data_R1L
# 
_chem_comp.id                                    R1L 
_chem_comp.name                                  "(2E)-2-{(3R)-3-[4-amino-3-(2-fluoro-4-phenoxyphenyl)-1H-pyrazolo[3,4-d]pyrimidin-1-yl]piperidine-1-carbonyl}-4-methyl-4-[4-(oxetan-3-yl)piperazin-1-yl]pent-2-enenitrile" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C36 H40 F N9 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         Rilzabrutinib 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2020-12-23 
_chem_comp.pdbx_modified_date                    2022-06-24 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        665.760 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     R1L 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7L5O 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
R1L C2  C1  C 0 1 Y N N 19.463 4.795  5.040  -5.800  -0.257 1.390  C2  R1L 1  
R1L C3  C2  C 0 1 Y N N 18.985 4.760  6.312  -6.912  0.488  1.730  C3  R1L 2  
R1L C4  C3  C 0 1 Y N N 18.811 5.960  6.982  -7.219  1.641  1.023  C4  R1L 3  
R1L C6  C4  C 0 1 Y N N 17.233 6.620  8.665  -9.399  2.308  0.543  C6  R1L 4  
R1L C7  C5  C 0 1 Y N N 17.130 6.883  10.011 -10.558 2.996  0.873  C7  R1L 5  
R1L C8  C6  C 0 1 Y N N 16.049 7.571  10.512 -11.657 2.934  0.038  C8  R1L 6  
R1L C11 C7  C 0 1 Y N N 16.221 7.012  7.803  -9.347  1.560  -0.625 C11 R1L 7  
R1L C12 C8  C 0 1 Y N N 19.138 7.165  6.363  -6.410  2.052  -0.029 C12 R1L 8  
R1L C15 C9  C 0 1 Y N N 20.310 5.973  3.019  -3.793  -0.645 -0.039 C15 R1L 9  
R1L C18 C10 C 0 1 Y N N 20.683 5.665  0.771  -2.385  -2.114 -1.110 C18 R1L 10 
R1L C24 C11 C 0 1 Y N N 19.715 5.464  1.787  -3.696  -1.604 -1.140 C24 R1L 11 
R1L C27 C12 C 0 1 N N N 24.201 6.237  1.573  -0.318  -2.267 1.766  C27 R1L 12 
R1L C31 C13 C 0 1 N N N 23.015 8.157  0.441  0.430   -0.435 0.242  C31 R1L 13 
R1L C32 C14 C 0 1 N N N 24.382 8.898  -1.458 2.867   -0.341 0.028  C32 R1L 14 
R1L C34 C15 C 0 1 N N N 25.648 9.190  -2.150 4.217   -0.440 0.619  C34 R1L 15 
R1L C35 C16 C 0 1 N N N 25.902 10.578 -2.386 4.678   0.569  1.525  C35 R1L 16 
R1L C37 C17 C 0 1 N N N 26.393 8.110  -2.508 5.015   -1.478 0.305  C37 R1L 17 
R1L C38 C18 C 0 1 N N N 27.714 8.038  -3.240 6.439   -1.510 0.797  C38 R1L 18 
R1L C39 C19 C 0 1 N N N 28.726 7.306  -2.345 6.451   -1.738 2.309  C39 R1L 19 
R1L C40 C20 C 0 1 N N N 27.463 7.067  -4.413 7.193   -2.647 0.104  C40 R1L 20 
R1L F1  F1  F 0 1 N N N 19.635 3.622  4.395  -5.501  -1.381 2.078  F1  R1L 21 
R1L O5  O1  O 0 1 N N N 18.337 5.929  8.260  -8.314  2.372  1.359  O5  R1L 22 
R1L C9  C21 C 0 1 Y N N 15.032 7.955  9.657  -11.603 2.188  -1.125 C9  R1L 23 
R1L C10 C22 C 0 1 Y N N 15.114 7.663  8.308  -10.449 1.502  -1.456 C10 R1L 24 
