data_PXW
# 
_chem_comp.id                                    PXW 
_chem_comp.name                                  "(1R,2R,4S,7E)-7-[amino(sulfanyl)methylidene]-2-{[(1P)-3-chloro-3'-(1-cyanocyclopropyl)[1,1'-biphenyl]-4-carbonyl]amino}-7-azabicyclo[2.2.1]heptan-7-ium" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H24 Cl N4 O S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    1 
_chem_comp.pdbx_initial_date                     2022-05-31 
_chem_comp.pdbx_modified_date                    2023-01-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        451.992 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     PXW 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8D1T 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
PXW C10  C1  C  0 1 N N N 16.518 -9.444  0.284  -6.910 -1.761 0.183  C10  PXW 1  
PXW C13  C2  C  0 1 N N N 17.461 -10.127 -0.647 -6.334 -2.784 -0.706 C13  PXW 2  
PXW C15  C3  C  0 1 Y N N 14.612 -9.132  -1.156 -4.818 -0.398 0.063  C15  PXW 3  
PXW C17  C4  C  0 1 Y N N 11.187 -8.727  -4.421 -0.586 -0.262 -0.371 C17  PXW 4  
PXW C21  C5  C  0 1 N N R 7.710  -10.821 -6.783 3.703  -0.080 -0.806 C21  PXW 5  
PXW C22  C6  C  0 1 N N N 7.599  -11.354 -8.030 4.229  -1.388 -1.448 C22  PXW 6  
PXW C24  C7  C  0 1 N N N 7.266  -9.466  -8.979 4.214  -2.483 0.770  C24  PXW 7  
PXW C26  C8  C  0 1 N N R 7.090  -9.580  -6.779 4.397  -0.057 0.589  C26  PXW 8  
PXW C28  C9  C  0 1 N N N 4.771  -8.762  -7.600 6.934  -0.327 0.473  C28  PXW 9  
PXW C02  C10 C  0 1 Y N N 10.999 -10.464 -2.852 -0.648 2.152  -0.201 C02  PXW 10 
PXW C03  C11 C  0 1 Y N N 12.074 -10.007 -2.154 -2.018 2.105  -0.061 C03  PXW 11 
PXW C04  C12 C  0 1 Y N N 12.707 -8.891  -2.606 -2.679 0.877  -0.075 C04  PXW 12 
PXW C16  C13 C  0 1 Y N N 12.253 -8.250  -3.722 -1.955 -0.305 -0.231 C16  PXW 13 
PXW C18  C14 C  0 1 Y N N 10.563 -9.864  -4.014 0.079  0.967  -0.357 C18  PXW 14 
PXW C19  C15 C  0 1 N N N 9.337  -10.308 -4.803 1.547  1.015  -0.507 C19  PXW 15 
PXW C23  C16 C  0 1 N N S 6.676  -10.576 -8.743 5.168  -1.977 -0.353 C23  PXW 16 
PXW C25  C17 C  0 1 N N N 7.459  -8.785  -7.753 3.675  -1.162 1.418  C25  PXW 17 
PXW C05  C18 C  0 1 Y N N 13.777 -8.368  -1.908 -4.153 0.828  0.076  C05  PXW 18 
PXW C06  C19 C  0 1 Y N N 13.976 -7.023  -1.912 -4.880 2.007  0.231  C06  PXW 19 
PXW C07  C20 C  0 1 Y N N 15.000 -6.440  -1.217 -6.253 1.955  0.371  C07  PXW 20 
PXW C08  C21 C  0 1 Y N N 15.846 -7.215  -0.481 -6.906 0.736  0.357  C08  PXW 21 
PXW C09  C22 C  0 1 Y N N 15.636 -8.541  -0.487 -6.189 -0.438 0.203  C09  PXW 22 
PXW C12  C23 C  0 1 N N N 15.839 -10.379 1.266  -8.431 -1.740 0.343  C12  PXW 23 
PXW C11  C24 C  0 1 N N N 16.989 -9.499  1.722  -7.548 -2.238 1.489  C11  PXW 24 
PXW N20  N1  N  0 1 N N N 9.161  -10.423 -6.257 2.247  -0.127 -0.658 N20  PXW 25 
PXW N27  N2  N  1 1 N N N 5.737  -9.875  -7.578 5.707  -0.720 0.270  N27  PXW 26 
PXW N37  N3  N  0 1 N N N 4.695  -7.838  -6.668 7.176  0.887  1.074  N37  PXW 27 
PXW O38  O1  O  0 1 N N N 8.450  -10.494 -4.107 2.125  2.084  -0.495 O38  PXW 28 
