data_P2J
#

_chem_comp.id                                   P2J
_chem_comp.name                                 "9-(5-{[(3S)-3-amino-3-carboxypropyl](pentyl)amino}-5-deoxy-beta-L-arabinofuranosyl)-9H-purin-6-amine"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C19 H31 N7 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-07-25
_chem_comp.pdbx_modified_date                   2020-08-14
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       437.493
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    P2J
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6PVB
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
P2J  C4   C1   C  0  1  Y  N  N  -24.176  19.381  -10.973  -6.114   1.156   0.307  C4   P2J   1  
P2J  C6   C2   C  0  1  Y  N  N  -25.422  20.605   -9.443  -5.698  -0.733   1.567  C6   P2J   2  
P2J  C8   C3   C  0  1  Y  N  N  -23.683  19.520   -6.511  -2.252  -0.978   0.714  C8   P2J   3  
P2J  C10  C4   C  0  1  N  N  S  -21.874  17.943   -7.183  -1.780   0.951  -0.842  C10  P2J   4  
P2J  C12  C5   C  0  1  N  N  S  -20.847  15.958   -6.581   0.393   1.202  -1.602  C12  P2J   5  
P2J  N3   N1   N  0  1  Y  N  N  -23.442  18.894   -9.988  -4.871   1.228  -0.119  N3   P2J   6  
P2J  C13  C6   C  0  1  N  N  R  -20.263  16.291   -7.680  -0.462   0.952  -2.859  C13  P2J   7  
P2J  C14  C7   C  0  1  N  N  R  -21.243  17.242   -8.390  -1.811   0.435  -2.304  C14  P2J   8  
P2J  C15  C8   C  0  1  N  N  N  -21.269  14.475   -6.681   1.672   0.364  -1.664  C15  P2J   9  
P2J  C1   C9   C  0  1  Y  N  N  -24.653  20.103   -8.381  -4.360  -0.698   1.140  C1   P2J  10  
P2J  C18  C10  C  0  1  N  N  N  -19.681  13.491   -4.923   3.582  -0.357  -0.363  C18  P2J  11  
P2J  C19  C11  C  0  1  N  N  N  -19.284  11.989   -5.066   3.047  -1.720   0.080  C19  P2J  12  
P2J  C2   C12  C  0  1  Y  N  N  -23.633  19.213   -8.683  -3.969   0.332   0.268  C2   P2J  13  
P2J  C20  C13  C  0  1  N  N  S  -19.334  11.528   -6.547   4.200  -2.725   0.144  C20  P2J  14  
P2J  C24  C14  C  0  1  N  N  N  -22.065  14.047   -4.288   2.962   1.983  -0.408  C24  P2J  15  
P2J  C25  C15  C  0  1  N  N  N  -22.993  12.766   -3.962   3.431   2.310   1.011  C25  P2J  16  
P2J  C26  C16  C  0  1  N  N  N  -23.664  12.863   -2.481   3.814   3.789   1.093  C26  P2J  17  
P2J  C27  C17  C  0  1  N  N  N  -25.263  12.583   -2.500   4.283   4.117   2.512  C27  P2J  18  
P2J  C28  C18  C  0  1  N  N  N  -25.617  11.239   -1.670   4.667   5.596   2.593  C28  P2J  19  
P2J  C75  C19  C  0  1  N  N  N  -18.108  10.699   -6.887   3.697  -4.033   0.697  C75  P2J  20  
P2J  N16  N2   N  0  1  N  N  N  -21.097  13.662   -5.402   2.471   0.599  -0.454  N16  P2J  21  
P2J  N17  N3   N  0  1  N  N  N  -26.515  21.547   -9.164  -6.142  -1.724   2.425  N17  P2J  22  
P2J  N21  N4   N  0  1  N  N  N  -20.534  10.756   -6.785   4.738  -2.938  -1.207  N21  P2J  23  
P2J  N5   N5   N  0  1  Y  N  N  -25.159  20.230  -10.695  -6.528   0.207   1.126  N5   P2J  24  
P2J  N7   N6   N  0  1  Y  N  N  -24.656  20.260   -7.040  -3.266  -1.462   1.372  N7   P2J  25  
P2J  N9   N7   N  0  1  Y  N  N  -23.052  18.866   -7.481  -2.635   0.129   0.017  N9   P2J  26  
P2J  O11  O1   O  0  1  N  N  N  -22.155  16.935   -6.438  -0.393   0.809  -0.465  O11  P2J  27  
P2J  O22  O2   O  0  1  N  N  N  -18.965  17.014   -7.403  -0.653   2.168  -3.584  O22  P2J  28  
P2J  O23  O3   O  0  1  N  N  N  -22.184  16.527   -9.067  -1.864  -0.993  -2.339  O23  P2J  29  
