data_RBL
#

_chem_comp.id                                   RBL
_chem_comp.name                                 D-ribulose
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C5 H10 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2009-01-26
_chem_comp.pdbx_modified_date                   2020-06-24
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       150.130
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    RBL
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2ZYD
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RBL  C1   C2    C  0  1  N  N  N  -2.912  26.664  40.559   2.050   0.842   0.484  C2    RBL   1  
RBL  C2   C3    C  0  1  N  N  N  -2.044  27.561  39.692   1.307  -0.380   0.011  C3    RBL   2  
RBL  C3   C5    C  0  1  N  N  R  -1.065  26.940  38.723  -0.078  -0.669   0.532  C5    RBL   3  
RBL  O3   O13   O  0  1  N  N  N   0.216  27.570  38.857  -0.384  -2.050   0.331  O13   RBL   4  
RBL  C4   C6    C  0  1  N  N  R  -1.535  27.087  37.267  -1.095   0.193  -0.218  C6    RBL   5  
RBL  O4   O14   O  0  1  N  N  N  -2.944  27.348  37.162  -0.789   1.575  -0.017  O14   RBL   6  
RBL  C5   C7    C  0  1  N  N  N  -1.185  25.815  36.506  -2.500  -0.100   0.310  C7    RBL   7  
RBL  O5   O8    O  0  1  N  N  N  -1.347  26.050  35.110  -3.461   0.618  -0.467  O8    RBL   8  
RBL  O2   O4    O  0  1  N  N  N  -2.121  28.772  39.786   1.821  -1.128  -0.786  O4    RBL   9  
RBL  O1   O1    O  0  1  N  N  N  -3.838  27.438  41.333   3.331   0.896  -0.148  O1    RBL  10  
RBL  H11  H2    H  0  1  N  N  N  -3.475  25.976  39.911   1.481   1.736   0.228  H2    RBL  11  
RBL  H12  H2A   H  0  1  N  N  N  -2.261  26.104  41.247   2.181   0.793   1.565  H2A   RBL  12  
RBL  H3   H5    H  0  1  N  N  N  -0.997  25.869  38.964  -0.121  -0.438   1.596  H5    RBL  13  
RBL  HO3  HO13  H  0  0  N  N  N   0.592  27.709  37.996  -0.364  -2.326  -0.596  HO13  RBL  14  
RBL  H4   H6    H  0  1  N  N  N  -1.019  27.956  36.833  -1.052  -0.037  -1.283  H6    RBL  15  
RBL  HO4  HO14  H  0  0  N  N  N  -3.322  27.406  38.032  -0.808   1.851   0.909  HO14  RBL  16  
RBL  H51  H7    H  0  1  N  N  N  -0.142  25.535  36.715  -2.700  -1.169   0.238  H7    RBL  17  
RBL  H52  H7A   H  0  1  N  N  N  -1.848  24.997  36.824  -2.569   0.214   1.352  H7A   RBL  18  
RBL  HO5  HO8   H  0  1  N  N  N  -1.383  26.985  34.948  -4.376   0.479  -0.188  HO8   RBL  19  
RBL  HO1  HO1   H  0  1  N  N  N  -3.468  27.609  42.191   3.865   1.659   0.111  HO1   RBL  20  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RBL  C1  C2   SING  N  N   1  
RBL  C1  O1   SING  N  N   2  
RBL  C2  C3   SING  N  N   3  
RBL  C2  O2   DOUB  N  N   4  
RBL  C3  O3   SING  N  N   5  
RBL  C3  C4   SING  N  N   6  
RBL  C4  O4   SING  N  N   7  
RBL  C4  C5   SING  N  N   8  
RBL  C5  O5   SING  N  N   9  
RBL  C1  H11  SING  N  N  10  
RBL  C1  H12  SING  N  N  11  
RBL  C3  H3   SING  N  N  12  
RBL  O3  HO3  SING  N  N  13  
RBL  C4  H4   SING  N  N  14  
RBL  O4  HO4  SING  N  N  15  
RBL  C5  H51  SING  N  N  16  
RBL  C5  H52  SING  N  N  17  
RBL  O5  HO5  SING  N  N  18  
RBL  O1  HO1  SING  N  N  19  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RBL  SMILES            ACDLabs               10.04  "O=C(CO)C(O)C(O)CO"  
RBL  SMILES_CANONICAL  CACTVS                3.341  "OC[C@@H](O)[C@@H](O)C(=O)CO"  
RBL  SMILES            CACTVS                3.341  "OC[CH](O)[CH](O)C(=O)CO"  
RBL  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C([C@H]([C@H](C(=O)CO)O)O)O"  
RBL  SMILES            "OpenEye OEToolkits"  1.5.0  "C(C(C(C(=O)CO)O)O)O"  
RBL  InChI             InChI                 1.03   "InChI=1S/C5H10O5/c6-1-3(8)5(10)4(9)2-7/h3,5-8,10H,1-2H2/t3-,5-/m1/s1"  
RBL  InChIKey          InChI                 1.03   ZAQJHHRNXZUBTE-NQXXGFSBSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
RBL  "SYSTEMATIC NAME"  ACDLabs               10.04  D-ribulose  
RBL  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(3R,4R)-1,3,4,5-tetrahydroxypentan-2-one"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RBL  "Create component"   2009-01-26  PDBJ  
RBL  "Modify descriptor"  2011-06-04  RCSB  
RBL  "Initial release"    2013-11-27  RCSB  
RBL  "Modify atom id"     2020-06-24  RCSB  
##