R1L C13 C23 C 0 1 Y N N 19.635 7.181  5.076  -5.297  1.314  -0.374 C13 R1L 25 
R1L C14 C24 C 0 1 Y N N 19.786 5.985  4.391  -4.987  0.150  0.330  C14 R1L 26 
R1L N16 N1  N 0 1 Y N N 21.501 6.400  2.705  -2.628  -0.624 0.565  N16 R1L 27 
R1L N17 N2  N 0 1 Y N N 21.757 6.251  1.362  -1.748  -1.508 -0.068 N17 R1L 28 
R1L N19 N3  N 0 1 Y N N 20.441 5.313  -0.476 -2.030  -3.017 -2.024 N19 R1L 29 
R1L C20 C25 C 0 1 Y N N 19.283 4.762  -0.749 -2.887  -3.423 -2.934 C20 R1L 30 
R1L N21 N4  N 0 1 Y N N 18.332 4.562  0.133  -4.129  -2.976 -2.995 N21 R1L 31 
R1L C22 C26 C 0 1 Y N N 18.490 4.891  1.415  -4.576  -2.071 -2.130 C22 R1L 32 
R1L N23 N5  N 0 1 N N N 17.494 4.696  2.312  -5.873  -1.603 -2.203 N23 R1L 33 
R1L C25 C27 C 0 1 N N R 23.001 6.634  0.693  -0.358  -1.746 0.328  C25 R1L 34 
R1L C28 C28 C 0 1 N N N 25.516 6.717  0.951  1.132   -2.547 2.169  C28 R1L 35 
R1L C29 C29 C 0 1 N N N 25.467 8.217  0.697  1.936   -1.245 2.104  C29 R1L 36 
R1L N30 N6  N 0 1 N N N 24.317 8.452  -0.191 1.784   -0.662 0.764  N30 R1L 37 
R1L O33 O2  O 0 1 N N N 23.358 9.063  -2.107 2.732   0.030  -1.122 O33 R1L 38 
R1L N36 N7  N 0 1 N N N 26.083 11.692 -2.556 5.044   1.369  2.243  N36 R1L 39 
R1L N41 N8  N 0 1 N N N 28.198 9.366  -3.727 7.092   -0.230 0.489  N41 R1L 40 
R1L C42 C30 C 0 1 N N N 28.795 10.424 -2.797 8.433   -0.166 1.087  C42 R1L 41 
R1L C43 C31 C 0 1 N N N 28.834 11.650 -3.475 9.046   1.209  0.811  C43 R1L 42 
R1L N44 N9  N 0 1 N N N 29.580 11.634 -4.813 9.108   1.433  -0.640 N44 R1L 43 
R1L C45 C32 C 0 1 N N N 28.951 10.625 -5.719 7.767   1.368  -1.238 C45 R1L 44 
R1L C46 C33 C 0 1 N N N 28.728 9.306  -5.124 7.154   -0.007 -0.962 C46 R1L 45 
R1L C47 C34 C 0 1 N N N 29.675 12.908 -5.347 9.761   2.712  -0.948 C47 R1L 46 
R1L C48 C35 C 0 1 N N N 30.950 13.655 -4.917 11.251  2.759  -0.560 C48 R1L 47 
R1L O49 O3  O 0 1 N N N 31.476 13.394 -6.236 11.446  3.401  -1.836 O49 R1L 48 
R1L C50 C36 C 0 1 N N N 30.230 12.915 -6.783 10.252  2.825  -2.404 C50 R1L 49 
R1L H1  H1  H 0 1 N N N 18.747 3.820  6.788  -7.544  0.171  2.547  H1  R1L 50 
R1L H2  H2  H 0 1 N N N 17.906 6.546  10.682 -10.601 3.578  1.781  H2  R1L 51 
R1L H3  H3  H 0 1 N N N 15.995 7.809  11.564 -12.560 3.469  0.295  H3  R1L 52 
R1L H4  H4  H 0 1 N N N 16.298 6.810  6.745  -8.446  1.025  -0.884 H4  R1L 53 
R1L H5  H5  H 0 1 N N N 19.001 8.095  6.895  -6.652  2.950  -0.577 H5  R1L 54 
R1L H6  H6  H 0 1 N N N 24.085 6.693  2.567  -0.743  -1.519 2.435  H6  R1L 55 
R1L H7  H7  H 0 1 N N N 24.228 5.142  1.673  -0.898  -3.188 1.835  H7  R1L 56 
R1L H8  H8  H 0 1 N N N 22.919 8.703  1.391  0.489   -0.112 -0.797 H8  R1L 57 
