data_Q56
#

_chem_comp.id                                   Q56
_chem_comp.name                                 "N~2~-{[(naphthalen-2-yl)methoxy]carbonyl}-N-{(2S)-1-oxo-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-leucinamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C25 H33 N3 O8 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2022-01-19
_chem_comp.pdbx_modified_date                   2022-04-29
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       535.610
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    Q56
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7TIX
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Q56  C16  C1   C  0  1  N  N  N   6.408   1.311  25.592   0.774   1.067  -3.282  C16  Q56   1  
Q56  C12  C2   C  0  1  N  N  S   7.900   3.100  19.837  -4.103  -1.782  -0.705  C12  Q56   2  
Q56  C14  C3   C  0  1  N  N  S   7.448   0.197  23.525  -0.226   0.609  -1.039  C14  Q56   3  
Q56  C15  C4   C  0  1  N  N  N   7.635   1.185  24.672  -0.289   0.265  -2.528  C15  Q56   4  
Q56  C17  C5   C  0  1  N  N  N   5.556   0.053  25.724   0.796   0.633  -4.749  C17  Q56   5  
Q56  C18  C6   C  0  1  N  N  N   6.855   1.777  26.974   0.444   2.559  -3.197  C18  Q56   6  
Q56  C22  C7   C  0  1  N  N  N   8.947  -4.286  22.803   4.448   1.456  -0.219  C22  Q56   7  
Q56  C23  C8   C  0  1  Y  N  N  10.125  -4.086  21.840   5.673   0.834   0.401  C23  Q56   8  
Q56  C25  C9   C  0  1  Y  N  N  11.997  -2.793  21.020   7.633  -0.523   0.213  C25  Q56   9  
Q56  C26  C10  C  0  1  Y  N  N  12.804  -1.659  21.082   8.501  -1.330  -0.543  C26  Q56  10  
Q56  C27  C11  C  0  1  Y  N  N  13.864  -1.504  20.188   9.599  -1.875   0.047  C27  Q56  11  
Q56  C29  C12  C  0  1  Y  N  N  13.307  -3.616  19.160   9.060  -0.872   2.157  C29  Q56  12  
Q56  C10  C13  C  0  1  N  N  N   7.767  -1.435  17.725  -5.714   2.665   0.909  C10  Q56  13  
Q56  C2   C14  C  0  1  N  N  N   8.220   0.712  22.299  -1.350  -0.086  -0.315  C2   Q56  14  
Q56  C20  C15  C  0  1  N  N  N   8.072  -2.157  23.157   2.143   0.958  -0.585  C20  Q56  15  
Q56  C24  C16  C  0  1  Y  N  N  10.938  -2.949  21.906   6.490   0.058  -0.362  C24  Q56  16  
Q56  C28  C17  C  0  1  Y  N  N  14.120  -2.482  19.228   9.877  -1.647   1.394  C28  Q56  17  
Q56  C30  C18  C  0  1  Y  N  N  12.247  -3.769  20.055   7.917  -0.290   1.582  C30  Q56  18  
Q56  C31  C19  C  0  1  Y  N  N  11.443  -4.902  19.990   7.055   0.525   2.335  C31  Q56  19  
Q56  C32  C20  C  0  1  Y  N  N  10.387  -5.062  20.884   5.954   1.067   1.745  C32  Q56  20  
Q56  C4   C21  C  0  1  N  N  S   8.214   1.614  20.045  -3.723  -0.506   0.049  C4   Q56  21  
Q56  C5   C22  C  0  1  N  N  N   7.717   0.790  18.848  -4.935   0.424   0.121  C5   Q56  22  
Q56  C6   C23  C  0  1  N  N  S   8.202  -0.700  18.939  -4.572   1.673   0.928  C6   Q56  23  
