data_Q81
#

_chem_comp.id                                   Q81
_chem_comp.name                                 "1,3-dideoxy-1-({2,6-dioxo-5-[(E)-(2-oxopropylidene)amino]-1,2,3,6-tetrahydropyrimidin-4-yl}amino)-D-erythro-pentitol"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C12 H18 N4 O6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-10-02
_chem_comp.pdbx_modified_date                   2020-02-14
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       314.295
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    Q81
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6PUL
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Q81  N1   N1   N  0  1  N  N  N  -43.374  40.034  189.154   0.045  -0.226  -0.064  N1   Q81   1  
Q81  C2   C1   C  0  1  N  N  N  -46.631  39.877  191.405  -3.252   1.771   0.346  C2   Q81   2  
Q81  O2   O1   O  0  1  N  N  N  -40.793  42.692  187.892   5.033   1.084  -0.968  O2   Q81   3  
Q81  C3   C2   C  0  1  N  N  N  -45.066  41.264  190.386  -2.356  -0.271  -0.203  C3   Q81   4  
Q81  C4   C3   C  0  1  N  N  N  -43.922  41.226  189.569  -1.120  -0.929  -0.051  C4   Q81   5  
Q81  O4   O2   O  0  1  N  N  N  -43.408  44.682  189.079  -2.187  -4.200   0.277  O4   Q81   6  
Q81  C5   C4   C  0  1  N  N  N  -42.314  40.011  188.146   1.324  -0.923   0.090  C5   Q81   7  
Q81  C6   C5   C  0  1  N  N  R  -40.914  39.697  188.661   2.467   0.092   0.040  C6   Q81   8  
Q81  N    N2   N  0  1  N  N  N  -45.537  40.001  190.741  -2.417   1.059  -0.370  N    Q81   9  
Q81  C    C6   C  0  1  N  N  N  -46.266  37.440  190.894  -4.205   3.997   1.068  C    Q81  10  
Q81  C1   C7   C  0  1  N  N  N  -46.984  38.479  191.710  -3.245   3.177   0.245  C1   Q81  11  
Q81  C10  C8   C  0  1  N  N  N  -43.924  43.634  189.454  -2.250  -2.995   0.125  C10  Q81  12  
Q81  C11  C9   C  0  1  N  N  N  -45.722  42.519  190.711  -3.577  -1.090  -0.180  C11  Q81  13  
Q81  C7   C10  C  0  1  N  N  N  -40.359  40.863  189.469   3.803  -0.637   0.201  C7   Q81  14  
Q81  C8   C11  C  0  1  N  N  S  -39.757  41.991  188.639   4.937   0.388   0.276  C8   Q81  15  
Q81  C9   C12  C  0  1  N  N  N  -38.689  41.459  187.706   6.257  -0.332   0.561  C9   Q81  16  
Q81  N2   N3   N  0  1  N  N  N  -43.381  42.407  189.156  -1.111  -2.286   0.111  N2   Q81  17  
Q81  N3   N4   N  0  1  N  N  N  -45.077  43.625  190.198  -3.457  -2.423  -0.010  N3   Q81  18  
Q81  O1   O3   O  0  1  N  N  N  -40.947  38.490  189.439   2.445   0.774  -1.215  O1   Q81  19  
Q81  O3   O4   O  0  1  N  N  N  -37.918  42.504  187.142   7.295   0.632   0.747  O3   Q81  20  
Q81  O5   O5   O  0  1  N  N  N  -46.781  42.657  191.315  -4.672  -0.576  -0.312  O5   Q81  21  
Q81  H1   H1   H  0  1  N  N  N  -44.126  39.485  188.790   0.028   0.738  -0.179  H1   Q81  22  
Q81  H2   H2   H  0  1  N  N  N  -47.235  40.719  191.711  -3.945   1.281   1.013  H2   Q81  23  
Q81  H4   H4   H  0  1  N  N  N  -41.452  43.018  188.493   5.216   0.511  -1.726  H4   Q81  24  
Q81  H5   H5   H  0  1  N  N  N  -42.283  41.001  187.667   1.341  -1.443   1.048  H5   Q81  25  
Q81  H6   H6   H  0  1  N  N  N  -42.577  39.249  187.397   1.443  -1.645  -0.717  H6   Q81  26  
Q81  H7   H7   H  0  1  N  N  N  -40.259  39.546  187.790   2.348   0.814   0.848  H7   Q81  27  
Q81  H8   H8   H  0  1  N  N  N  -46.781  36.473  190.995  -4.820   3.333   1.676  H8   Q81  28  
Q81  H9   H9   H  0  1  N  N  N  -46.260  37.744  189.837  -3.645   4.669   1.718  H9   Q81  29  
Q81  H10  H10  H  0  1  N  N  N  -45.231  37.343  191.253  -4.845   4.581   0.406  H10  Q81  30  
Q81  H13  H13  H  0  1  N  N  N  -39.576  40.474  190.136   3.787  -1.228   1.116  H13  Q81  31  
