data_S7N
#

_chem_comp.id                                   S7N
_chem_comp.name                                 "(phenylmethyl) ~{N}-[(2~{R})-3-methyl-1-[[(2~{S})-1-[[(3~{S})-1-methylsulfanyl-4-oxidanylidene-pentan-3-yl]amino]-1-oxidanylidene-propan-2-yl]amino]-1-oxidanylidene-butan-2-yl]carbamate"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C22 H33 N3 O5 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "Z-VAM-FMK;zVAM.fmk"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-11-10
_chem_comp.pdbx_modified_date                   2021-07-23
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       451.580
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    S7N
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7ARA
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
S7N  C10  C1   C  0  1  N  N  N  -31.323  43.826   5.012    2.317  -1.589   2.009  C10  S7N   1  
S7N  C20  C2   C  0  1  Y  N  N  -25.139  39.271   0.390   -7.195   1.003  -0.538  C20  S7N   2  
S7N  C21  C3   C  0  1  Y  N  N  -25.371  38.279  -0.591   -8.150   0.442   0.289  C21  S7N   3  
S7N  C22  C4   C  0  1  Y  N  N  -24.984  36.960  -0.353   -9.170   1.224   0.798  C22  S7N   4  
S7N  C24  C5   C  0  1  Y  N  N  -24.148  37.611   1.817   -8.279   3.129  -0.346  C24  S7N   5  
S7N  C26  C6   C  0  1  N  N  N  -28.278  44.724   0.764   -1.792  -2.806   0.316  C26  S7N   6  
S7N  C28  C7   C  0  1  N  N  N  -27.782  45.602   1.914   -2.971  -3.430  -0.433  C28  S7N   7  
S7N  C01  C8   C  0  1  N  N  N  -36.732  48.010   2.592    6.383   4.926   0.131  C01  S7N   8  
S7N  C03  C9   C  0  1  N  N  N  -36.129  45.178   2.894    6.021   2.133  -0.228  C03  S7N   9  
S7N  C04  C10  C  0  1  N  N  N  -35.789  43.870   2.131    6.609   0.724  -0.119  C04  S7N  10  
S7N  C05  C11  C  0  1  N  N  S  -35.302  42.826   3.147    5.573  -0.298  -0.591  C05  S7N  11  
S7N  C07  C12  C  0  1  N  N  N  -32.747  43.568   2.883    3.214  -0.686  -0.119  C07  S7N  12  
S7N  C09  C13  C  0  1  N  N  S  -31.373  43.279   3.585    2.033  -0.673   0.817  C09  S7N  13  
S7N  C12  C14  C  0  1  N  N  N  -29.560  42.842   1.987   -0.384  -0.775   0.522  C12  S7N  14  
S7N  C14  C15  C  0  1  N  N  R  -28.327  43.262   1.145   -1.610  -1.356  -0.134  C14  S7N  15  
S7N  C16  C16  C  0  1  N  N  N  -25.792  42.819   1.314   -3.873  -0.550  -0.545  C16  S7N  16  
S7N  C19  C17  C  0  1  N  N  N  -25.564  40.722   0.136   -6.087   0.148  -1.098  C19  S7N  17  
S7N  C23  C18  C  0  1  Y  N  N  -24.375  36.619   0.839   -9.234   2.568   0.480  C23  S7N  18  
S7N  C25  C19  C  0  1  Y  N  N  -24.531  38.932   1.583   -7.260   2.346  -0.856  C25  S7N  19  
S7N  C27  C20  C  0  1  N  N  N  -29.576  45.243   0.107   -2.068  -2.843   1.821  C27  S7N  20  
S7N  C29  C21  C  0  1  N  N  N  -35.446  41.371   2.730    6.191  -1.672  -0.601  C29  S7N  21  
S7N  C30  C22  C  0  1  N  N  N  -34.661  40.411   3.639    7.163  -2.054  -1.688  C30  S7N  22  
S7N  N06  N1   N  0  1  N  N  N  -33.897  42.865   3.499    4.424  -0.285   0.318  N06  S7N  23  
S7N  N11  N2   N  0  1  N  N  N  -30.245  43.766   2.820    0.843  -1.150   0.108  N11  S7N  24  
S7N  N15  N3   N  0  1  N  N  N  -27.138  42.936   1.943   -2.787  -0.573   0.253  N15  S7N  25  
S7N  O08  O1   O  0  1  N  N  N  -32.829  44.331   1.920    3.076  -1.057  -1.265  O08  S7N  26  
S7N  O13  O2   O  0  1  N  N  N  -29.940  41.695   1.949   -0.501   0.028   1.423  O13  S7N  27  
S7N  O17  O3   O  0  1  N  N  N  -25.235  43.816   0.845   -3.876  -1.177  -1.586  O17  S7N  28  