Q56  C7   C24  C  0  1  N  N  N   9.705  -0.757  18.992  -4.401   1.320   2.423  C7   Q56  24  
Q56  C8   C25  C  0  1  N  N  N  10.034  -1.999  18.097  -4.983   2.575   3.112  C8   Q56  25  
Q56  N19  N1   N  0  1  N  N  N   7.988  -1.083  23.949   1.057   0.165  -0.488  N19  Q56  26  
Q56  N3   N2   N  0  1  N  N  N   7.535   1.135  21.234  -2.629   0.169  -0.655  N3   Q56  27  
Q56  N9   N3   N  0  1  N  N  N   8.774  -2.161  17.236  -5.925   3.150   2.145  N9   Q56  28  
Q56  O1   O1   O  0  1  N  N  N   9.426   0.752  22.291  -1.104  -0.874   0.573  O1   Q56  29  
Q56  O11  O2   O  0  1  N  N  N   6.669  -1.379  17.255  -6.343   2.981  -0.079  O11  Q56  30  
Q56  O13  O3   O  0  1  N  N  N   8.470   3.717  18.968  -2.950  -2.614  -0.847  O13  Q56  31  
Q56  O21  O4   O  0  1  N  N  N   8.751  -3.180  23.655   3.322   0.550  -0.079  O21  Q56  32  
Q56  O33  O5   O  0  1  N  N  N   7.579  -2.190  22.054   2.057   2.042  -1.128  O33  Q56  33  
Q56  H1   H1   H  0  1  N  N  N   5.766   2.099  25.172   1.752   0.885  -2.835  H1   Q56  34  
Q56  H2   H2   H  0  1  N  N  N   6.916   3.413  20.215  -4.486  -1.521  -1.691  H2   Q56  35  
Q56  H3   H3   H  0  1  N  N  N   6.379   0.109  23.279  -0.323   1.687  -0.910  H3   Q56  36  
Q56  H4   H4   H  0  1  N  N  N   8.490   0.853  25.279  -1.276   0.515  -2.917  H4   Q56  37  
Q56  H5   H5   H  0  1  N  N  N   7.851   2.175  24.245  -0.103  -0.800  -2.663  H5   Q56  38  
Q56  H6   H6   H  0  1  N  N  N   4.711   0.251  26.400   1.554   1.204  -5.286  H6   Q56  39  
Q56  H7   H7   H  0  1  N  N  N   5.174  -0.236  24.734   1.032  -0.430  -4.810  H7   Q56  40  
Q56  H8   H8   H  0  1  N  N  N   6.169  -0.764  26.133  -0.181   0.814  -5.196  H8   Q56  41  
Q56  H9   H9   H  0  1  N  N  N   5.978   1.867  27.632  -0.533   2.740  -3.644  H9   Q56  42  
Q56  H10  H10  H  0  1  N  N  N   7.558   1.045  27.398   0.428   2.868  -2.151  H10  Q56  43  
Q56  H11  H11  H  0  1  N  N  N   7.351   2.755  26.888   1.201   3.130  -3.734  H11  Q56  44  
Q56  H12  H12  H  0  1  N  N  N   8.032  -4.443  22.213   4.223   2.396   0.284  H12  Q56  45  
Q56  H13  H13  H  0  1  N  N  N   9.143  -5.176  23.420   4.633   1.645  -1.277  H13  Q56  46  
Q56  H14  H14  H  0  1  N  N  N  12.609  -0.898  21.823   8.297  -1.516  -1.587  H14  Q56  47  
Q56  H15  H15  H  0  1  N  N  N  14.488  -0.624  20.240  10.264  -2.495  -0.536  H15  Q56  48  
Q56  H16  H16  H  0  1  N  N  N  13.499  -4.374  18.415   9.288  -0.704   3.199  H16  Q56  49  
Q56  H17  H17  H  0  1  N  N  N  10.742  -2.190  22.649   6.261  -0.111  -1.404  H17  Q56  50  
Q56  H18  H18  H  0  1  N  N  N  14.944  -2.363  18.540  10.755  -2.092   1.839  H18  Q56  51  
Q56  H19  H19  H  0  1  N  N  N  11.638  -5.659  19.245   7.263   0.717   3.377  H19  Q56  52  