PXW CL01 CL1 CL 0 0 N N N 10.286 -11.902 -2.226 0.176  3.680  -0.185 CL01 PXW 29 
PXW N14  N4  N  0 1 N N N 18.186 -10.649 -1.350 -5.890 -3.573 -1.391 N14  PXW 30 
PXW H1   H1  H  0 1 N N N 14.463 -10.200 -1.091 -4.260 -1.314 -0.062 H1   PXW 31 
PXW H2   H2  H  0 1 N N N 10.837 -8.203  -5.298 -0.026 -1.178 -0.488 H2   PXW 32 
PXW H3   H3  H  0 1 N N N 7.252  -11.482 -6.032 4.000  0.787  -1.397 H3   PXW 33 
PXW H4   H4  H  0 1 N N N 7.242  -12.392 -7.964 3.405  -2.071 -1.656 H4   PXW 34 
PXW H5   H5  H  0 1 N N N 8.576  -11.334 -8.535 4.786  -1.171 -2.360 H5   PXW 35 
PXW H6   H6  H  0 1 N N N 8.240  -9.658  -9.453 3.392  -3.059 0.345  H6   PXW 36 
PXW H7   H7  H  0 1 N N N 6.646  -8.853  -9.650 4.763  -3.076 1.502  H7   PXW 37 
PXW H8   H8  H  0 1 N N N 6.907  -9.132  -5.791 4.463  0.921  1.066  H8   PXW 38 
PXW H10  H10 H  0 1 N N N 12.415 -10.517 -1.265 -2.580 3.019  0.059  H10  PXW 39 
PXW H11  H11 H  0 1 N N N 12.748 -7.350  -4.056 -2.468 -1.255 -0.242 H11  PXW 40 
PXW H12  H12 H  0 1 N N N 6.089  -11.074 -9.529 5.908  -2.697 -0.702 H12  PXW 41 
PXW H13  H13 H  0 1 N N N 8.521  -8.522  -7.637 2.593  -1.095 1.311  H13  PXW 42 
PXW H14  H14 H  0 1 N N N 6.850  -7.869  -7.736 3.962  -1.105 2.469  H14  PXW 43 
PXW H15  H15 H  0 1 N N N 13.305 -6.396  -2.481 -4.371 2.959  0.242  H15  PXW 44 
PXW H16  H16 H  0 1 N N N 15.138 -5.369  -1.251 -6.817 2.868  0.491  H16  PXW 45 
PXW H17  H17 H  0 1 N N N 16.655 -6.779  0.086  -7.980 0.700  0.467  H17  PXW 46 
PXW H18  H18 H  0 1 N N N 14.815 -10.168 1.609  -8.911 -0.769 0.463  H18  PXW 47 
PXW H19  H19 H  0 1 N N N 15.980 -11.466 1.178  -9.006 -2.484 -0.209 H19  PXW 48 
PXW H20  H20 H  0 1 N N N 17.963 -9.949  1.965  -7.541 -3.309 1.690  H20  PXW 49 
PXW H21  H21 H  0 1 N N N 16.799 -8.651  2.396  -7.447 -1.595 2.363  H21  PXW 50 
PXW H22  H22 H  0 1 N N N 9.918  -10.259 -6.889 1.785  -0.981 -0.667 H22  PXW 51 
PXW H23  H23 H  0 1 N N N 3.885  -7.255  -6.607 6.435  1.450  1.347  H23  PXW 52 
PXW S1   S1  S  0 1 N Y N 3.510  -9.025  -8.751 8.280  -1.349 -0.023 S1   PXW 53 
PXW H9   H9  H  0 1 N N N 5.447  -7.718  -6.020 8.089  1.180  1.225  H9   PXW 54 
PXW H24  H24 H  0 1 N N N 2.788  -7.953  -8.611 9.363  -0.542 0.383  H24  PXW 55 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PXW C24 C23  SING N N 1  
PXW C24 C25  SING N N 2  
PXW C23 C22  SING N N 3  
PXW C23 N27  SING N N 4  
PXW C22 C21  SING N N 5  
PXW C25 C26  SING N N 6  
PXW C28 N27  DOUB N E 7  
PXW C28 N37  SING N N 8  
PXW N27 C26  SING N N 9  
PXW C21 C26  SING N N 10 
PXW C21 N20  SING N N 11 
PXW N20 C19  SING N N 12 
PXW C19 O38  DOUB N N 13 
PXW C19 C18  SING N N 14 
PXW C17 C18  DOUB Y N 15 
PXW C17 C16  SING Y N 16 
PXW C18 C02  SING Y N 17 
PXW C16 C04  DOUB Y N 18 
PXW C02 CL01 SING N N 19 
PXW C02 C03  DOUB Y N 20 
PXW C04 C03  SING Y N 21 
PXW C04 C05  SING N N 22 
PXW C06 C05  DOUB Y N 23 
PXW C06 C07  SING Y N 24 
PXW C05 C15  SING Y N 25 
PXW N14 C13  TRIP N N 26 
PXW C07 C08  DOUB Y N 27 
PXW C15 C09  DOUB Y N 28 
PXW C13 C10  SING N N 29 
PXW C09 C08  SING Y N 30 
