data_NDP
#

_chem_comp.id                                   NDP
_chem_comp.name                                 "NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C21 H30 N7 O17 P3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-07-08
_chem_comp.pdbx_modified_date                   2011-06-04
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       745.421
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    NDP
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1DGF
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
NDP  PA    AP    P  0  1  N  N  S  14.861  11.692  80.503  -1.275   0.043   -0.038  PA    NDP   1  
NDP  O1A   AO1   O  0  1  N  N  N  14.841  12.028  81.946  -1.710  -1.293   -0.500  O1A   NDP   2  
NDP  O2A   AO2   O  0  1  N  N  N  15.549  10.473  80.008  -2.565   0.915    0.371  O2A   NDP   3  
NDP  O5B   AO5*  O  0  1  N  N  N  15.390  12.960  79.658  -0.479   0.787   -1.223  O5B   NDP   4  
NDP  C5B   AC5*  C  0  1  N  N  N  15.048  14.291  80.053  -1.385   0.901   -2.322  C5B   NDP   5  
NDP  C4B   AC4*  C  0  1  N  N  R  15.898  15.228  79.208  -0.687   1.603   -3.489  C4B   NDP   6  
NDP  O4B   AO4*  O  0  1  N  N  N  15.467  16.583  79.405   0.439   0.824   -3.924  O4B   NDP   7  
NDP  C3B   AC3*  C  0  1  N  N  R  17.372  15.169  79.595  -1.654   1.723   -4.682  C3B   NDP   8  
NDP  O3B   AO3*  O  0  1  N  N  N  18.120  14.349  78.693  -1.863   3.094   -5.029  O3B   NDP   9  
NDP  C2B   AC2*  C  0  1  N  N  R  17.842  16.619  79.536  -0.927   0.977   -5.832  C2B   NDP  10  
NDP  O2B   AO2*  O  0  1  N  N  N  18.974  16.882  78.682  -1.073   1.680   -7.068  O2B   NDP  11  
NDP  C1B   AC1*  C  0  1  N  N  R  16.607  17.414  79.124   0.546   1.001   -5.353  C1B   NDP  12  
NDP  N9A   AN9   N  0  1  Y  N  N  16.449  18.688  79.870   1.304  -0.099   -5.954  N9A   NDP  13  
NDP  C8A   AC8   C  0  1  Y  N  N  16.645  18.917  81.183   1.388  -1.374   -5.479  C8A   NDP  14  
NDP  N7A   AN7   N  0  1  Y  N  N  16.316  20.173  81.516   2.145  -2.090   -6.259  N7A   NDP  15  
NDP  C5A   AC5   C  0  1  Y  N  N  15.904  20.700  80.370   2.594  -1.322   -7.280  C5A   NDP  16  
NDP  C6A   AC6   C  0  1  Y  N  N  15.427  22.002  80.198   3.422  -1.544   -8.394  C6A   NDP  17  
NDP  N6A   AN6   N  0  1  N  N  N  15.438  22.917  81.172   3.976  -2.791   -8.627  N6A   NDP  18  
NDP  N1A   AN1   N  0  1  Y  N  N  15.048  22.316  78.931   3.659  -0.530   -9.219  N1A   NDP  19  
NDP  C2A   AC2   C  0  1  Y  N  N  15.134  21.440  77.919   3.134   0.662   -9.005  C2A   NDP  20  
NDP  N3A   AN3   N  0  1  Y  N  N  15.591  20.197  78.097   2.354   0.916   -7.976  N3A   NDP  21  
NDP  C4A   AC4   C  0  1  Y  N  N  15.981  19.802  79.324   2.056  -0.037   -7.100  C4A   NDP  22  
NDP  O3    O3    O  0  1  N  N  N  13.327  11.628  80.057  -0.309  -0.118    1.238  O3    NDP  23  
NDP  PN    NP    P  0  1  N  N  S  12.528  11.132  78.764  -1.165  -0.865    2.378  PN    NDP  24  
NDP  O1N   NO1   O  0  1  N  N  N  13.486  10.811  77.681  -2.352  -0.049    2.718  O1N   NDP  25  
NDP  O2N   NO2   O  0  1  N  N  N  11.586  10.083  79.201  -1.640  -2.304    1.835  O2N   NDP  26  
NDP  O5D   NO5*  O  0  1  N  N  N  11.722  12.466  78.364  -0.255  -1.061    3.692  O5D   NDP  27  