S7N  O18  O4   O  0  1  N  N  N  -25.146  41.531   1.260   -4.954   0.169  -0.190  O18  S7N  29  
S7N  O31  O5   O  0  1  N  N  N  -36.088  41.002   1.774    5.908  -2.467   0.263  O31  S7N  30  
S7N  S02  S1   S  0  1  N  N  N  -36.691  46.417   1.761    7.249   3.345   0.331  S02  S7N  31  
S7N  H1   H1   H  0  1  N  N  N  -32.185  43.448   5.581    2.488  -2.605   1.655  H1   S7N  32  
S7N  H2   H2   H  0  1  N  N  N  -30.392  43.499   5.498    3.202  -1.234   2.537  H2   S7N  33  
S7N  H3   H3   H  0  1  N  N  N  -31.356  44.925   4.985    1.462  -1.579   2.686  H3   S7N  34  
S7N  H4   H4   H  0  1  N  N  N  -25.847  38.542  -1.524   -8.100  -0.608   0.538  H4   S7N  35  
S7N  H5   H5   H  0  1  N  N  N  -25.161  36.203  -1.103   -9.916   0.785   1.444  H5   S7N  36  
S7N  H6   H6   H  0  1  N  N  N  -23.675  37.346   2.751   -8.329   4.179  -0.595  H6   S7N  37  
S7N  H7   H7   H  0  1  N  N  N  -27.507  44.801  -0.017   -0.884  -3.370   0.100  H7   S7N  38  
S7N  H8   H8   H  0  1  N  N  N  -26.859  45.173   2.331   -2.774  -3.404  -1.505  H8   S7N  39  
S7N  H9   H9   H  0  1  N  N  N  -27.579  46.616   1.540   -3.100  -4.463  -0.113  H9   S7N  40  
S7N  H10  H10  H  0  1  N  N  N  -28.552  45.648   2.698   -3.878  -2.866  -0.217  H10  S7N  41  
S7N  H11  H11  H  0  1  N  N  N  -37.081  48.782   1.890    7.037   5.741   0.442  H11  S7N  42  
S7N  H12  H12  H  0  1  N  N  N  -37.418  47.958   3.450    6.109   5.060  -0.916  H12  S7N  43  
S7N  H13  H13  H  0  1  N  N  N  -35.722  48.265   2.945    5.483   4.927   0.745  H13  S7N  44  
S7N  H14  H14  H  0  1  N  N  N  -35.229  45.541   3.412    5.756   2.337  -1.266  H14  S7N  45  
S7N  H15  H15  H  0  1  N  N  N  -36.920  44.974   3.631    5.130   2.204   0.395  H15  S7N  46  
S7N  H16  H16  H  0  1  N  N  N  -36.687  43.497   1.616    7.500   0.653  -0.743  H16  S7N  47  
S7N  H17  H17  H  0  1  N  N  N  -34.998  44.066   1.392    6.873   0.521   0.918  H17  S7N  48  
S7N  H18  H18  H  0  1  N  N  N  -35.892  42.965   4.065    5.242  -0.042  -1.598  H18  S7N  49  
S7N  H19  H19  H  0  1  N  N  N  -31.285  42.185   3.658    1.861   0.343   1.171  H19  S7N  50  
S7N  H20  H20  H  0  1  N  N  N  -28.320  42.659   0.225   -1.493  -1.323  -1.217  H20  S7N  51  
S7N  H21  H21  H  0  1  N  N  N  -25.087  41.092  -0.784   -6.442  -0.876  -1.213  H21  S7N  52  
S7N  H22  H22  H  0  1  N  N  N  -26.658  40.774   0.029   -5.782   0.539  -2.068  H22  S7N  53  
S7N  H23  H23  H  0  1  N  N  N  -24.074  35.598   1.022  -10.031   3.179   0.877  H23  S7N  54  
S7N  H24  H24  H  0  1  N  N  N  -24.352  39.688   2.333   -6.514   2.785  -1.502  H24  S7N  55  
S7N  H25  H25  H  0  1  N  N  N  -29.462  46.309  -0.140   -2.119  -3.879   2.156  H25  S7N  56  
S7N  H26  H26  H  0  1  N  N  N  -29.775  44.673  -0.813   -1.265  -2.329   2.350  H26  S7N  57  
S7N  H27  H27  H  0  1  N  N  N  -30.416  45.116   0.805   -3.015  -2.346   2.029  H27  S7N  58  
S7N  H28  H28  H  0  1  N  N  N  -34.785  39.379   3.278    7.293  -1.214  -2.370  H28  S7N  59  
S7N  H29  H29  H  0  1  N  N  N  -33.594  40.680   3.622    8.124  -2.312  -1.242  H29  S7N  60  
S7N  H30  H30  H  0  1  N  N  N  -35.042  40.487   4.668    6.775  -2.912  -2.237  H30  S7N  61  
S7N  H31  H31  H  0  1  N  N  N  -33.661  42.319   4.303    4.535   0.011   1.235  H31  S7N  62  
S7N  H32  H32  H  0  1  N  N  N  -29.957  44.722   2.876    0.938  -1.735  -0.660  H32  S7N  63  
