data_NDG
#

_chem_comp.id                                   NDG
_chem_comp.name                                 2-acetamido-2-deoxy-alpha-D-glucopyranose
_chem_comp.type                                 "D-saccharide, alpha linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C8 H15 N O6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;N-acetyl-alpha-D-glucosamine; 2-acetamido-2-deoxy-alpha-D-glucose; 2-acetamido-2-deoxy-D-glucose;
2-acetamido-2-deoxy-glucose; 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2002-07-02
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       221.208
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    NDG
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1H15
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  NDG  N-acetyl-alpha-D-glucosamine                 PDB  ?  
2  NDG  2-acetamido-2-deoxy-alpha-D-glucose          PDB  ?  
3  NDG  2-acetamido-2-deoxy-D-glucose                PDB  ?  
4  NDG  2-acetamido-2-deoxy-glucose                  PDB  ?  
5  NDG  "2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE"  PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
NDG  C1   C1    C  0  1  N  N  S  72.354  19.046  10.329  -0.207   1.202   0.140  C1   NDG   1  
NDG  C2   C2    C  0  1  N  N  R  72.696  20.147  11.366  -0.859  -0.132  -0.234  C2   NDG   2  
NDG  C3   C3    C  0  1  N  N  R  72.987  19.557  12.755   0.010  -1.280   0.290  C3   NDG   3  
NDG  C4   C4    C  0  1  N  N  S  72.260  18.220  12.969   1.422  -1.141  -0.287  C4   NDG   4  
NDG  C5   C5    C  0  1  N  N  R  70.961  18.152  12.153   1.986   0.231   0.088  C5   NDG   5  
NDG  C6   C6    C  0  1  N  N  N  69.953  19.240  12.490   3.372   0.401  -0.535  C6   NDG   6  
NDG  C7   C7    C  0  1  N  N  N  74.312  21.932  11.648  -3.250   0.333  -0.261  C7   NDG   7  
NDG  C8   C8    C  0  1  N  N  N  75.538  21.656  12.509  -4.621   0.252   0.360  C8   NDG   8  
NDG  O5   O     O  0  1  N  N  N  71.223  18.223  10.721   1.115   1.253  -0.402  O5   NDG   9  
NDG  O3   O3    O  0  1  N  N  N  72.578  20.483  13.754  -0.553  -2.529  -0.117  O3   NDG  10  
NDG  O4   O4    O  0  1  N  N  N  73.111  17.141  12.603   2.260  -2.165   0.252  O4   NDG  11  
NDG  O6   O6    O  0  1  N  N  N  68.632  18.836  12.161   3.947   1.632  -0.090  O6   NDG  12  
NDG  O7   O7    O  0  1  N  N  N  73.803  23.055  11.651  -3.100   0.890  -1.328  O7   NDG  13  
NDG  N2   N2    N  0  1  N  N  N  73.839  20.926  10.913  -2.191  -0.212   0.370  N2   NDG  14  
NDG  O1   O1L   O  0  1  N  Y  N  73.449  18.223  10.087  -0.144   1.320   1.562  O1   NDG  15  
NDG  H1   H1    H  0  1  N  N  N  72.079  19.585   9.410  -0.799   2.022  -0.268  H1   NDG  16  
NDG  H2   H2    H  0  1  N  N  N  71.815  20.800  11.455  -0.944  -0.205  -1.318  H2   NDG  17  
NDG  H3   H3    H  0  1  N  N  N  74.069  19.369  12.826   0.054  -1.236   1.378  H3   NDG  18  
NDG  H4   H4    H  0  1  N  N  N  72.001  18.143  14.035   1.383  -1.235  -1.372  H4   NDG  19  
NDG  H5   H5    H  0  1  N  N  N  70.525  17.181  12.429   2.062   0.309   1.173  H5   NDG  20  
NDG  H61  H6C1  H  0  1  N  N  N  70.003  19.450  13.569   4.011  -0.428  -0.231  H61  NDG  21  
NDG  H62  H6C2  H  0  1  N  N  N  70.200  20.138  11.904   3.284   0.413  -1.621  H62  NDG  22  
NDG  H81  H8C1  H  0  1  N  N  N  76.429  21.589  11.868  -5.119  -0.657   0.022  H81  NDG  23  
NDG  H82  H8C2  H  0  1  N  N  N  75.668  22.473  13.234  -4.528   0.233   1.446  H82  NDG  24  
NDG  H83  H8C3  H  0  1  N  N  N  75.402  20.706  13.047  -5.208   1.120   0.061  H83  NDG  25  