NDP  C5D   NC5*  C  0  1  N  N  N  10.803  13.113  79.263  -1.066  -1.726    4.661  C5D   NDP  28  
NDP  C4D   NC4*  C  0  1  N  N  R  10.675  14.572  78.840  -0.257  -1.944    5.941  C4D   NDP  29  
NDP  O4D   NO4*  O  0  1  N  N  N  11.988  15.188  78.828   0.150  -0.676    6.500  O4D   NDP  30  
NDP  C3D   NC3*  C  0  1  N  N  S  10.133  14.710  77.427  -1.136  -2.592    7.033  C3D   NDP  31  
NDP  O3D   NO3*  O  0  1  N  N  N   8.701  14.684  77.373  -0.916  -4.003    7.081  O3D   NDP  32  
NDP  C2D   NC2*  C  0  1  N  N  R  10.734  16.055  77.007  -0.661  -1.924    8.345  C2D   NDP  33  
NDP  O2D   NO2*  O  0  1  N  N  N   9.893  17.147  77.361  -0.136  -2.903    9.244  O2D   NDP  34  
NDP  C1D   NC1*  C  0  1  N  N  R  12.058  16.172  77.760   0.446  -0.949    7.887  C1D   NDP  35  
NDP  N1N   NN1   N  0  1  N  N  N  13.254  15.953  76.900   0.394   0.286    8.672  N1N   NDP  36  
NDP  C2N   NC2   C  0  1  N  N  N  13.460  14.684  76.332   1.485   0.682    9.394  C2N   NDP  37  
NDP  C3N   NC3   C  0  1  N  N  N  14.497  14.477  75.434   1.592   1.952    9.826  C3N   NDP  38  
NDP  C7N   NC7   C  0  1  N  N  N  14.570  13.149  74.676   2.727   2.334   10.580  C7N   NDP  39  
NDP  O7N   NO7   O  0  1  N  N  N  15.195  13.084  73.617   3.594   1.517   10.831  O7N   NDP  40  
NDP  N7N   NN7   N  0  1  N  N  N  13.875  12.134  75.201   2.848   3.602   11.019  N7N   NDP  41  
NDP  C4N   NC4   C  0  1  N  N  N  15.372  15.535  75.135   0.528   2.970    9.530  C4N   NDP  42  
NDP  C5N   NC5   C  0  1  N  N  N  15.197  16.797  75.724  -0.737   2.307    9.075  C5N   NDP  43  
NDP  C6N   NC6   C  0  1  N  N  N  14.129  17.013  76.594  -0.762   1.053    8.683  C6N   NDP  44  
NDP  P2B   AP2*  P  0  1  N  N  N  20.498  16.705  79.233  -1.639   0.622   -8.141  P2B   NDP  45  
NDP  O1X   AOP1  O  0  1  N  N  N  20.729  15.259  78.980  -2.944   0.099   -7.677  O1X   NDP  46  
NDP  O2X   AOP2  O  0  1  N  N  N  20.487  17.102  80.666  -1.829   1.351   -9.564  O2X   NDP  47  
NDP  O3X   AOP3  O  0  1  N  N  N  21.297  17.612  78.377  -0.597  -0.594   -8.296  O3X   NDP  48  
NDP  HOA2  2HOA  H  0  0  N  N  N  15.561  10.257  79.082  -2.238   1.777    0.665  HOA2  NDP  49  
NDP  H51A  AH51  H  0  0  N  N  N  13.955  14.504  79.983  -1.703  -0.093   -2.635  H51A  NDP  50  
NDP  H52A  AH52  H  0  0  N  N  N  15.155  14.466  81.148  -2.256   1.481   -2.017  H52A  NDP  51  
NDP  H4B   AH4*  H  0  1  N  N  N  15.777  14.903  78.148  -0.355   2.594   -3.179  H4B   NDP  52  
NDP  H3B   AH3*  H  0  1  N  N  N  17.519  14.715  80.602  -2.604   1.239   -4.454  H3B   NDP  53  
NDP  HO3A  AHO3  H  0  0  N  N  N  19.038  14.312  78.934  -2.317   3.505   -4.281  HO3A  NDP  54  
NDP  H2B   AH2*  H  0  1  N  N  N  18.244  16.917  80.532  -1.290  -0.046   -5.924  H2B   NDP  55  
NDP  H1B   AH1*  H  0  1  N  N  N  16.706  17.682  78.046   1.011   1.958   -5.588  H1B   NDP  56  
NDP  H8A   AH8   H  0  1  N  N  N  17.027  18.168  81.897   0.898  -1.737   -4.588  H8A   NDP  57  
NDP  H61A  AH61  H  0  0  N  N  N  15.089  23.867  81.046   4.545  -2.932   -9.399  H61A  NDP  58  
NDP  H62A  AH62  H  0  0  N  N  N  16.396  22.986  81.514   3.795  -3.524   -8.018  H62A  NDP  59  
