 C23 C15 C 0 1 N N N -49.426 52.048 -4.279 -1.720  -0.917 -0.469 C23 MJ8 29 
MJ8 N24 N8  N 0 1 N N N -48.444 52.525 -5.232 -3.071  -0.745 -1.008 N24 MJ8 30 
MJ8 C25 C16 C 0 1 N N N -47.583 53.476 -4.888 -4.135  -1.208 -0.321 C25 MJ8 31 
MJ8 O41 O6  O 0 1 N N N -47.407 53.820 -3.730 -3.973  -1.766 0.743  O41 MJ8 32 
MJ8 C26 C17 C 0 1 N N N -46.811 54.129 -6.008 -5.525  -1.031 -0.876 C26 MJ8 33 
MJ8 C27 C18 C 0 1 N N N -45.835 55.132 -5.411 -6.541  -1.640 0.092  C27 MJ8 34 
MJ8 N28 N9  N 0 1 N N N -46.090 56.493 -5.839 -7.892  -1.468 -0.447 N28 MJ8 35 
MJ8 C29 C19 C 0 1 N N N -45.157 57.417 -5.649 -8.956  -1.931 0.239  C29 MJ8 36 
MJ8 O40 O7  O 0 1 N N N -43.996 57.222 -5.972 -8.789  -2.571 1.256  O40 MJ8 37 
MJ8 C30 C20 C 0 1 N N R -45.617 58.688 -4.983 -10.352 -1.653 -0.256 C30 MJ8 38 
MJ8 O31 O8  O 0 1 N N N -47.035 58.625 -4.779 -10.290 -1.134 -1.586 O31 MJ8 39 
MJ8 C32 C21 C 0 1 N N N -45.304 59.944 -5.788 -11.024 -0.629 0.660  C32 MJ8 40 
MJ8 C33 C22 C 0 1 N N N -45.803 59.787 -7.219 -11.224 -1.241 2.049  C33 MJ8 41 
MJ8 C34 C23 C 0 1 N N N -43.802 60.206 -5.803 -10.138 0.613  0.773  C34 MJ8 42 
MJ8 C35 C24 C 0 1 N N N -46.022 61.106 -5.097 -12.382 -0.236 0.076  C35 MJ8 43 
MJ8 O36 O9  O 0 1 N N N -45.118 61.793 -4.227 -13.010 0.720  0.932  O36 MJ8 44 
MJ8 P37 P1  P 0 1 N N N -44.416 63.226 -4.525 -14.457 1.356  0.624  P37 MJ8 45 
MJ8 O39 O10 O 0 1 N N N -45.331 64.363 -4.090 -14.451 1.965  -0.724 O39 MJ8 46 
MJ8 O38 O11 O 0 1 N N N -43.157 63.252 -3.708 -15.575 0.199  0.686  O38 MJ8 47 
MJ8 O1  O12 O 0 1 N Y N -43.974 63.395 -6.079 -14.792 2.485  1.722  O1  MJ8 48 
MJ8 H1  H1  H 0 1 N N N -55.068 50.690 -2.982 5.475   0.684  1.194  H1  MJ8 49 
MJ8 H2  H2  H 0 1 N N N -54.623 52.852 -1.253 6.339   1.176  -1.370 H2  MJ8 50 
MJ8 H3  H3  H 0 1 N N N -55.662 51.605 -0.484 5.842   2.774  -0.764 H3  MJ8 51 
MJ8 H4  H4  H 0 1 N N N -56.773 53.473 -1.948 7.359   2.402  1.239  H4  MJ8 52 
MJ8 H5  H5  H 0 1 N N N -57.343 50.498 -2.125 8.301   2.621  -1.626 H5  MJ8 53 
MJ8 H6  H6  H 0 1 N N N -57.991 51.726 -0.247 9.229   4.594  -0.651 H6  MJ8 54 
MJ8 H7  H7  H 0 1 N N N -58.880 50.864 -3.832 10.309  1.566  -1.184 H7  MJ8 55 
MJ8 H8  H8  H 0 1 N N N -60.053 52.548 -2.698 11.035  3.652  -0.221 H8  MJ8 56 
MJ8 H9  H9  H 0 1 N N N -57.668 53.157 -4.975 9.661   1.191  1.747  H9  MJ8 57 
