data_PN8
#

_chem_comp.id                                   PN8
_chem_comp.name                                 "(1~{S},2~{R},3~{R},4~{S},5~{S})-4-[[($l^{5}-azanylidyne-$l^{5}-azanyl)amino]methyl]cyclohexane-1,2,3,5-tetrol"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C7 H14 N3 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   1
_chem_comp.pdbx_initial_date                    2020-04-26
_chem_comp.pdbx_modified_date                   2021-05-07
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       204.204
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    PN8
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  Y
_chem_comp.pdbx_model_coordinates_db_code       6YTP
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PN8  C3   C1   C  0  1  N  N  S  -66.670  -41.748  -5.194  ?  ?  ?  C3   PN8   1  
PN8  C2   C2   C  0  1  N  N  N  -66.073  -42.955  -7.371  ?  ?  ?  C2   PN8   2  
PN8  C6   C3   C  0  1  N  N  R  -69.199  -40.789  -6.370  ?  ?  ?  C6   PN8   3  
PN8  C4   C4   C  0  1  N  N  N  -67.807  -41.240  -4.288  ?  ?  ?  C4   PN8   4  
PN8  C1   C5   C  0  1  N  N  S  -67.211  -42.353  -6.512  ?  ?  ?  C1   PN8   5  
PN8  O1   O1   O  0  1  N  N  N  -65.759  -40.709  -5.528  ?  ?  ?  O1   PN8   6  
PN8  N    N1   N  0  1  N  N  N  -65.442  -42.049  -8.330  ?  ?  ?  N    PN8   7  
PN8  N1   N2   N  1  1  N  N  N  -65.007  -40.755  -8.032  ?  ?  ?  N1   PN8   8  
PN8  N2   N3   N  0  1  N  N  N  -64.623  -39.658  -7.863  ?  ?  ?  N2   PN8   9  
PN8  C5   C6   C  0  1  N  N  S  -68.603  -40.197  -5.076  ?  ?  ?  C5   PN8  10  
PN8  O2   O2   O  0  1  N  N  N  -69.628  -39.607  -4.282  ?  ?  ?  O2   PN8  11  
PN8  O3   O3   O  0  1  N  N  N  -69.892  -39.775  -7.091  ?  ?  ?  O3   PN8  12  
PN8  C    C7   C  0  1  N  N  R  -68.101  -41.348  -7.258  ?  ?  ?  C    PN8  13  
PN8  O    O4   O  0  1  N  N  N  -68.689  -41.951  -8.399  ?  ?  ?  O    PN8  14  
PN8  H2   H1   H  0  1  N  N  N  -66.136  -42.543  -4.653  ?  ?  ?  H2   PN8  15  
PN8  H7   H2   H  0  1  N  N  N  -66.490  -43.803  -7.934  ?  ?  ?  H7   PN8  16  
PN8  H6   H3   H  0  1  N  N  N  -65.292  -43.318  -6.687  ?  ?  ?  H6   PN8  17  
PN8  H4   H4   H  0  1  N  N  N  -69.888  -41.602  -6.099  ?  ?  ?  H4   PN8  18  
PN8  H10  H5   H  0  1  N  N  N  -68.463  -42.077  -4.006  ?  ?  ?  H10  PN8  19  
PN8  H9   H6   H  0  1  N  N  N  -67.386  -40.782  -3.381  ?  ?  ?  H9   PN8  20  
PN8  H1   H7   H  0  1  N  N  N  -67.861  -43.193  -6.224  ?  ?  ?  H1   PN8  21  
PN8  H8   H8   H  0  1  N  N  N  -65.413  -40.322  -4.732  ?  ?  ?  H8   PN8  22  
PN8  HN   H9   H  0  1  N  N  N  -65.313  -42.379  -9.265  ?  ?  ?  HN   PN8  23  
PN8  H3   H13  H  0  1  N  N  N  -67.897  -39.409  -5.377  ?  ?  ?  H3   PN8  24  
PN8  H11  H14  H  0  1  N  N  N  -69.248  -39.247  -3.489  ?  ?  ?  H11  PN8  25  
PN8  H12  H15  H  0  1  N  N  N  -70.583  -39.415  -6.547  ?  ?  ?  H12  PN8  26  
PN8  H    H16  H  0  1  N  N  N  -67.464  -40.510  -7.578  ?  ?  ?  H    PN8  27  
PN8  H5   H17  H  0  1  N  N  N  -69.235  -41.316  -8.847  ?  ?  ?  H5   PN8  28  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PN8  O   C    SING  N  N   1  
PN8  N   N1   SING  N  N   2  
PN8  N   C2   SING  N  N   3  
PN8  N1  N2   TRIP  N  N   4  
PN8  C2  C1   SING  N  N   5  
PN8  C   C1   SING  N  N   6  
PN8  C   C6   SING  N  N   7  
PN8  O3  C6   SING  N  N   8  
PN8  C1  C3   SING  N  N   9  
PN8  C6  C5   SING  N  N  10  
PN8  O1  C3   SING  N  N  11  
PN8  C3  C4   SING  N  N  12  
PN8  C5  C4   SING  N  N  13  
PN8  C5  O2   SING  N  N  14  
PN8  C3  H2   SING  N  N  15  
PN8  C2  H7   SING  N  N  16  
PN8  C2  H6   SING  N  N  17  
PN8  C6  H4   SING  N  N  18  
PN8  C4  H10  SING  N  N  19  
PN8  C4  H9   SING  N  N  20  
PN8  C1  H1   SING  N  N  21  
PN8  O1  H8   SING  N  N  22  
PN8  N   HN   SING  N  N  23  
PN8  C5  H3   SING  N  N  24  
PN8  O2  H11  SING  N  N  25  
PN8  O3  H12  SING  N  N  26  
PN8  C   H    SING  N  N  27  
PN8  O   H5   SING  N  N  28  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PN8  InChI             InChI                 1.03   "InChI=1S/C7H14N3O4/c8-10-9-2-3-4(11)1-5(12)7(14)6(3)13/h3-7,9,11-14H,1-2H2/t3-,4-,5-,6+,7+/m0/s1"  
PN8  InChIKey          InChI                 1.03   FBFTWYYGVGMNEW-YPPKRKOXSA-N  
PN8  SMILES_CANONICAL  CACTVS                3.385  "O[C@H]1C[C@H](O)[C@H](CN[N]#N)[C@@H](O)[C@@H]1O"  
PN8  SMILES            CACTVS                3.385  "O[CH]1C[CH](O)[CH](CN[N]#N)[CH](O)[CH]1O"  
PN8  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C1[C@@H]([C@@H]([C@H]([C@@H]([C@H]1O)O)O)CN[N]#N)O"  
PN8  SMILES            "OpenEye OEToolkits"  2.0.7  "C1C(C(C(C(C1O)O)O)CN[N]#N)O"  
#
_pdbx_chem_comp_identifier.comp_id          PN8
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(1~{S},2~{R},3~{R},4~{S},5~{S})-4-[[(azanylidyne-$l^{4}-azanyl)amino]methyl]cyclohexane-1,2,3,5-tetrol"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PN8  "Create component"  2020-04-26  PDBE  
PN8  "Initial release"   2021-05-12  RCSB  
##