NDP  H2A   AH2   H  0  1  N  N  N  14.819  21.751  76.908   3.354   1.459   -9.700  H2A   NDP  60  
NDP  H21N  NH21  H  0  0  N  N  N  11.111   9.788  78.433  -0.838  -2.803    1.626  H21N  NDP  61  
NDP  H51N  NH51  H  0  0  N  N  N   9.818  12.593  79.320  -1.388  -2.690    4.267  H51N  NDP  62  
NDP  H52N  NH52  H  0  0  N  N  N  11.094  12.998  80.333  -1.941  -1.115    4.884  H52N  NDP  63  
NDP  H4D   NH4*  H  0  1  N  N  N   9.980  15.056  79.565   0.614  -2.566    5.737  H4D   NDP  64  
NDP  H3D   NH3*  H  0  1  N  N  N  10.407  13.867  76.750  -2.189  -2.377    6.853  H3D   NDP  65  
NDP  HO3N  NHO3  H  0  0  N  N  N   8.362  14.770  76.489  -1.489  -4.352    7.777  HO3N  NDP  66  
NDP  H2D   NH2*  H  0  1  N  N  N  10.861  16.092  75.899  -1.480  -1.377    8.813  H2D   NDP  67  
NDP  HO2N  NHO2  H  0  0  N  N  N  10.265  17.981  77.100  -0.857  -3.514    9.444  HO2N  NDP  68  
NDP  H1D   NH1*  H  0  1  N  N  N  12.186  17.209  78.147   1.426  -1.417    7.981  H1D   NDP  69  
NDP  H2N   NH2   H  0  1  N  N  N  12.799  13.840  76.594   2.266  -0.028    9.619  H2N   NDP  70  
NDP  H71N  NH71  H  0  0  N  N  N  13.357  12.187  76.078   3.626   3.864   11.535  H71N  NDP  71  
NDP  H72N  NH72  H  0  0  N  N  N  13.923  11.249  74.695   2.159   4.254   10.815  H72N  NDP  72  
NDP  H41N  NH41  H  0  0  N  N  N  16.413  15.195  75.342   0.325   3.556   10.426  H41N  NDP  73  
NDP  H42N  NH42  H  0  0  N  N  N  15.393  15.667  74.028   0.888   3.634    8.743  H42N  NDP  74  
NDP  H5N   NH5   H  0  1  N  N  N  15.898  17.618  75.503  -1.656   2.876    9.075  H5N   NDP  75  
NDP  H6N   NH6   H  0  1  N  N  N  13.977  18.012  77.035  -1.695   0.614    8.363  H6N   NDP  76  
NDP  HOP2  2HOP  H  0  0  N  N  N  21.375  16.998  80.987  -2.169   0.684  -10.176  HOP2  NDP  77  
NDP  HOP3  3HOP  H  0  0  N  N  N  22.185  17.508  78.698   0.236  -0.211   -8.599  HOP3  NDP  78  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
NDP  PA   O1A   DOUB  N  N   1  
NDP  PA   O2A   SING  N  N   2  
NDP  PA   O5B   SING  N  N   3  
NDP  PA   O3    SING  N  N   4  
NDP  O2A  HOA2  SING  N  N   5  
NDP  O5B  C5B   SING  N  N   6  
NDP  C5B  C4B   SING  N  N   7  
NDP  C5B  H51A  SING  N  N   8  
NDP  C5B  H52A  SING  N  N   9  
NDP  C4B  O4B   SING  N  N  10  
NDP  C4B  C3B   SING  N  N  11  
NDP  C4B  H4B   SING  N  N  12  
NDP  O4B  C1B   SING  N  N  13  
NDP  C3B  O3B   SING  N  N  14  
NDP  C3B  C2B   SING  N  N  15  
NDP  C3B  H3B   SING  N  N  16  
NDP  O3B  HO3A  SING  N  N  17  
NDP  C2B  O2B   SING  N  N  18  
NDP  C2B  C1B   SING  N  N  19  
NDP  C2B  H2B   SING  N  N  20  
NDP  O2B  P2B   SING  N  N  21  
NDP  C1B  N9A   SING  N  N  22  
NDP  C1B  H1B   SING  N  N  23  
NDP  N9A  C8A   SING  Y  N  24  
NDP  N9A  C4A   SING  Y  N  25  
NDP  C8A  N7A   DOUB  Y  N  26  
NDP  C8A  H8A   SING  N  N  27  
NDP  N7A  C5A   SING  Y  N  28  
NDP  C5A  C6A   SING  Y  N  29  
NDP  C5A  C4A   DOUB  Y  N  30  
NDP  C6A  N6A   SING  N  N  31  
NDP  C6A  N1A   DOUB  Y  N  32  
NDP  N6A  H61A  SING  N  N  33  
NDP  N6A  H62A  SING  N  N  34  
NDP  N1A  C2A   SING  Y  N  35  
NDP  C2A  N3A   DOUB  Y  N  36  
NDP  C2A  H2A   SING  N  N  37  