MJ8 H10 H10 H 0 1 N N N -60.178 51.621 -8.708 14.164  -0.073 2.831  H10 MJ8 58 
MJ8 H11 H11 H 0 1 N N N -55.417 50.133 -4.504 9.025   -1.435 -0.926 H11 MJ8 59 
MJ8 H12 H12 H 0 1 N N N -57.776 48.104 -9.805 14.389  -4.042 0.596  H12 MJ8 60 
MJ8 H13 H13 H 0 1 N N N -56.303 48.446 -9.189 12.966  -4.157 -0.291 H13 MJ8 61 
MJ8 H14 H14 H 0 1 N N N -52.994 49.572 -3.771 4.097   0.730  -2.317 H14 MJ8 62 
MJ8 H15 H15 H 0 1 N N N -51.645 50.704 -4.122 3.803   -0.757 -1.383 H15 MJ8 63 
MJ8 H16 H16 H 0 1 N N N -51.850 49.628 -1.310 1.680   1.275  -2.207 H16 MJ8 64 
MJ8 H17 H17 H 0 1 N N N -52.209 47.688 -3.045 2.542   -0.080 -4.096 H17 MJ8 65 
MJ8 H18 H18 H 0 1 N N N -50.504 48.002 -3.515 2.248   -1.567 -3.163 H18 MJ8 66 
MJ8 H19 H19 H 0 1 N N N -50.671 46.360 -1.785 0.164   0.382  -3.901 H19 MJ8 67 
MJ8 H20 H20 H 0 1 N N N -49.901 47.686 -1.224 0.424   -1.078 -4.654 H20 MJ8 68 
MJ8 H22 H22 H 0 1 N N N -49.688 49.929 -4.569 -0.912  0.755  -1.561 H22 MJ8 69 
MJ8 H23 H23 H 0 1 N N N -48.101 50.398 -3.871 -0.776  -0.807 -2.402 H23 MJ8 70 
MJ8 H24 H24 H 0 1 N N N -49.386 52.685 -3.383 -1.511  -1.979 -0.345 H24 MJ8 71 
MJ8 H25 H25 H 0 1 N N N -50.424 52.120 -4.736 -1.648  -0.417 0.497  H25 MJ8 72 
MJ8 H26 H26 H 0 1 N N N -48.414 52.136 -6.153 -3.201  -0.298 -1.859 H26 MJ8 73 
MJ8 H27 H27 H 0 1 N N N -47.507 54.648 -6.684 -5.734  0.032  -1.000 H27 MJ8 74 
MJ8 H28 H28 H 0 1 N N N -46.256 53.363 -6.570 -5.597  -1.531 -1.842 H28 MJ8 75 
MJ8 H29 H29 H 0 1 N N N -45.914 55.089 -4.315 -6.332  -2.703 0.216  H29 MJ8 76 
MJ8 H30 H30 H 0 1 N N N -44.816 54.854 -5.716 -6.469  -1.140 1.058  H30 MJ8 77 
MJ8 H31 H31 H 0 1 N N N -46.959 56.733 -6.272 -8.022  -1.021 -1.298 H31 MJ8 78 
MJ8 H32 H32 H 0 1 N N N -45.112 58.771 -4.009 -10.929 -2.578 -0.253 H32 MJ8 79 
MJ8 H33 H33 H 0 1 N N N -47.249 57.847 -4.278 -9.791  -0.310 -1.664 H33 MJ8 80 
MJ8 H34 H34 H 0 1 N N N -46.887 59.598 -7.211 -11.789 -2.169 1.959  H34 MJ8 81 
MJ8 H35 H35 H 0 1 N N N -45.596 60.709 -7.783 -10.252 -1.450 2.497  H35 MJ8 82 
MJ8 H36 H36 H 0 1 N N N -45.287 58.941 -7.697 -11.772 -0.541 2.679  H36 MJ8 83 
MJ8 H37 H37 H 0 1 N N N -43.439 60.320 -4.771 -10.617 1.343  1.426  H37 MJ8 84 
MJ8 H38 H38 H 0 1 N N N -43.287 59.360 -6.282 -9.171  0.333  1.190  H38 MJ8 85 
MJ8 H39 H39 H 0 1 N N N -43.596 61.127 -6.368 -9.996  1.049  -0.215 H39 MJ8 86 