PXW C09 C10  SING N N 31 
PXW C10 C12  SING N N 32 
PXW C10 C11  SING N N 33 
PXW C12 C11  SING N N 34 
PXW C15 H1   SING N N 35 
PXW C17 H2   SING N N 36 
PXW C21 H3   SING N N 37 
PXW C22 H4   SING N N 38 
PXW C22 H5   SING N N 39 
PXW C24 H6   SING N N 40 
PXW C24 H7   SING N N 41 
PXW C26 H8   SING N N 42 
PXW C03 H10  SING N N 43 
PXW C16 H11  SING N N 44 
PXW C23 H12  SING N N 45 
PXW C25 H13  SING N N 46 
PXW C25 H14  SING N N 47 
PXW C06 H15  SING N N 48 
PXW C07 H16  SING N N 49 
PXW C08 H17  SING N N 50 
PXW C12 H18  SING N N 51 
PXW C12 H19  SING N N 52 
PXW C11 H20  SING N N 53 
PXW C11 H21  SING N N 54 
PXW N20 H22  SING N N 55 
PXW N37 H23  SING N N 56 
PXW C28 S1   SING N N 57 
PXW N37 H9   SING N N 58 
PXW S1  H24  SING N N 59 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PXW SMILES           ACDLabs              12.01 "S/C(N)=[N+]1\C2CC(NC(=O)c3ccc(cc3Cl)c3cccc(c3)C3(C#N)CC3)C1CC2"                                                                                                                                      
PXW InChI            InChI                1.03  "InChI=1S/C24H23ClN4OS/c25-19-11-15(14-2-1-3-16(10-14)24(13-26)8-9-24)4-6-18(19)22(30)28-20-12-17-5-7-21(20)29(17)23(27)31/h1-4,6,10-11,17,20-21H,5,7-9,12H2,(H3,27,28,30,31)/p+1/t17-,20+,21+/m0/s1" 
PXW InChIKey         InChI                1.03  QYJCMFNKFUMQPQ-IOMROCGXSA-O                                                                                                                                                                           
PXW SMILES_CANONICAL CACTVS               3.385 "N\C(S)=[N+]/1[C@H]2CC[C@@H]/1[C@@H](C2)NC(=O)c3ccc(cc3Cl)c4cccc(c4)C5(CC5)C#N"                                                                                                                       
PXW SMILES           CACTVS               3.385 "NC(S)=[N+]1[CH]2CC[CH]1[CH](C2)NC(=O)c3ccc(cc3Cl)c4cccc(c4)C5(CC5)C#N"                                                                                                                               
PXW SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)C2(CC2)C#N)c3ccc(c(c3)Cl)C(=O)N[C@@H]4C[C@@H]5CC[C@H]4[N+]5=C(N)S"                                                                                                                        
PXW SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)C2(CC2)C#N)c3ccc(c(c3)Cl)C(=O)NC4CC5CCC4[N+]5=C(N)S"                                                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
PXW "SYSTEMATIC NAME" ACDLabs              12.01 "(1R,2R,4S,7E)-7-[amino(sulfanyl)methylidene]-2-{[(1P)-3-chloro-3'-(1-cyanocyclopropyl)[1,1'-biphenyl]-4-carbonyl]amino}-7-azabicyclo[2.2.1]heptan-7-ium" 
PXW "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(1~{R},2~{R},4~{S})-7-[azanyl(sulfanyl)methylidene]-7-azoniabicyclo[2.2.1]heptan-2-yl]-2-chloranyl-4-[3-(1-cyanocyclopropyl)phenyl]benzamide"      
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
PXW "Create component" 2022-05-31 RCSB 
PXW "Initial release"  2023-02-01 RCSB 
# 
