data_PJ5
#

_chem_comp.id                                   PJ5
_chem_comp.name                                 "(1~{S},2~{S},3~{S},4~{S})-4-(hydroxymethyl)cyclopentane-1,2,3-triol"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C6 H12 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-04-20
_chem_comp.pdbx_modified_date                   2021-01-22
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       148.157
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    PJ5
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6YQH
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PJ5  "O1'"   O1   O  0  1  N  N  N  34.818  -28.982  5.758  -2.206  -1.686   0.151  "O1'"   PJ5   1  
PJ5  "C1'"   C1   C  0  1  N  N  S  33.837  -28.067  5.282  -1.204  -0.815   0.679  "C1'"   PJ5   2  
PJ5  "C6'"   C2   C  0  1  N  N  N  33.253  -27.166  6.376   0.204  -1.261   0.212  "C6'"   PJ5   3  
PJ5  "C2'"   C3   C  0  1  N  N  S  34.539  -27.116  4.315  -1.362   0.606   0.098  "C2'"   PJ5   4  
PJ5  "O2'"   O2   O  0  1  N  N  N  35.357  -27.750  3.362  -2.066   0.550  -1.144  "O2'"   PJ5   5  
PJ5  "C3'"   C4   C  0  1  N  N  S  35.230  -26.122  5.234   0.059   1.151  -0.125  "C3'"   PJ5   6  
PJ5  "O3'"   O3   O  0  1  N  N  N  35.663  -24.881  4.562   0.261   2.329   0.658  "O3'"   PJ5   7  
PJ5  "C4'"   C5   C  0  1  N  N  S  34.176  -25.870  6.298   1.032   0.042   0.328  "C4'"   PJ5   8  
PJ5  "C5'"   C6   C  0  1  N  N  N  34.830  -25.567  7.649   2.250  -0.013  -0.597  "C5'"   PJ5   9  
PJ5  "O5'"   O4   O  0  1  N  N  N  36.102  -26.049  7.880   3.189  -0.964  -0.093  "O5'"   PJ5  10  
PJ5  HA      H1   H  0  1  N  N  N  34.415  -29.592  6.365  -3.107  -1.452   0.412  HA      PJ5  11  
PJ5  "H1'"   H2   H  0  1  N  N  N  33.023  -28.592  4.761  -1.255  -0.791   1.768  "H1'"   PJ5  12  
PJ5  "H6'"   H3   H  0  1  N  N  N  32.202  -26.917  6.165   0.603  -2.033   0.870  "H6'"   PJ5  13  
PJ5  "H6'1"  H4   H  0  0  N  N  N  33.325  -27.645  7.364   0.175  -1.613  -0.820  "H6'1"  PJ5  14  
PJ5  "H2'"   H5   H  0  1  N  N  N  33.751  -26.564  3.782  -1.899   1.240   0.804  "H2'"   PJ5  15  
PJ5  HB      H6   H  0  1  N  N  N  34.833  -28.347  2.841  -2.970   0.215  -1.070  HB      PJ5  16  
PJ5  "H3'"   H7   H  0  1  N  N  N  36.099  -26.610  5.700   0.212   1.373  -1.181  "H3'"   PJ5  17  
PJ5  HC      H8   H  0  1  N  N  N  36.085  -24.309  5.193  -0.337   3.056   0.435  HC      PJ5  18  
PJ5  "H4'"   H9   H  0  1  N  N  N  33.552  -25.015  5.998   1.343   0.206   1.360  "H4'"   PJ5  19  
PJ5  "H5'1"  H10  H  0  0  N  N  N  34.872  -24.473  7.753   1.933  -0.310  -1.597  "H5'1"  PJ5  20  
PJ5  "H5'2"  H11  H  0  0  N  N  N  34.176  -25.985  8.429   2.717   0.971  -0.642  "H5'2"  PJ5  21  
PJ5  "H5'"   H12  H  0  1  N  N  N  36.386  -25.791  8.749   3.988  -1.051  -0.631  "H5'"   PJ5  22  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PJ5  "O2'"  "C2'"   SING  N  N   1  
PJ5  "C2'"  "C3'"   SING  N  N   2  
PJ5  "C2'"  "C1'"   SING  N  N   3  
PJ5  "O3'"  "C3'"   SING  N  N   4  
PJ5  "C3'"  "C4'"   SING  N  N   5  
PJ5  "C1'"  "O1'"   SING  N  N   6  
PJ5  "C1'"  "C6'"   SING  N  N   7  
PJ5  "C4'"  "C6'"   SING  N  N   8  
PJ5  "C4'"  "C5'"   SING  N  N   9  
PJ5  "C5'"  "O5'"   SING  N  N  10  
PJ5  "O1'"  HA      SING  N  N  11  
PJ5  "C1'"  "H1'"   SING  N  N  12  
PJ5  "C6'"  "H6'"   SING  N  N  13  
PJ5  "C6'"  "H6'1"  SING  N  N  14  
PJ5  "C2'"  "H2'"   SING  N  N  15  
PJ5  "O2'"  HB      SING  N  N  16  
PJ5  "C3'"  "H3'"   SING  N  N  17  
PJ5  "O3'"  HC      SING  N  N  18  
PJ5  "C4'"  "H4'"   SING  N  N  19  
PJ5  "C5'"  "H5'1"  SING  N  N  20  
PJ5  "C5'"  "H5'2"  SING  N  N  21  
PJ5  "O5'"  "H5'"   SING  N  N  22  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PJ5  InChI             InChI                 1.03   "InChI=1S/C6H12O4/c7-2-3-1-4(8)6(10)5(3)9/h3-10H,1-2H2/t3-,4-,5-,6-/m0/s1"  
PJ5  InChIKey          InChI                 1.03   PHKHGSSZAJVEQK-BXKVDMCESA-N  
PJ5  SMILES_CANONICAL  CACTVS                3.385  "OC[C@@H]1C[C@H](O)[C@H](O)[C@H]1O"  
PJ5  SMILES            CACTVS                3.385  "OC[CH]1C[CH](O)[CH](O)[CH]1O"  
PJ5  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C1[C@H]([C@@H]([C@H]([C@H]1O)O)O)CO"  
PJ5  SMILES            "OpenEye OEToolkits"  2.0.7  "C1C(C(C(C1O)O)O)CO"  
#
_pdbx_chem_comp_identifier.comp_id          PJ5
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(1~{S},2~{S},3~{S},4~{S})-4-(hydroxymethyl)cyclopentane-1,2,3-triol"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PJ5  "Create component"  2020-04-20  PDBE  
PJ5  "Initial release"   2021-01-27  RCSB  
##