Q56  H20  H20  H  0  1  N  N  N   9.770  -5.947  20.835   5.290   1.687   2.329  H20  Q56  53  
Q56  H21  H21  H  0  1  N  N  N   9.302   1.484  20.147  -3.401  -0.763   1.059  H21  Q56  54  
Q56  H22  H22  H  0  1  N  N  N   8.104   1.237  17.920  -5.229   0.716  -0.887  H22  Q56  55  
Q56  H23  H23  H  0  1  N  N  N   6.617   0.808  18.833  -5.762  -0.094   0.606  H23  Q56  56  
Q56  H24  H24  H  0  1  N  N  N   7.775  -1.164  19.840  -3.664   2.129   0.535  H24  Q56  57  
Q56  H25  H25  H  0  1  N  N  N  10.060  -0.905  20.022  -4.976   0.431   2.683  H25  Q56  58  
Q56  H26  H26  H  0  1  N  N  N  10.152   0.159  18.579  -3.349   1.189   2.675  H26  Q56  59  
Q56  H27  H27  H  0  1  N  N  N  10.207  -2.893  18.713  -5.505   2.295   4.027  H27  Q56  60  
Q56  H28  H28  H  0  1  N  N  N  10.918  -1.809  17.470  -4.188   3.286   3.334  H28  Q56  61  
Q56  H29  H29  H  0  1  N  N  N   8.317  -1.166  24.890   1.125  -0.700  -0.055  H29  Q56  62  
Q56  H30  H30  H  0  1  N  N  N   6.535   1.121  21.256  -2.826   0.800  -1.365  H30  Q56  63  
Q56  H31  H31  H  0  1  N  N  N   8.716  -2.734  16.418  -6.613   3.797   2.369  H31  Q56  64  
Q56  S1   S1   S  0  1  N  Y  N       ?       ?       ?  -5.381  -2.675   0.223  S1   Q56  65  
Q56  O2   O6   O  0  1  N  Y  N       ?       ?       ?  -5.776  -3.848  -0.475  O2   Q56  66  
Q56  O4   O7   O  0  1  N  Y  N       ?       ?       ?  -5.055  -2.719   1.605  O4   Q56  67  
Q56  O3   O8   O  0  1  N  Y  N       ?       ?       ?  -6.602  -1.769   0.154  O3   Q56  68  
Q56  H32  H32  H  0  1  N  N  N   8.167   4.617  18.968  -2.224  -2.200  -1.334  H32  Q56  69  
Q56  H33  H33  H  0  1  N  Y  N       ?       ?       ?  -7.378  -2.119   0.614  H33  Q56  70  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Q56  N9   C10  SING  N  N   1  
Q56  N9   C8   SING  N  N   2  
Q56  O11  C10  DOUB  N  N   3  
Q56  C10  C6   SING  N  N   4  
Q56  C8   C7   SING  N  N   5  
Q56  C5   C6   SING  N  N   6  
Q56  C5   C4   SING  N  N   7  
Q56  C6   C7   SING  N  N   8  
Q56  O13  C12  SING  N  N   9  
Q56  C29  C28  DOUB  Y  N  10  
Q56  C29  C30  SING  Y  N  11  
Q56  C28  C27  SING  Y  N  12  
Q56  C12  C4   SING  N  N  13  
Q56  C31  C30  DOUB  Y  N  14  
Q56  C31  C32  SING  Y  N  15  
Q56  C4   N3   SING  N  N  16  
Q56  C30  C25  SING  Y  N  17  
Q56  C27  C26  DOUB  Y  N  18  
Q56  C32  C23  DOUB  Y  N  19  
Q56  C25  C26  SING  Y  N  20  
Q56  C25  C24  DOUB  Y  N  21  
Q56  N3   C2   SING  N  N  22  
Q56  C23  C24  SING  Y  N  23  
Q56  C23  C22  SING  N  N  24  
Q56  O33  C20  DOUB  N  N  25  
Q56  O1   C2   DOUB  N  N  26  
Q56  C2   C14  SING  N  N  27  
Q56  C22  O21  SING  N  N  28  
Q56  C20  O21  SING  N  N  29  
Q56  C20  N19  SING  N  N  30  
Q56  C14  N19  SING  N  N  31  
Q56  C14  C15  SING  N  N  32  
Q56  C15  C16  SING  N  N  33  