NDG  HO3  HB    H  0  1  N  Y  N  72.487  20.033  14.586  -0.052  -3.301   0.181  HO3  NDG  26  
NDG  HO4  HC    H  0  1  N  Y  N  73.301  17.188  11.673   3.172  -2.138  -0.071  HO4  NDG  27  
NDG  HO6  H6    H  0  1  N  Y  N  68.121  18.746  12.956   4.829   1.806  -0.447  HO6  NDG  28  
NDG  HN2  HA    H  0  1  N  N  N  74.274  20.704  10.041  -2.312  -0.657   1.223  HN2  NDG  29  
NDG  HO1  H1L   H  0  1  N  Y  N  73.505  18.035   9.157   0.258   2.143   1.871  HO1  NDG  30  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
NDG  C1  C2   SING  N  N   1  
NDG  C1  O5   SING  N  N   2  
NDG  C1  O1   SING  N  N   3  
NDG  C1  H1   SING  N  N   4  
NDG  C2  C3   SING  N  N   5  
NDG  C2  N2   SING  N  N   6  
NDG  C2  H2   SING  N  N   7  
NDG  C3  C4   SING  N  N   8  
NDG  C3  O3   SING  N  N   9  
NDG  C3  H3   SING  N  N  10  
NDG  C4  C5   SING  N  N  11  
NDG  C4  O4   SING  N  N  12  
NDG  C4  H4   SING  N  N  13  
NDG  C5  C6   SING  N  N  14  
NDG  C5  O5   SING  N  N  15  
NDG  C5  H5   SING  N  N  16  
NDG  C6  O6   SING  N  N  17  
NDG  C6  H61  SING  N  N  18  
NDG  C6  H62  SING  N  N  19  
NDG  C7  C8   SING  N  N  20  
NDG  C7  O7   DOUB  N  N  21  
NDG  C7  N2   SING  N  N  22  
NDG  C8  H81  SING  N  N  23  
NDG  C8  H82  SING  N  N  24  
NDG  C8  H83  SING  N  N  25  
NDG  O3  HO3  SING  N  N  26  
NDG  O4  HO4  SING  N  N  27  
NDG  O6  HO6  SING  N  N  28  
NDG  N2  HN2  SING  N  N  29  
NDG  O1  HO1  SING  N  N  30  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
NDG  SMILES            ACDLabs               10.04  "O=C(NC1C(O)C(O)C(OC1O)CO)C"  
NDG  SMILES_CANONICAL  CACTVS                3.341  "CC(=O)N[C@H]1[C@@H](O)O[C@H](CO)[C@@H](O)[C@@H]1O"  
NDG  SMILES            CACTVS                3.341  "CC(=O)N[CH]1[CH](O)O[CH](CO)[CH](O)[CH]1O"  
NDG  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@@H]1O)CO)O)O"  
NDG  SMILES            "OpenEye OEToolkits"  1.5.0  "CC(=O)NC1C(C(C(OC1O)CO)O)O"  
NDG  InChI             InChI                 1.03   "InChI=1S/C8H15NO6/c1-3(11)9-5-7(13)6(12)4(2-10)15-8(5)14/h4-8,10,12-14H,2H2,1H3,(H,9,11)/t4-,5-,6-,7-,8+/m1/s1"  
NDG  InChIKey          InChI                 1.03   OVRNDRQMDRJTHS-PVFLNQBWSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
NDG  "SYSTEMATIC NAME"                      ACDLabs               10.04  "2-(acetylamino)-2-deoxy-alpha-D-glucopyranose"  
NDG  "SYSTEMATIC NAME"                      "OpenEye OEToolkits"  1.5.0  "N-[(2S,3R,4R,5S,6R)-2,4,5-trihydroxy-6-(hydroxymethyl)oxan-3-yl]ethanamide"  
NDG  "CONDENSED IUPAC CARBOHYDRATE SYMBOL"  GMML                  1.0    DGlcpNAca  
NDG  "COMMON NAME"                          GMML                  1.0    N-acetyl-a-D-glucopyranosamine  
NDG  "IUPAC CARBOHYDRATE SYMBOL"            PDB-CARE              1.0    a-D-GlcpNAc  
NDG  "SNFG CARBOHYDRATE SYMBOL"             GMML                  1.0    GlcNAc  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
NDG  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
NDG  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
NDG  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
NDG  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
NDG  "Create component"          2002-07-02  EBI   
NDG  "Modify descriptor"         2011-06-04  RCSB  
NDG  "Other modification"        2019-08-12  RCSB  
NDG  "Other modification"        2019-12-19  RCSB  
NDG  "Other modification"        2020-07-03  RCSB  
NDG  "Modify name"               2020-07-17  RCSB  
NDG  "Modify synonyms"           2020-07-17  RCSB  
NDG  "Modify atom id"            2020-07-17  RCSB  
NDG  "Modify component atom id"  2020-07-17  RCSB  
##