Q81  H14  H14  H  0  1  N  N  N  -41.179  41.282  190.071   3.964  -1.294  -0.654  H14  Q81  32  
Q81  H15  H15  H  0  1  N  N  N  -39.280  42.701  189.331   4.731   1.099   1.076  H15  Q81  33  
Q81  H16  H16  H  0  1  N  N  N  -39.173  40.895  186.895   6.154  -0.934   1.464  H16  Q81  34  
Q81  H17  H17  H  0  1  N  N  N  -38.023  40.790  188.271   6.507  -0.979  -0.280  H17  Q81  35  
Q81  H18  H18  H  0  1  N  N  N  -45.493  44.514  190.388  -4.253  -2.977   0.007  H18  Q81  36  
Q81  H19  H19  H  0  1  N  N  N  -40.074  38.295  189.759   2.546   0.191  -1.981  H19  Q81  37  
Q81  H20  H20  H  0  1  N  N  N  -37.260  42.136  186.564   8.162   0.246   0.932  H20  Q81  38  
Q81  O6   O6   O  0  1  N  N  N  -48.116  37.916  192.373  -2.465   3.729  -0.506  O6   Q81  39  
Q81  H3   H3   H  0  1  N  N  N  -42.545  42.379  188.608  -0.263  -2.746   0.212  H3   Q81  40  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Q81  O3   C9   SING  N  N   1  
Q81  C9   C8   SING  N  N   2  
Q81  O2   C8   SING  N  N   3  
Q81  C5   C6   SING  N  N   4  
Q81  C5   N1   SING  N  N   5  
Q81  C8   C7   SING  N  N   6  
Q81  C6   O1   SING  N  N   7  
Q81  C6   C7   SING  N  N   8  
Q81  O4   C10  DOUB  N  N   9  
Q81  N1   C4   SING  N  N  10  
Q81  N2   C10  SING  N  N  11  
Q81  N2   C4   SING  N  N  12  
Q81  C10  N3   SING  N  N  13  
Q81  C4   C3   DOUB  N  N  14  
Q81  N3   C11  SING  N  N  15  
Q81  C3   C11  SING  N  N  16  
Q81  C3   N    SING  N  N  17  
Q81  C11  O5   DOUB  N  N  18  
Q81  N    C2   DOUB  N  N  19  
Q81  C    C1   SING  N  N  20  
Q81  C2   C1   SING  N  N  21  
Q81  N1   H1   SING  N  N  22  
Q81  C2   H2   SING  N  N  23  
Q81  O2   H4   SING  N  N  24  
Q81  C5   H5   SING  N  N  25  
Q81  C5   H6   SING  N  N  26  
Q81  C6   H7   SING  N  N  27  
Q81  C    H8   SING  N  N  28  
Q81  C    H9   SING  N  N  29  
Q81  C    H10  SING  N  N  30  
Q81  C7   H13  SING  N  N  31  
Q81  C7   H14  SING  N  N  32  
Q81  C8   H15  SING  N  N  33  
Q81  C9   H16  SING  N  N  34  
Q81  C9   H17  SING  N  N  35  
Q81  N3   H18  SING  N  N  36  
Q81  O1   H19  SING  N  N  37  
Q81  O3   H20  SING  N  N  38  
Q81  C1   O6   DOUB  N  N  39  
Q81  N2   H3   SING  N  N  40  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Q81  SMILES            ACDLabs               12.01  "N(C1=C(C(=O)NC(=O)N1)N=[C@H]C(C)=O)CC(O)CC(O)CO"  
Q81  InChI             InChI                 1.03   "InChI=1S/C12H18N4O6/c1-6(18)3-13-9-10(15-12(22)16-11(9)21)14-4-7(19)2-8(20)5-17/h3,7-8,17,19-20H,2,4-5H2,1H3,(H3,14,15,16,21,22)/b13-3+/t7-,8+/m1/s1"  
Q81  InChIKey          InChI                 1.03   QEEXVQRGCFOUFZ-NNBYJZMASA-N  
Q81  SMILES_CANONICAL  CACTVS                3.385  "CC(=O)C=NC1=C(NC[C@H](O)C[C@H](O)CO)NC(=O)NC1=O"  
Q81  SMILES            CACTVS                3.385  "CC(=O)C=NC1=C(NC[CH](O)C[CH](O)CO)NC(=O)NC1=O"  
Q81  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(=O)/C=N/C1=C(NC(=O)NC1=O)NC[C@@H](C[C@@H](CO)O)O"  
Q81  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(=O)C=NC1=C(NC(=O)NC1=O)NCC(CC(CO)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
Q81  "SYSTEMATIC NAME"  ACDLabs               12.01  "1,3-dideoxy-1-({2,6-dioxo-5-[(E)-(2-oxopropylidene)amino]-1,2,3,6-tetrahydropyrimidin-4-yl}amino)-D-erythro-pentitol"  
Q81  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "5-[(~{E})-2-oxidanylidenepropylideneamino]-6-[[(2~{R},4~{S})-2,4,5-tris(oxidanyl)pentyl]amino]-1~{H}-pyrimidine-2,4-dione"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Q81  "Create component"  2019-10-02  RCSB  
Q81  "Initial release"   2020-02-19  RCSB  
##