MJ8 H40 H40 H 0 1 N N N -46.398 61.806 -5.858 -12.240 0.200  -0.913 H40 MJ8 87 
MJ8 H41 H41 H 0 1 N N N -46.866 60.715 -4.510 -13.013 -1.121 -0.004 H41 MJ8 88 
MJ8 H42 H42 H 0 1 N N N -43.195 63.973 -3.090 -15.635 -0.245 1.543  H42 MJ8 89 
MJ8 H43 H43 H 0 1 N N N -44.370 64.180 -6.438 -15.651 2.912  1.598  H43 MJ8 90 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
MJ8 N01 C02 SING N N 1  
MJ8 N03 C02 DOUB Y N 2  
MJ8 N03 C04 SING Y N 3  
MJ8 C02 C07 SING Y N 4  
MJ8 C04 N05 DOUB Y N 5  
MJ8 C33 C32 SING N N 6  
MJ8 C07 C06 DOUB Y N 7  
MJ8 C07 N08 SING Y N 8  
MJ8 N05 C06 SING Y N 9  
MJ8 C06 N10 SING Y N 10 
MJ8 N08 C09 DOUB Y N 11 
MJ8 C26 C27 SING N N 12 
MJ8 C26 C25 SING N N 13 
MJ8 O40 C29 DOUB N N 14 
MJ8 N28 C29 SING N N 15 
MJ8 N28 C27 SING N N 16 
MJ8 C34 C32 SING N N 17 
MJ8 C32 C35 SING N N 18 
MJ8 C32 C30 SING N N 19 
MJ8 C29 C30 SING N N 20 
MJ8 N10 C09 SING Y N 21 
MJ8 N10 C11 SING N N 22 
MJ8 N24 C25 SING N N 23 
MJ8 N24 C23 SING N N 24 
MJ8 C35 O36 SING N N 25 
MJ8 C30 O31 SING N N 26 
MJ8 C25 O41 DOUB N N 27 
MJ8 P37 O36 SING N N 28 
MJ8 P37 O39 DOUB N N 29 
MJ8 P37 O38 SING N N 30 
MJ8 C11 O12 SING N N 31 
MJ8 C11 C46 SING N N 32 
MJ8 C23 C22 SING N N 33 
MJ8 C22 S21 SING N N 34 
MJ8 O12 C13 SING N N 35 
MJ8 C46 O47 SING N N 36 
MJ8 C46 C44 SING N N 37 
MJ8 O43 S16 DOUB N N 38 
MJ8 C17 S16 SING N N 39 
MJ8 C17 C18 SING N N 40 
MJ8 C19 C18 SING N N 41 
MJ8 C19 N20 SING N N 42 
MJ8 S16 N15 SING N N 43 
MJ8 S16 O42 DOUB N N 44 
MJ8 C18 S21 SING N N 45 
MJ8 C13 C44 SING N N 46 
MJ8 C13 C14 SING N N 47 
MJ8 C44 O45 SING N N 48 
MJ8 N15 C14 SING N N 49 
MJ8 P37 O1  SING N N 50 
MJ8 N15 H1  SING N N 51 
MJ8 C14 H2  SING N N 52 
MJ8 C14 H3  SING N N 53 
MJ8 C13 H4  SING N N 54 
MJ8 C44 H5  SING N N 55 
MJ8 O45 H6  SING N N 56 
MJ8 C46 H7  SING N N 57 
MJ8 O47 H8  SING N N 58 
MJ8 C11 H9  SING N N 59 
MJ8 C04 H10 SING N N 60 
MJ8 C09 H11 SING N N 61 
MJ8 N01 H12 SING N N 62 
MJ8 N01 H13 SING N N 63 
MJ8 C17 H14 SING N N 64 
MJ8 C17 H15 SING N N 65 
MJ8 C18 H16 SING N N 66 
MJ8 C19 H17 SING N N 67 
MJ8 C19 H18 SING N N 68 
MJ8 N20 H19 SING N N 69 
MJ8 N20 H20 SING N N 70 
MJ8 C22 H22 SING N N 71 
MJ8 C22 H23 SING N N 72 
MJ8 C23 H24 SING N N 73 
MJ8 C23 H25 SING N N 74 
MJ8 N24 H26 SING N N 75 
MJ8 C26 H27 SING N N 76 