S7N  H33  H33  H  0  1  N  N  N  -27.233  42.790   2.928   -2.785  -0.073   1.084  H33  S7N  64  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
S7N  C21  C22  DOUB  Y  N   1  
S7N  C21  C20  SING  Y  N   2  
S7N  C22  C23  SING  Y  N   3  
S7N  C27  C26  SING  N  N   4  
S7N  C19  C20  SING  N  N   5  
S7N  C19  O18  SING  N  N   6  
S7N  C20  C25  DOUB  Y  N   7  
S7N  C26  C14  SING  N  N   8  
S7N  C26  C28  SING  N  N   9  
S7N  C23  C24  DOUB  Y  N  10  
S7N  O17  C16  DOUB  N  N  11  
S7N  C14  N15  SING  N  N  12  
S7N  C14  C12  SING  N  N  13  
S7N  O18  C16  SING  N  N  14  
S7N  C16  N15  SING  N  N  15  
S7N  C25  C24  SING  Y  N  16  
S7N  S02  C01  SING  N  N  17  
S7N  S02  C03  SING  N  N  18  
S7N  O31  C29  DOUB  N  N  19  
S7N  O08  C07  DOUB  N  N  20  
S7N  O13  C12  DOUB  N  N  21  
S7N  C12  N11  SING  N  N  22  
S7N  C04  C03  SING  N  N  23  
S7N  C04  C05  SING  N  N  24  
S7N  C29  C05  SING  N  N  25  
S7N  C29  C30  SING  N  N  26  
S7N  N11  C09  SING  N  N  27  
S7N  C07  N06  SING  N  N  28  
S7N  C07  C09  SING  N  N  29  
S7N  C05  N06  SING  N  N  30  
S7N  C09  C10  SING  N  N  31  
S7N  C10  H1   SING  N  N  32  
S7N  C10  H2   SING  N  N  33  
S7N  C10  H3   SING  N  N  34  
S7N  C21  H4   SING  N  N  35  
S7N  C22  H5   SING  N  N  36  
S7N  C24  H6   SING  N  N  37  
S7N  C26  H7   SING  N  N  38  
S7N  C28  H8   SING  N  N  39  
S7N  C28  H9   SING  N  N  40  
S7N  C28  H10  SING  N  N  41  
S7N  C01  H11  SING  N  N  42  
S7N  C01  H12  SING  N  N  43  
S7N  C01  H13  SING  N  N  44  
S7N  C03  H14  SING  N  N  45  
S7N  C03  H15  SING  N  N  46  
S7N  C04  H16  SING  N  N  47  
S7N  C04  H17  SING  N  N  48  
S7N  C05  H18  SING  N  N  49  
S7N  C09  H19  SING  N  N  50  
S7N  C14  H20  SING  N  N  51  
S7N  C19  H21  SING  N  N  52  
S7N  C19  H22  SING  N  N  53  
S7N  C23  H23  SING  N  N  54  
S7N  C25  H24  SING  N  N  55  
S7N  C27  H25  SING  N  N  56  
S7N  C27  H26  SING  N  N  57  
S7N  C27  H27  SING  N  N  58  
S7N  C30  H28  SING  N  N  59  
S7N  C30  H29  SING  N  N  60  
S7N  C30  H30  SING  N  N  61  
S7N  N06  H31  SING  N  N  62  
S7N  N11  H32  SING  N  N  63  
S7N  N15  H33  SING  N  N  64  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
S7N  InChI             InChI                 1.03   "InChI=1S/C22H33N3O5S/c1-14(2)19(25-22(29)30-13-17-9-7-6-8-10-17)21(28)23-15(3)20(27)24-18(16(4)26)11-12-31-5/h6-10,14-15,18-19H,11-13H2,1-5H3,(H,23,28)(H,24,27)(H,25,29)/t15-,18-,19+/m0/s1"  
S7N  InChIKey          InChI                 1.03   XQQSDBOJVLTWFC-ZYSHUDEJSA-N  
S7N  SMILES_CANONICAL  CACTVS                3.385  "CSCC[C@H](NC(=O)[C@H](C)NC(=O)[C@H](NC(=O)OCc1ccccc1)C(C)C)C(C)=O"  
S7N  SMILES            CACTVS                3.385  "CSCC[CH](NC(=O)[CH](C)NC(=O)[CH](NC(=O)OCc1ccccc1)C(C)C)C(C)=O"  
S7N  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@@H](C(=O)N[C@@H](CCSC)C(=O)C)NC(=O)[C@@H](C(C)C)NC(=O)OCc1ccccc1"  
S7N  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)C(C(=O)NC(C)C(=O)NC(CCSC)C(=O)C)NC(=O)OCc1ccccc1"  
#
_pdbx_chem_comp_identifier.comp_id          S7N
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(phenylmethyl) ~{N}-[(2~{R})-3-methyl-1-[[(2~{S})-1-[[(3~{S})-1-methylsulfanyl-4-oxidanylidene-pentan-3-yl]amino]-1-oxidanylidene-propan-2-yl]amino]-1-oxidanylidene-butan-2-yl]carbamate"
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  S7N  Z-VAM-FMK  ?  ?  
2  S7N  zVAM.fmk   ?  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
S7N  "Create component"  2020-11-10  PDBE  
S7N  "Initial release"   2021-07-28  RCSB  
##