P2J  O76  O4   O  0  1  N  N  N  -17.834   9.666   -6.218   3.536  -4.185   2.021  O76  P2J  30  
P2J  O77  O5   O  0  1  N  N  N  -17.365  11.048   -7.846   3.437  -4.945  -0.052  O77  P2J  31  
P2J  H1   H1   H  0  1  N  N  N  -23.978  19.091  -11.995  -6.821   1.903  -0.023  H1   P2J  32  
P2J  H2   H2   H  0  1  N  N  N  -23.444  19.461   -5.459  -1.255  -1.393   0.719  H2   P2J  33  
P2J  H3   H3   H  0  1  N  N  N  -21.089  18.558   -6.719  -2.085   1.997  -0.798  H3   P2J  34  
P2J  H4   H4   H  0  1  N  N  N  -20.215  16.098   -5.691   0.647   2.259  -1.530  H4   P2J  35  
P2J  H5   H5   H  0  1  N  N  N  -20.066  15.429   -8.335   0.004   0.199  -3.495  H5   P2J  36  
P2J  H6   H6   H  0  1  N  N  N  -20.700  17.961   -9.020  -2.649   0.868  -2.851  H6   P2J  37  
P2J  H7   H7   H  0  1  N  N  N  -22.331  14.442   -6.965   1.411  -0.693  -1.728  H7   P2J  38  
P2J  H8   H8   H  0  1  N  N  N  -20.664  14.002   -7.469   2.251   0.649  -2.543  H8   P2J  39  
P2J  H9   H9   H  0  1  N  N  N  -19.007  14.112   -5.531   4.311   0.001   0.364  H9   P2J  40  
P2J  H10  H10  H  0  1  N  N  N  -19.608  13.795   -3.868   4.060  -0.454  -1.338  H10  P2J  41  
P2J  H11  H11  H  0  1  N  N  N  -19.983  11.377   -4.477   2.591  -1.629   1.066  H11  P2J  42  
P2J  H12  H12  H  0  1  N  N  N  -18.262  11.851   -4.683   2.302  -2.068  -0.634  H12  P2J  43  
P2J  H13  H13  H  0  1  N  N  N  -19.340  12.424   -7.185   4.986  -2.335   0.790  H13  P2J  44  
P2J  H14  H14  H  0  1  N  N  N  -21.502  14.337   -3.389   2.158   2.663  -0.691  H14  P2J  45  
P2J  H15  H15  H  0  1  N  N  N  -22.693  14.889   -4.615   3.795   2.096  -1.101  H15  P2J  46  
P2J  H16  H16  H  0  1  N  N  N  -23.795  12.708   -4.713   2.625   2.105   1.717  H16  P2J  47  
P2J  H17  H17  H  0  1  N  N  N  -22.375  11.857   -4.014   4.296   1.696   1.259  H17  P2J  48  
P2J  H18  H18  H  0  1  N  N  N  -23.184  12.120   -1.827   4.619   3.995   0.387  H18  P2J  49  
P2J  H19  H19  H  0  1  N  N  N  -23.488  13.872   -2.080   2.948   4.404   0.845  H19  P2J  50  
P2J  H20  H20  H  0  1  N  N  N  -25.785  13.437   -2.044   3.478   3.911   3.217  H20  P2J  51  
P2J  H21  H21  H  0  1  N  N  N  -25.596  12.463   -3.541   5.149   3.503   2.759  H21  P2J  52  
P2J  H22  H22  H  0  1  N  N  N  -26.703  11.067   -1.695   5.001   5.830   3.604  H22  P2J  53  
P2J  H23  H23  H  0  1  N  N  N  -25.100  10.381   -2.124   5.472   5.802   1.888  H23  P2J  54  
P2J  H24  H24  H  0  1  N  N  N  -25.288  11.355   -0.627   3.801   6.210   2.345  H24  P2J  55  
P2J  H26  H26  H  0  1  N  N  N  -26.958  21.807  -10.022  -5.527  -2.405   2.740  H26  P2J  56  
P2J  H27  H27  H  0  1  N  N  N  -27.184  21.112   -8.562  -7.068  -1.737   2.713  H27  P2J  57  
P2J  H28  H28  H  0  1  N  N  N  -21.336  11.308   -6.559   5.541  -3.548  -1.183  H28  P2J  58  
P2J  H29  H29  H  0  1  N  N  N  -20.573  10.490   -7.748   4.027  -3.300  -1.826  H29  P2J  59  
P2J  H31  H31  H  0  1  N  N  N  -18.361  16.426   -6.965  -1.185   2.069  -4.386  H31  P2J  60  
P2J  H32  H32  H  0  1  N  N  N  -22.783  17.123   -9.501  -1.796  -1.367  -3.228  H32  P2J  61  
P2J  H33  H33  H  0  1  N  N  N  -17.043   9.267   -6.561   3.211  -5.042   2.328  H33  P2J  62  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
P2J  C4   N5   DOUB  Y  N   1  
P2J  C4   N3   SING  Y  N   2  
P2J  N5   C6   SING  Y  N   3  
P2J  N3   C2   DOUB  Y  N   4  