MJ8 C26 H28 SING N N 77 
MJ8 C27 H29 SING N N 78 
MJ8 C27 H30 SING N N 79 
MJ8 N28 H31 SING N N 80 
MJ8 C30 H32 SING N N 81 
MJ8 O31 H33 SING N N 82 
MJ8 C33 H34 SING N N 83 
MJ8 C33 H35 SING N N 84 
MJ8 C33 H36 SING N N 85 
MJ8 C34 H37 SING N N 86 
MJ8 C34 H38 SING N N 87 
MJ8 C34 H39 SING N N 88 
MJ8 C35 H40 SING N N 89 
MJ8 C35 H41 SING N N 90 
MJ8 O38 H42 SING N N 91 
MJ8 O1  H43 SING N N 92 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
MJ8 SMILES           ACDLabs              12.01 "O=S(NCC1C(O)C(O)C(O1)n2cnc3c2ncnc3N)(=O)CC(SCCNC(=O)CCNC(C(O)C(COP(=O)(O)O)(C)C)=O)CN" 
MJ8 InChI            InChI                1.03  
;InChI=1S/C24H42N9O12PS2/c1-24(2,10-44-46(39,40)41)19(37)22(38)28-4-3-15(34)27-5-6-47-13(7-25)9-48(42,43)32-8-14-17(35)18(36)23(45-14)33-12-31-16-20(26)29-11-30-21(16)33/h11-14,17-19,23,32,35-37H,3-10,25H2,1-2H3,(H,27,34)(H,28,38)(H2,26,29,30)(H2,39,40,41)/t13-,14-,17-,18-,19+,23-/m1/s1
;
MJ8 InChIKey         InChI                1.03  AKPDLNPLPXRYTO-XGVFZYDCSA-N 
MJ8 SMILES_CANONICAL CACTVS               3.385 "CC(C)(CO[P](O)(O)=O)[C@@H](O)C(=O)NCCC(=O)NCCS[C@H](CN)C[S](=O)(=O)NC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23" 
MJ8 SMILES           CACTVS               3.385 "CC(C)(CO[P](O)(O)=O)[CH](O)C(=O)NCCC(=O)NCCS[CH](CN)C[S](=O)(=O)NC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23" 
MJ8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC(C)(COP(=O)(O)O)[C@H](C(=O)NCCC(=O)NCCS[C@H](CN)CS(=O)(=O)NC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O)O" 
MJ8 SMILES           "OpenEye OEToolkits" 2.0.6 "CC(C)(COP(=O)(O)O)C(C(=O)NCCC(=O)NCCSC(CN)CS(=O)(=O)NCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
MJ8 "SYSTEMATIC NAME" ACDLabs              12.01 "5'-({[(2R)-3-amino-2-{[2-({N-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl]sulfanyl}propyl]sulfonyl}amino)-5'-deoxyadenosine" 
MJ8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 
;[(3~{R})-4-[[3-[2-[(2~{R})-1-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfamoyl]-3-azanyl-propan-2-yl]sulfanylethylamino]-3-oxidanylidene-propyl]amino]-2,2-dimethyl-3-oxidanyl-4-oxidanylidene-butyl] dihydrogen phosphate
;
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
MJ8 "Create component" 2016-12-20 RCSB 
MJ8 "Initial release"  2017-05-10 RCSB 
# 