NDP  N3A  C4A   SING  Y  N  38  
NDP  O3   PN    SING  N  N  39  
NDP  PN   O1N   DOUB  N  N  40  
NDP  PN   O2N   SING  N  N  41  
NDP  PN   O5D   SING  N  N  42  
NDP  O2N  H21N  SING  N  N  43  
NDP  O5D  C5D   SING  N  N  44  
NDP  C5D  C4D   SING  N  N  45  
NDP  C5D  H51N  SING  N  N  46  
NDP  C5D  H52N  SING  N  N  47  
NDP  C4D  O4D   SING  N  N  48  
NDP  C4D  C3D   SING  N  N  49  
NDP  C4D  H4D   SING  N  N  50  
NDP  O4D  C1D   SING  N  N  51  
NDP  C3D  O3D   SING  N  N  52  
NDP  C3D  C2D   SING  N  N  53  
NDP  C3D  H3D   SING  N  N  54  
NDP  O3D  HO3N  SING  N  N  55  
NDP  C2D  O2D   SING  N  N  56  
NDP  C2D  C1D   SING  N  N  57  
NDP  C2D  H2D   SING  N  N  58  
NDP  O2D  HO2N  SING  N  N  59  
NDP  C1D  N1N   SING  N  N  60  
NDP  C1D  H1D   SING  N  N  61  
NDP  N1N  C2N   SING  N  N  62  
NDP  N1N  C6N   SING  N  N  63  
NDP  C2N  C3N   DOUB  N  N  64  
NDP  C2N  H2N   SING  N  N  65  
NDP  C3N  C7N   SING  N  N  66  
NDP  C3N  C4N   SING  N  N  67  
NDP  C7N  O7N   DOUB  N  N  68  
NDP  C7N  N7N   SING  N  N  69  
NDP  N7N  H71N  SING  N  N  70  
NDP  N7N  H72N  SING  N  N  71  
NDP  C4N  C5N   SING  N  N  72  
NDP  C4N  H41N  SING  N  N  73  
NDP  C4N  H42N  SING  N  N  74  
NDP  C5N  C6N   DOUB  N  N  75  
NDP  C5N  H5N   SING  N  N  76  
NDP  C6N  H6N   SING  N  N  77  
NDP  P2B  O1X   DOUB  N  N  78  
NDP  P2B  O2X   SING  N  N  79  
NDP  P2B  O3X   SING  N  N  80  
NDP  O2X  HOP2  SING  N  N  81  
NDP  O3X  HOP3  SING  N  N  82  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
NDP  SMILES_CANONICAL  CACTVS                3.341  "NC(=O)C1=CN(C=CC1)[C@@H]2O[C@H](CO[P@@](O)(=O)O[P@](O)(=O)OC[C@H]3O[C@H]([C@H](O[P](O)(O)=O)[C@@H]3O)n4cnc5c(N)ncnc45)[C@@H](O)[C@H]2O"  
NDP  SMILES            CACTVS                3.341  "NC(=O)C1=CN(C=CC1)[CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O[P](O)(O)=O)[CH]3O)n4cnc5c(N)ncnc45)[CH](O)[CH]2O"  
NDP  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)O[P@@](=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)N5C=CCC(=C5)C(=O)N)O)O)O)OP(=O)(O)O)N"  
NDP  SMILES            "OpenEye OEToolkits"  1.5.0  "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)N5C=CCC(=C5)C(=O)N)O)O)O)OP(=O)(O)O)N"  
NDP  InChI             InChI                 1.03   "InChI=1S/C21H30N7O17P3/c22-17-12-19(25-7-24-17)28(8-26-12)21-16(44-46(33,34)35)14(30)11(43-21)6-41-48(38,39)45-47(36,37)40-5-10-13(29)15(31)20(42-10)27-3-1-2-9(4-27)18(23)32/h1,3-4,7-8,10-11,13-16,20-21,29-31H,2,5-6H2,(H2,23,32)(H,36,37)(H,38,39)(H2,22,24,25)(H2,33,34,35)/t10-,11-,13-,14-,15-,16-,20-,21-/m1/s1"  
NDP  InChIKey          InChI                 1.03   ACFIXJIJDZMPPO-NNYOXOHSSA-N  
#
_pdbx_chem_comp_identifier.comp_id          NDP
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  1.5.0
_pdbx_chem_comp_identifier.identifier       "[[(2R,3S,4R,5R)-5-(3-aminocarbonyl-4H-pyridin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] [(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-3-hydroxy-4-phosphonooxy-oxolan-2-yl]methyl hydrogen phosphate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
NDP  "Create component"   1999-07-08  RCSB  
NDP  "Modify descriptor"  2011-06-04  RCSB  
##
