data_RIB
#

_chem_comp.id                                   RIB
_chem_comp.name                                 alpha-D-ribofuranose
_chem_comp.type                                 "D-saccharide, alpha linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C5 H10 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "alpha-D-ribose; D-ribose; ribose"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-07-08
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       150.130
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    RIB
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1RKD
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  RIB  alpha-D-ribose  PDB  ?  
2  RIB  D-ribose        PDB  ?  
3  RIB  ribose          PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
RIB  O5   "O5'"   O  0  1  N  N  N  -22.638  14.721  43.822  -0.774  -0.372   3.102  O5   RIB   1  
RIB  C5   "C5'"   C  0  1  N  N  N  -21.843  14.285  44.944   0.124   0.364   2.271  C5   RIB   2  
RIB  C4   "C4'"   C  0  1  N  N  R  -20.428  14.057  44.341   0.184  -0.281   0.885  C4   RIB   3  
RIB  O4   "O4'"   O  0  1  N  N  N  -19.948  15.274  43.768  -1.110  -0.245   0.276  O4   RIB   4  
RIB  C3   "C3'"   C  0  1  N  N  S  -19.396  13.613  45.381   1.151   0.511  -0.020  C3   RIB   5  
RIB  O3   "O3'"   O  0  1  N  N  N  -19.441  12.184  45.500   2.419  -0.141  -0.116  O3   RIB   6  
RIB  C2   "C2'"   C  0  1  N  N  R  -18.089  14.222  44.874   0.412   0.487  -1.387  C2   RIB   7  
RIB  O2   "O2'"   O  0  1  N  N  N  -17.199  13.200  44.431   0.687  -0.720  -2.100  O2   RIB   8  
RIB  C1   "C1'"   C  0  1  N  N  S  -18.512  15.123  43.696  -1.065   0.539  -0.925  C1   RIB   9  
RIB  O1   "O1'"   O  0  1  N  Y  N  -18.241  14.414  42.529  -1.918  -0.028  -1.921  O1   RIB  10  
RIB  HO5  "HO5'"  H  0  1  N  Y  N  -23.502  14.860  44.190  -0.783   0.067   3.963  HO5  RIB  11  
RIB  H51  "H5'1"  H  0  1  N  N  N  -21.862  14.979  45.815  -0.225   1.392   2.178  H51  RIB  12  
RIB  H52  "H5'2"  H  0  1  N  N  N  -22.258  13.401  45.483   1.119   0.359   2.718  H52  RIB  13  
RIB  H4   "H4'"   H  0  1  N  N  N  -20.542  13.248  43.581   0.523  -1.313   0.973  H4   RIB  14  
RIB  H3   "H3'"   H  0  1  N  N  N  -19.564  13.959  46.427   1.269   1.533   0.339  H3   RIB  15  
RIB  HO3  "HO3'"  H  0  1  N  Y  N  -18.800  11.908  46.145   2.940   0.354  -0.763  HO3  RIB  16  
RIB  H2   "H2'"   H  0  1  N  N  N  -17.549  14.789  45.667   0.667   1.361  -1.987  H2   RIB  17  
RIB  HO2  "HO2'"  H  0  1  N  Y  N  -16.386  13.578  44.115   0.116  -0.720  -2.880  HO2  RIB  18  
RIB  H1   "H1'"   H  0  1  N  N  N  -17.989  16.107  43.720  -1.360   1.568  -0.717  H1   RIB  19  
RIB  HO1  "HO1'"  H  0  1  N  Y  N  -17.297  14.314  42.481  -2.816  -0.009  -1.563  HO1  RIB  20  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
RIB  O5  C5   SING  N  N   1  
RIB  O5  HO5  SING  N  N   2  
RIB  C5  C4   SING  N  N   3  
RIB  C5  H51  SING  N  N   4  
RIB  C5  H52  SING  N  N   5  
RIB  C4  O4   SING  N  N   6  
RIB  C4  C3   SING  N  N   7  
RIB  C4  H4   SING  N  N   8  
RIB  O4  C1   SING  N  N   9  
RIB  C3  O3   SING  N  N  10  
RIB  C3  C2   SING  N  N  11  
RIB  C3  H3   SING  N  N  12  
RIB  O3  HO3  SING  N  N  13  
RIB  C2  O2   SING  N  N  14  
RIB  C2  C1   SING  N  N  15  
RIB  C2  H2   SING  N  N  16  
RIB  O2  HO2  SING  N  N  17  
RIB  C1  O1   SING  N  N  18  
RIB  C1  H1   SING  N  N  19  
RIB  O1  HO1  SING  N  N  20  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
RIB  SMILES            ACDLabs               10.04  "OC1C(OC(O)C1O)CO"  
RIB  SMILES_CANONICAL  CACTVS                3.341  "OC[C@H]1O[C@H](O)[C@H](O)[C@@H]1O"  
RIB  SMILES            CACTVS                3.341  "OC[CH]1O[CH](O)[CH](O)[CH]1O"  
RIB  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C([C@@H]1[C@H]([C@H]([C@H](O1)O)O)O)O"  
RIB  SMILES            "OpenEye OEToolkits"  1.5.0  "C(C1C(C(C(O1)O)O)O)O"  
RIB  InChI             InChI                 1.03   "InChI=1S/C5H10O5/c6-1-2-3(7)4(8)5(9)10-2/h2-9H,1H2/t2-,3-,4-,5+/m1/s1"  
RIB  InChIKey          InChI                 1.03   HMFHBZSHGGEWLO-AIHAYLRMSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
RIB  "SYSTEMATIC NAME"                      ACDLabs               10.04  alpha-D-ribofuranose  
RIB  "SYSTEMATIC NAME"                      "OpenEye OEToolkits"  1.5.0  "(2S,3R,4S,5R)-5-(hydroxymethyl)oxolane-2,3,4-triol"  
RIB  "CONDENSED IUPAC CARBOHYDRATE SYMBOL"  GMML                  1.0    DRibfa  
RIB  "COMMON NAME"                          GMML                  1.0    a-D-ribofuranose  
RIB  "IUPAC CARBOHYDRATE SYMBOL"            PDB-CARE              1.0    a-D-Ribf  
RIB  "SNFG CARBOHYDRATE SYMBOL"             GMML                  1.0    Rib  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
RIB  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
RIB  "CARBOHYDRATE RING"                    furanose  PDB  ?  
RIB  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
RIB  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
RIB  "Create component"          1999-07-08  RCSB  
RIB  "Modify descriptor"         2011-06-04  RCSB  
RIB  "Other modification"        2019-08-12  RCSB  
RIB  "Other modification"        2019-12-19  RCSB  
RIB  "Other modification"        2020-07-03  RCSB  
RIB  "Modify name"               2020-07-17  RCSB  
RIB  "Modify synonyms"           2020-07-17  RCSB  
RIB  "Modify atom id"            2020-07-17  RCSB  
RIB  "Modify component atom id"  2020-07-17  RCSB  
##
