data_S5K
#

_chem_comp.id                                   S5K
_chem_comp.name                                 "[(1R)-2-(1-benzofuran-3-yl)-1-{[(1S,2R,4R)-7-oxabicyclo[2.2.1]heptan-2-yl]formamido}ethyl]boronic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C17 H20 B N O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "[(1~{R})-2-(1-benzofuran-3-yl)-1-[[(1~{S},2~{R},4~{R})-7-oxabicyclo[2.2.1]heptan-2-yl]carbonylamino]ethyl]boronic acid; [(1R)-2-(1-benzofuran-3-yl)-1-{[(1S,2R,4R)-7-oxabicyclo[2.2.1]heptan-2-yl]formamido}ethyl]boronic acid; ((R)-2-(benzofuran-3-yl)-1-((1S,2R,4R)-7-oxabicyclo[2.2.1]heptane-2-carboxamido)ethyl)boronic acid; [(1R)-2-(1-benzofuran-3-yl)-1-[[(1S,2R,4R)-7-oxabicyclo[2.2.1]heptan-2-yl]carbonylamino]ethyl]boronic acid"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-11-08
_chem_comp.pdbx_modified_date                   2021-06-04
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       329.155
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    S5K
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7AWE
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
S5K  C1   C1   C  0  1  N  N  R  -37.340  -23.635  -10.001   1.926  -0.693   0.037  C1   S5K   1  
S5K  C2   C2   C  0  1  N  N  S  -36.418  -22.553  -10.627   2.870  -1.212  -1.089  C2   S5K   2  
S5K  C7   C3   C  0  1  N  N  N  -36.514  -21.273   -9.791   3.513  -2.512  -0.520  C7   S5K   3  
S5K  C8   C4   C  0  1  N  N  N  -37.949  -20.762  -10.123   4.507  -1.969   0.538  C8   S5K   4  
S5K  C9   C5   C  0  1  Y  N  N  -36.076  -27.426  -12.748  -2.676   0.614  -0.175  C9   S5K   5  
S5K  C10  C6   C  0  1  N  N  N  -35.032  -27.387  -11.674  -2.110   1.893   0.386  C10  S5K   6  
S5K  C11  C7   C  0  1  N  N  R  -35.678  -27.067  -10.324  -0.689   2.097  -0.144  C11  S5K   7  
S5K  C16  C8   C  0  1  Y  N  N  -37.402  -27.529  -12.582  -3.422   0.481  -1.280  C16  S5K   8  
S5K  O17  O1   O  0  1  Y  N  N  -38.107  -27.291  -13.735  -3.745  -0.810  -1.468  O17  S5K   9  
S5K  C19  C9   C  0  1  Y  N  N  -37.158  -27.047  -14.694  -3.225  -1.583  -0.494  C19  S5K  10  
S5K  C20  C10  C  0  1  Y  N  N  -37.395  -26.774  -16.025  -3.261  -2.947  -0.236  C20  S5K  11  
S5K  C21  C11  C  0  1  Y  N  N  -36.294  -26.647  -16.854  -2.606  -3.457   0.865  C21  S5K  12  
S5K  C22  C12  C  0  1  Y  N  N  -35.006  -26.760  -16.341  -1.906  -2.621   1.723  C22  S5K  13  
S5K  O3   O2   O  0  1  N  N  N  -37.170  -22.170  -11.797   3.987  -0.270  -0.981  O3   S5K  14  
S5K  C4   C13  C  0  1  N  N  N  -37.195  -25.124  -10.295   1.035   0.408  -0.478  C4   S5K  15  
S5K  C5   C14  C  0  1  N  N  N  -38.751  -23.129  -10.412   2.920  -0.150   1.095  C5   S5K  16  
S5K  C6   C15  C  0  1  N  N  R  -38.405  -21.829  -11.139   4.307  -0.427   0.440  C6   S5K  17  
S5K  N12  N1   N  0  1  N  N  N  -35.953  -25.631  -10.237   0.177   1.027   0.357  N12  S5K  18  