Q56  C16  C17  SING  N  N  34  
Q56  C16  C18  SING  N  N  35  
Q56  C16  H1   SING  N  N  36  
Q56  C12  H2   SING  N  N  37  
Q56  C14  H3   SING  N  N  38  
Q56  C15  H4   SING  N  N  39  
Q56  C15  H5   SING  N  N  40  
Q56  C17  H6   SING  N  N  41  
Q56  C17  H7   SING  N  N  42  
Q56  C17  H8   SING  N  N  43  
Q56  C18  H9   SING  N  N  44  
Q56  C18  H10  SING  N  N  45  
Q56  C18  H11  SING  N  N  46  
Q56  C22  H12  SING  N  N  47  
Q56  C22  H13  SING  N  N  48  
Q56  C26  H14  SING  N  N  49  
Q56  C27  H15  SING  N  N  50  
Q56  C29  H16  SING  N  N  51  
Q56  C24  H17  SING  N  N  52  
Q56  C28  H18  SING  N  N  53  
Q56  C31  H19  SING  N  N  54  
Q56  C32  H20  SING  N  N  55  
Q56  C4   H21  SING  N  N  56  
Q56  C5   H22  SING  N  N  57  
Q56  C5   H23  SING  N  N  58  
Q56  C6   H24  SING  N  N  59  
Q56  C7   H25  SING  N  N  60  
Q56  C7   H26  SING  N  N  61  
Q56  C8   H27  SING  N  N  62  
Q56  C8   H28  SING  N  N  63  
Q56  N19  H29  SING  N  N  64  
Q56  N3   H30  SING  N  N  65  
Q56  N9   H31  SING  N  N  66  
Q56  C12  S1   SING  N  N  67  
Q56  S1   O2   DOUB  N  N  68  
Q56  S1   O4   DOUB  N  N  69  
Q56  S1   O3   SING  N  N  70  
Q56  O13  H32  SING  N  N  71  
Q56  O3   H33  SING  N  N  72  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Q56  SMILES            ACDLabs               12.01  "CC(C)CC(NC(=O)OCc1cc2ccccc2cc1)C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O"  
Q56  InChI             InChI                 1.03   "InChI=1S/C25H33N3O8S/c1-15(2)11-20(28-25(32)36-14-16-7-8-17-5-3-4-6-18(17)12-16)23(30)27-21(24(31)37(33,34)35)13-19-9-10-26-22(19)29/h3-8,12,15,19-21,24,31H,9-11,13-14H2,1-2H3,(H,26,29)(H,27,30)(H,28,32)(H,33,34,35)/t19-,20-,21-,24-/m0/s1"  
Q56  InChIKey          InChI                 1.03   KLDKNBLMZUYYLD-CIEVZJJWSA-N  
Q56  SMILES_CANONICAL  CACTVS                3.385  "CC(C)C[C@H](NC(=O)OCc1ccc2ccccc2c1)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@@H](O)[S](O)(=O)=O"  
Q56  SMILES            CACTVS                3.385  "CC(C)C[CH](NC(=O)OCc1ccc2ccccc2c1)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)[S](O)(=O)=O"  
Q56  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)[C@H](O)S(=O)(=O)O)NC(=O)OCc2ccc3ccccc3c2"  
Q56  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCc2ccc3ccccc3c2"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
Q56  "SYSTEMATIC NAME"  ACDLabs               12.01  "(1S,2S)-1-hydroxy-2-[(N-{[(naphthalen-2-yl)methoxy]carbonyl}-L-leucyl)amino]-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid"  
Q56  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(1~{R},2~{S})-2-[[(2~{S})-4-methyl-2-(naphthalen-2-ylmethoxycarbonylamino)pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Q56  "Create component"  2022-01-19  RCSB  
Q56  "Initial release"   2022-05-04  RCSB  
##