R1L H9  H9  H 0 1 N N N 22.191 8.441  -0.230 -0.069  0.331  0.836  H9  R1L 58 
R1L H10 H10 H 0 1 N N N 25.976 7.155  -2.225 4.634   -2.289 -0.299 H10 R1L 59 
R1L H11 H11 H 0 1 N N N 28.966 7.932  -1.473 5.967   -2.687 2.538  H11 R1L 60 
R1L H12 H12 H 0 1 N N N 28.293 6.354  -2.004 7.482   -1.760 2.665  H12 R1L 61 
R1L H13 H13 H 0 1 N N N 29.644 7.107  -2.917 5.915   -0.928 2.803  H13 R1L 62 
R1L H14 H14 H 0 1 N N N 27.109 6.102  -4.021 7.184   -2.485 -0.974 H14 R1L 63 
R1L H15 H15 H 0 1 N N N 26.702 7.492  -5.084 8.223   -2.670 0.459  H15 R1L 64 
R1L H16 H16 H 0 1 N N N 28.399 6.915  -4.970 6.708   -3.596 0.332  H16 R1L 65 
R1L H17 H17 H 0 1 N N N 14.173 8.483  10.043 -12.464 2.141  -1.776 H17 R1L 66 
R1L H18 H18 H 0 1 N N N 14.308 7.946  7.647  -10.409 0.920  -2.365 H18 R1L 67 
R1L H19 H19 H 0 1 N N N 19.904 8.116  4.607  -4.669  1.634  -1.192 H19 R1L 68 
R1L H20 H20 H 0 1 N N N 19.100 4.452  -1.767 -2.564  -4.156 -3.659 H20 R1L 69 
R1L H21 H21 H 0 1 N N N 16.703 4.295  1.850  -6.453  -1.890 -2.926 H21 R1L 70 
R1L H22 H22 H 0 1 N N N 17.809 4.076  3.031  -6.205  -0.987 -1.530 H22 R1L 71 
R1L H23 H23 H 0 1 N N N 23.081 6.114  -0.273 0.090   -2.484 -0.339 H23 R1L 72 
R1L H24 H24 H 0 1 N N N 25.678 6.193  -0.003 1.157   -2.941 3.185  H24 R1L 73 
R1L H25 H25 H 0 1 N N N 26.345 6.493  1.638  1.565   -3.278 1.485  H25 R1L 74 
R1L H26 H26 H 0 1 N N N 26.396 8.551  0.212  1.561   -0.546 2.851  H26 R1L 75 
R1L H27 H27 H 0 1 N N N 25.333 8.759  1.645  2.988   -1.456 2.296  H27 R1L 76 
R1L H29 H29 H 0 1 N N N 28.171 10.519 -1.896 8.359   -0.322 2.163  H29 R1L 77 
R1L H30 H30 H 0 1 N N N 29.814 10.129 -2.507 9.064   -0.940 0.649  H30 R1L 78 
R1L H31 H31 H 0 1 N N N 29.325 12.385 -2.821 8.430   1.981  1.272  H31 R1L 79 
R1L H32 H32 H 0 1 N N N 27.798 11.965 -3.667 10.052  1.249  1.229  H32 R1L 80 
R1L H34 H34 H 0 1 N N N 29.606 10.498 -6.593 7.136   2.142  -0.801 H34 R1L 81 
R1L H35 H35 H 0 1 N N N 27.978 11.020 -6.045 7.841   1.524  -2.314 H35 R1L 82 
R1L H36 H36 H 0 1 N N N 28.005 8.760  -5.748 7.771   -0.779 -1.423 H36 R1L 83 
R1L H37 H37 H 0 1 N N N 29.685 8.763  -5.111 6.148   -0.047 -1.380 H37 R1L 84 
R1L H38 H38 H 0 1 N N N 28.771 13.526 -5.243 9.189   3.575  -0.606 H38 R1L 85 
R1L H39 H39 H 0 1 N N N 31.507 13.176 -4.098 11.464  3.402  0.294  H39 R1L 86 
R1L H40 H40 H 0 1 N N N 30.801 14.720 -4.686 11.718  1.778  -0.482 H40 R1L 87 
R1L H41 H41 H 0 1 N N N 29.729 13.618 -7.465 10.415  1.863  -2.890 H41 R1L 88 
R1L H42 H42 H 0 1 N N N 30.288 11.924 -7.256 9.674   3.520  -3.012 H42 R1L 89 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
R1L C50 O49 SING N N 1  
R1L C50 C47 SING N N 2  
R1L O49 C48 SING N N 3  
R1L C45 C46 SING N N 4  
R1L C45 N44 SING N N 5  