S5K  B13  B1   B  0  1  N  N  N  -34.905  -27.763   -9.001  -0.142   3.485   0.345  B13  S5K  19  
S5K  O15  O3   O  0  1  N  N  N  -33.411  -27.392   -8.620   1.255   3.681   0.508  O15  S5K  20  
S5K  C18  C16  C  0  1  Y  N  N  -35.891  -27.142  -14.149  -2.516  -0.737   0.375  C18  S5K  21  
S5K  C23  C17  C  0  1  Y  N  N  -34.793  -26.998  -14.987  -1.858  -1.265   1.485  C23  S5K  22  
S5K  O24  O4   O  0  1  N  N  N  -38.183  -25.832  -10.466   1.089   0.736  -1.644  O24  S5K  23  
S5K  O25  O5   O  0  1  N  N  N  -35.753  -27.442   -7.769  -1.045   4.546   0.624  O25  S5K  24  
S5K  H1   H1   H  0  1  N  N  N  -37.269  -23.516   -8.910   1.331  -1.508   0.449  H1   S5K  25  
S5K  H2   H2   H  0  1  N  N  N  -35.389  -22.897  -10.810   2.413  -1.308  -2.073  H2   S5K  26  
S5K  H3   H3   H  0  1  N  N  N  -36.407  -21.490   -8.718   2.758  -3.144  -0.052  H3   S5K  27  
S5K  H4   H4   H  0  1  N  N  N  -35.751  -20.541  -10.095   4.039  -3.058  -1.304  H4   S5K  28  
S5K  H5   H5   H  0  1  N  N  N  -37.928  -19.758  -10.572   4.247  -2.330   1.533  H5   S5K  29  
S5K  H6   H6   H  0  1  N  N  N  -38.592  -20.751   -9.231   5.531  -2.245   0.284  H6   S5K  30  
S5K  H7   H7   H  0  1  N  N  N  -34.533  -28.366  -11.616  -2.735   2.732   0.080  H7   S5K  31  
S5K  H8   H8   H  0  1  N  N  N  -34.290  -26.611  -11.915  -2.087   1.834   1.474  H8   S5K  32  
S5K  H9   H9   H  0  1  N  N  N  -36.660  -27.563  -10.347  -0.701   2.075  -1.234  H9   S5K  33  
S5K  H10  H10  H  0  1  N  N  N  -37.867  -27.774  -11.639  -3.721   1.294  -1.926  H10  S5K  34  
S5K  H11  H11  H  0  1  N  N  N  -38.400  -26.664  -16.405  -3.803  -3.608  -0.896  H11  S5K  35  
S5K  H12  H12  H  0  1  N  N  N  -36.436  -26.459  -17.908  -2.637  -4.519   1.061  H12  S5K  36  
S5K  H13  H13  H  0  1  N  N  N  -34.159  -26.662  -17.004  -1.398  -3.035   2.582  H13  S5K  37  
S5K  H14  H14  H  0  1  N  N  N  -39.384  -22.942   -9.532   2.773   0.919   1.250  H14  S5K  38  
S5K  H15  H15  H  0  1  N  N  N  -39.255  -23.842  -11.081   2.819  -0.692   2.035  H15  S5K  39  
S5K  H16  H16  H  0  1  N  N  N  -39.204  -21.477  -11.807   5.129   0.185   0.810  H16  S5K  40  
S5K  H17  H17  H  0  1  N  N  N  -35.183  -25.002  -10.130   0.134   0.765   1.290  H17  S5K  41  
S5K  H18  H18  H  0  1  N  N  N  -33.149  -27.882   -7.849   1.788   2.903   0.295  H18  S5K  42  
S5K  H19  H19  H  0  1  N  N  N  -33.790  -27.070  -14.594  -1.313  -0.615   2.154  H19  S5K  43  
S5K  H20  H20  H  0  1  N  N  N  -35.347  -27.820   -6.998  -1.966   4.345   0.407  H20  S5K  44  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
S5K  C21  C22  DOUB  Y  N   1  
S5K  C21  C20  SING  Y  N   2  
S5K  C22  C23  SING  Y  N   3  
S5K  C20  C19  DOUB  Y  N   4  
S5K  C23  C18  DOUB  Y  N   5  
S5K  C19  C18  SING  Y  N   6  
S5K  C19  O17  SING  Y  N   7  
S5K  C18  C9   SING  Y  N   8  
S5K  O17  C16  SING  Y  N   9  
S5K  C9   C16  DOUB  Y  N  10  
S5K  C9   C10  SING  N  N  11  
S5K  O3   C6   SING  N  N  12  