P2J  C6   N17  SING  N  N   5  
P2J  C6   C1   DOUB  Y  N   6  
P2J  O23  C14  SING  N  N   7  
P2J  C2   C1   SING  Y  N   8  
P2J  C2   N9   SING  Y  N   9  
P2J  C14  C13  SING  N  N  10  
P2J  C14  C10  SING  N  N  11  
P2J  C1   N7   SING  Y  N  12  
P2J  O77  C75  DOUB  N  N  13  
P2J  C13  O22  SING  N  N  14  
P2J  C13  C12  SING  N  N  15  
P2J  N9   C10  SING  N  N  16  
P2J  N9   C8   SING  Y  N  17  
P2J  C10  O11  SING  N  N  18  
P2J  N7   C8   DOUB  Y  N  19  
P2J  C75  C20  SING  N  N  20  
P2J  C75  O76  SING  N  N  21  
P2J  N21  C20  SING  N  N  22  
P2J  C15  C12  SING  N  N  23  
P2J  C15  N16  SING  N  N  24  
P2J  C12  O11  SING  N  N  25  
P2J  C20  C19  SING  N  N  26  
P2J  N16  C18  SING  N  N  27  
P2J  N16  C24  SING  N  N  28  
P2J  C19  C18  SING  N  N  29  
P2J  C24  C25  SING  N  N  30  
P2J  C25  C26  SING  N  N  31  
P2J  C27  C26  SING  N  N  32  
P2J  C27  C28  SING  N  N  33  
P2J  C4   H1   SING  N  N  34  
P2J  C8   H2   SING  N  N  35  
P2J  C10  H3   SING  N  N  36  
P2J  C12  H4   SING  N  N  37  
P2J  C13  H5   SING  N  N  38  
P2J  C14  H6   SING  N  N  39  
P2J  C15  H7   SING  N  N  40  
P2J  C15  H8   SING  N  N  41  
P2J  C18  H9   SING  N  N  42  
P2J  C18  H10  SING  N  N  43  
P2J  C19  H11  SING  N  N  44  
P2J  C19  H12  SING  N  N  45  
P2J  C20  H13  SING  N  N  46  
P2J  C24  H14  SING  N  N  47  
P2J  C24  H15  SING  N  N  48  
P2J  C25  H16  SING  N  N  49  
P2J  C25  H17  SING  N  N  50  
P2J  C26  H18  SING  N  N  51  
P2J  C26  H19  SING  N  N  52  
P2J  C27  H20  SING  N  N  53  
P2J  C27  H21  SING  N  N  54  
P2J  C28  H22  SING  N  N  55  
P2J  C28  H23  SING  N  N  56  
P2J  C28  H24  SING  N  N  57  
P2J  N17  H26  SING  N  N  58  
P2J  N17  H27  SING  N  N  59  
P2J  N21  H28  SING  N  N  60  
P2J  N21  H29  SING  N  N  61  
P2J  O22  H31  SING  N  N  62  
P2J  O23  H32  SING  N  N  63  
P2J  O76  H33  SING  N  N  64  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
P2J  SMILES            ACDLabs               12.01  "c2nc(N)c3ncn(C1OC(C(O)C1O)CN(CCC(C(O)=O)N)CCCCC)c3n2"  
P2J  InChI             InChI                 1.03   "InChI=1S/C19H31N7O5/c1-2-3-4-6-25(7-5-11(20)19(29)30)8-12-14(27)15(28)18(31-12)26-10-24-13-16(21)22-9-23-17(13)26/h9-12,14-15,18,27-28H,2-8,20H2,1H3,(H,29,30)(H2,21,22,23)/t11-,12-,14-,15+,18-/m0/s1"  
P2J  InChIKey          InChI                 1.03   IZQBBTVZUZUZGN-VQYVRKMMSA-N  
P2J  SMILES_CANONICAL  CACTVS                3.385  "CCCCCN(CC[C@H](N)C(O)=O)C[C@@H]1O[C@@H]([C@H](O)[C@H]1O)n2cnc3c(N)ncnc23"  
P2J  SMILES            CACTVS                3.385  "CCCCCN(CC[CH](N)C(O)=O)C[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23"  
P2J  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CCCCCN(CC[C@@H](C(=O)O)N)C[C@H]1[C@@H]([C@H]([C@H](O1)n2cnc3c2ncnc3N)O)O"  
P2J  SMILES            "OpenEye OEToolkits"  2.0.7  "CCCCCN(CCC(C(=O)O)N)CC1C(C(C(O1)n2cnc3c2ncnc3N)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
P2J  "SYSTEMATIC NAME"  ACDLabs               12.01  "9-(5-{[(3S)-3-amino-3-carboxypropyl](pentyl)amino}-5-deoxy-beta-L-arabinofuranosyl)-9H-purin-6-amine"  
P2J  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(2~{S})-4-[[(2~{S},3~{R},4~{R},5~{S})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-pentyl-amino]-2-azanyl-butanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
P2J  "Create component"  2019-07-25  RCSB  
P2J  "Initial release"   2020-08-19  RCSB  
##