R1L C47 C48 SING N N 6  
R1L C47 N44 SING N N 7  
R1L C46 N41 SING N N 8  
R1L N44 C43 SING N N 9  
R1L C40 C38 SING N N 10 
R1L N41 C38 SING N N 11 
R1L N41 C42 SING N N 12 
R1L C43 C42 SING N N 13 
R1L C38 C37 SING N N 14 
R1L C38 C39 SING N N 15 
R1L N36 C35 TRIP N N 16 
R1L C37 C34 DOUB N E 17 
R1L C35 C34 SING N N 18 
R1L C34 C32 SING N N 19 
R1L O33 C32 DOUB N N 20 
R1L C32 N30 SING N N 21 
R1L C20 N19 DOUB Y N 22 
R1L C20 N21 SING Y N 23 
R1L N19 C18 SING Y N 24 
R1L N30 C31 SING N N 25 
R1L N30 C29 SING N N 26 
R1L N21 C22 DOUB Y N 27 
R1L C31 C25 SING N N 28 
R1L C25 N17 SING N N 29 
R1L C25 C27 SING N N 30 
R1L C29 C28 SING N N 31 
R1L C18 N17 SING Y N 32 
R1L C18 C24 DOUB Y N 33 
R1L C28 C27 SING N N 34 
R1L N17 N16 SING Y N 35 
R1L C22 C24 SING Y N 36 
R1L C22 N23 SING N N 37 
R1L C24 C15 SING Y N 38 
R1L N16 C15 DOUB Y N 39 
R1L C15 C14 SING N N 40 
R1L C14 C2  DOUB Y N 41 
R1L C14 C13 SING Y N 42 
R1L F1  C2  SING N N 43 
R1L C2  C3  SING Y N 44 
R1L C13 C12 DOUB Y N 45 
R1L C3  C4  DOUB Y N 46 
R1L C12 C4  SING Y N 47 
R1L C4  O5  SING N N 48 
R1L C11 C10 DOUB Y N 49 
R1L C11 C6  SING Y N 50 
R1L O5  C6  SING N N 51 
R1L C10 C9  SING Y N 52 
R1L C6  C7  DOUB Y N 53 
R1L C9  C8  DOUB Y N 54 
R1L C7  C8  SING Y N 55 
R1L C3  H1  SING N N 56 
R1L C7  H2  SING N N 57 
R1L C8  H3  SING N N 58 
R1L C11 H4  SING N N 59 
R1L C12 H5  SING N N 60 
R1L C27 H6  SING N N 61 
R1L C27 H7  SING N N 62 
R1L C31 H8  SING N N 63 
R1L C31 H9  SING N N 64 
R1L C37 H10 SING N N 65 
R1L C39 H11 SING N N 66 
R1L C39 H12 SING N N 67 
R1L C39 H13 SING N N 68 
R1L C40 H14 SING N N 69 
R1L C40 H15 SING N N 70 
R1L C40 H16 SING N N 71 
R1L C9  H17 SING N N 72 
R1L C10 H18 SING N N 73 
R1L C13 H19 SING N N 74 
R1L C20 H20 SING N N 75 
R1L N23 H21 SING N N 76 
R1L N23 H22 SING N N 77 
R1L C25 H23 SING N N 78 
R1L C28 H24 SING N N 79 
R1L C28 H25 SING N N 80 
R1L C29 H26 SING N N 81 
R1L C29 H27 SING N N 82 
R1L C42 H29 SING N N 83 
R1L C42 H30 SING N N 84 
R1L C43 H31 SING N N 85 
R1L C43 H32 SING N N 86 
R1L C45 H34 SING N N 87 
R1L C45 H35 SING N N 88 
R1L C46 H36 SING N N 89 
R1L C46 H37 SING N N 90 
R1L C47 H38 SING N N 91 
R1L C48 H39 SING N N 92 
R1L C48 H40 SING N N 93 
R1L C50 H41 SING N N 94 
R1L C50 H42 SING N N 95 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
R1L SMILES           ACDLabs              12.01 "c2(cc(Oc1ccccc1)ccc2c3c7c(n(n3)C4CCCN(C4)C(C(C#N)=[C@H]C(C)(C)N5CCN(CC5)C6COC6)=O)ncnc7N)F"                                                                                                                                                                              