S5K  O3   C2   SING  N  N  13  
S5K  C10  C11  SING  N  N  14  
S5K  C6   C5   SING  N  N  15  
S5K  C6   C8   SING  N  N  16  
S5K  C2   C1   SING  N  N  17  
S5K  C2   C7   SING  N  N  18  
S5K  O24  C4   DOUB  N  N  19  
S5K  C5   C1   SING  N  N  20  
S5K  C11  N12  SING  N  N  21  
S5K  C11  B13  SING  N  N  22  
S5K  C4   N12  SING  N  N  23  
S5K  C4   C1   SING  N  N  24  
S5K  C8   C7   SING  N  N  25  
S5K  B13  O15  SING  N  N  26  
S5K  B13  O25  SING  N  N  27  
S5K  C1   H1   SING  N  N  28  
S5K  C2   H2   SING  N  N  29  
S5K  C7   H3   SING  N  N  30  
S5K  C7   H4   SING  N  N  31  
S5K  C8   H5   SING  N  N  32  
S5K  C8   H6   SING  N  N  33  
S5K  C10  H7   SING  N  N  34  
S5K  C10  H8   SING  N  N  35  
S5K  C11  H9   SING  N  N  36  
S5K  C16  H10  SING  N  N  37  
S5K  C20  H11  SING  N  N  38  
S5K  C21  H12  SING  N  N  39  
S5K  C22  H13  SING  N  N  40  
S5K  C5   H14  SING  N  N  41  
S5K  C5   H15  SING  N  N  42  
S5K  C6   H16  SING  N  N  43  
S5K  N12  H17  SING  N  N  44  
S5K  O15  H18  SING  N  N  45  
S5K  C23  H19  SING  N  N  46  
S5K  O25  H20  SING  N  N  47  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
S5K  InChI             InChI                 1.03   "InChI=1S/C17H20BNO5/c20-17(13-8-11-5-6-15(13)24-11)19-16(18(21)22)7-10-9-23-14-4-2-1-3-12(10)14/h1-4,9,11,13,15-16,21-22H,5-8H2,(H,19,20)/t11-,13-,15+,16+/m1/s1"  
S5K  InChIKey          InChI                 1.03   RFQDLTYXNINJON-OYNZBZHQSA-N  
S5K  SMILES_CANONICAL  CACTVS                3.385  "OB(O)[C@H](Cc1coc2ccccc12)NC(=O)[C@@H]3C[C@H]4CC[C@@H]3O4"  
S5K  SMILES            CACTVS                3.385  "OB(O)[CH](Cc1coc2ccccc12)NC(=O)[CH]3C[CH]4CC[CH]3O4"  
S5K  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "B([C@H](Cc1coc2c1cccc2)NC(=O)[C@@H]3C[C@H]4CC[C@@H]3O4)(O)O"  
S5K  SMILES            "OpenEye OEToolkits"  2.0.7  "B(C(Cc1coc2c1cccc2)NC(=O)C3CC4CCC3O4)(O)O"  
#
_pdbx_chem_comp_identifier.comp_id          S5K
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "[(1~{R})-2-(1-benzofuran-3-yl)-1-[[(1~{S},2~{R},4~{R})-7-oxabicyclo[2.2.1]heptan-2-yl]carbonylamino]ethyl]boronic acid"
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  S5K  "[(1~{R})-2-(1-benzofuran-3-yl)-1-[[(1~{S},2~{R},4~{R})-7-oxabicyclo[2.2.1]heptan-2-yl]carbonylamino]ethyl]boronic acid"  PDB     ?  
2  S5K  "[(1R)-2-(1-benzofuran-3-yl)-1-[[(1S,2R,4R)-7-oxabicyclo[2.2.1]heptan-2-yl]carbonylamino]ethyl]boronic acid"              PDB     ?  
3  S5K  "((R)-2-(benzofuran-3-yl)-1-((1S,2R,4R)-7-oxabicyclo[2.2.1]heptane-2-carboxamido)ethyl)boronic acid"                      AUTHOR  ?  
4  S5K  "[(1R)-2-(1-benzofuran-3-yl)-1-{[(1S,2R,4R)-7-oxabicyclo[2.2.1]heptan-2-yl]formamido}ethyl]boronic acid"                  ?       ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
S5K  "Create component"  2020-11-08  PDBE  
S5K  "Modify synonyms"   2021-03-08  PDBE  
S5K  "Initial release"   2021-06-09  RCSB  
##