R1L InChI            InChI                1.03  "InChI=1S/C36H40FN9O3/c1-36(2,45-15-13-43(14-16-45)26-21-48-22-26)18-24(19-38)35(47)44-12-6-7-25(20-44)46-34-31(33(39)40-23-41-34)32(42-46)29-11-10-28(17-30(29)37)49-27-8-4-3-5-9-27/h3-5,8-11,17-18,23,25-26H,6-7,12-16,20-22H2,1-2H3,(H2,39,40,41)/b24-18+/t25-/m1/s1" 
R1L InChIKey         InChI                1.03  LCFFREMLXLZNHE-GBOLQPHISA-N                                                                                                                                                                                                                                               
R1L SMILES_CANONICAL CACTVS               3.385 "CC(C)(\C=C(C#N)\C(=O)N1CCC[C@H](C1)n2nc(c3ccc(Oc4ccccc4)cc3F)c5c(N)ncnc25)N6CCN(CC6)C7COC7"                                                                                                                                                                              
R1L SMILES           CACTVS               3.385 "CC(C)(C=C(C#N)C(=O)N1CCC[CH](C1)n2nc(c3ccc(Oc4ccccc4)cc3F)c5c(N)ncnc25)N6CCN(CC6)C7COC7"                                                                                                                                                                                 
R1L SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(/C=C(\C#N)/C(=O)N1CCC[C@H](C1)n2c3c(c(n2)c4ccc(cc4F)Oc5ccccc5)c(ncn3)N)N6CCN(CC6)C7COC7"                                                                                                                                                                           
R1L SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)(C=C(C#N)C(=O)N1CCCC(C1)n2c3c(c(n2)c4ccc(cc4F)Oc5ccccc5)c(ncn3)N)N6CCN(CC6)C7COC7"                                                                                                                                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
R1L "SYSTEMATIC NAME" ACDLabs              12.01 "(2E)-2-{(3R)-3-[4-amino-3-(2-fluoro-4-phenoxyphenyl)-1H-pyrazolo[3,4-d]pyrimidin-1-yl]piperidine-1-carbonyl}-4-methyl-4-[4-(oxetan-3-yl)piperazin-1-yl]pent-2-enenitrile"        
R1L "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(~{E})-2-[(3~{R})-3-[4-azanyl-3-(2-fluoranyl-4-phenoxy-phenyl)pyrazolo[3,4-d]pyrimidin-1-yl]piperidin-1-yl]carbonyl-4-methyl-4-[4-(oxetan-3-yl)piperazin-1-yl]pent-2-enenitrile" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
R1L "Create component" 2020-12-23 RCSB 
R1L "Modify synonyms"  2021-03-01 PDBE 
R1L "Initial release"  2022-06-29 RCSB 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      R1L 
_pdbx_chem_comp_synonyms.name         Rilzabrutinib 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
