data_SPD
#

_chem_comp.id                                   SPD
_chem_comp.name                                 SPERMIDINE
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAI
_chem_comp.formula                              "C7 H19 N3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "N-(2-AMINO-PROPYL)-1,4-DIAMINOBUTANE; PA(34)"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-07-08
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       145.246
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    SPD
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       293D
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
SPD  N1    N1    N  0  1  N  N  N  24.100  26.055  3.515  -0.355  -0.007   5.520  N1    SPD   1  
SPD  C2    C2    C  0  1  N  N  N  23.470  25.626  2.142   0.495  -0.030   4.323  C2    SPD   2  
SPD  C3    C3    C  0  1  N  N  N  22.619  24.333  1.964  -0.383  -0.007   3.071  C3    SPD   3  
SPD  C4    C4    C  0  1  N  N  N  21.198  24.248  2.590   0.502  -0.031   1.824  C4    SPD   4  
SPD  C5    C5    C  0  1  N  N  N  21.189  24.826  4.077  -0.377  -0.008   0.573  C5    SPD   5  
SPD  N6    N6    N  0  1  N  N  N  21.241  23.936  5.294   0.474  -0.031  -0.623  N6    SPD   6  
SPD  C7    C7    C  0  1  N  N  N  21.396  22.394  5.196  -0.427  -0.007  -1.783  C7    SPD   7  
SPD  C8    C8    C  0  1  N  N  N  20.673  21.474  6.235   0.397  -0.030  -3.071  C8    SPD   8  
SPD  C9    C9    C  0  1  N  N  N  19.140  21.193  6.000  -0.541  -0.005  -4.279  C9    SPD   9  
SPD  N10   N10   N  0  1  N  N  N  18.744  20.137  4.896   0.250  -0.027  -5.516  N10   SPD  10  
SPD  HN11  1HN1  H  0  0  N  N  N  24.657  26.901  3.631  -0.816   0.890   5.530  HN11  SPD  11  
SPD  HN12  2HN1  H  0  0  N  N  N  24.661  25.272  3.850   0.263  -0.023   6.316  HN12  SPD  12  
SPD  H21   1H2   H  0  1  N  N  N  22.856  26.481  1.775   1.148   0.842   4.324  H21   SPD  13  
SPD  H22   2H2   H  0  1  N  N  N  24.296  25.586  1.394   1.100  -0.937   4.325  H22   SPD  14  
SPD  H31   1H3   H  0  1  N  N  N  22.538  24.110  0.874  -1.037  -0.879   3.070  H31   SPD  15  
SPD  H32   2H3   H  0  1  N  N  N  23.216  23.464  2.325  -0.988   0.899   3.069  H32   SPD  16  
SPD  H41   1H4   H  0  1  N  N  N  20.436  24.751  1.949   1.155   0.841   1.826  H41   SPD  17  
SPD  H42   2H4   H  0  1  N  N  N  20.793  23.209  2.550   1.107  -0.938   1.826  H42   SPD  18  
SPD  H51   1H5   H  0  1  N  N  N  22.026  25.557  4.158  -1.030  -0.880   0.571  H51   SPD  19  
SPD  H52   2H5   H  0  1  N  N  N  20.292  25.481  4.177  -0.982   0.898   0.571  H52   SPD  20  
SPD  HN6   HN6   H  0  1  N  N  N  20.407  24.126  5.850   0.983   0.839  -0.634  HN6   SPD  21  
SPD  H71   1H7   H  0  1  N  N  N  21.098  22.072  4.170  -1.080  -0.879  -1.754  H71   SPD  22  
SPD  H72   2H7   H  0  1  N  N  N  22.483  22.146  5.199  -1.031   0.899  -1.754  H72   SPD  23  
SPD  H81   1H8   H  0  1  N  N  N  21.219  20.505  6.317   1.050   0.842  -3.100  H81   SPD  24  
SPD  H82   2H8   H  0  1  N  N  N  20.822  21.883  7.261   1.001  -0.936  -3.100  H82   SPD  25  
SPD  H91   1H9   H  0  1  N  N  N  18.667  20.905  6.968  -1.194  -0.877  -4.250  H91   SPD  26  
SPD  H92   2H9   H  0  1  N  N  N  18.619  22.156  5.789  -1.145   0.901  -4.250  H92   SPD  27  
SPD  H101  1H10  H  0  0  N  N  N  17.751  19.955  4.743  -0.406  -0.009  -6.281  H101  SPD  28  
SPD  H102  2H10  H  0  0  N  N  N  19.220  19.255  5.089   0.759   0.843  -5.550  H102  SPD  29  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
SPD  N1   C2    SING  N  N   1  
SPD  N1   HN11  SING  N  N   2  
SPD  N1   HN12  SING  N  N   3  
SPD  C2   C3    SING  N  N   4  
SPD  C2   H21   SING  N  N   5  
SPD  C2   H22   SING  N  N   6  
SPD  C3   C4    SING  N  N   7  
SPD  C3   H31   SING  N  N   8  
SPD  C3   H32   SING  N  N   9  
SPD  C4   C5    SING  N  N  10  
SPD  C4   H41   SING  N  N  11  
SPD  C4   H42   SING  N  N  12  
SPD  C5   N6    SING  N  N  13  
SPD  C5   H51   SING  N  N  14  
SPD  C5   H52   SING  N  N  15  
SPD  N6   C7    SING  N  N  16  
SPD  N6   HN6   SING  N  N  17  
SPD  C7   C8    SING  N  N  18  
SPD  C7   H71   SING  N  N  19  
SPD  C7   H72   SING  N  N  20  
SPD  C8   C9    SING  N  N  21  
SPD  C8   H81   SING  N  N  22  
SPD  C8   H82   SING  N  N  23  
SPD  C9   N10   SING  N  N  24  
SPD  C9   H91   SING  N  N  25  
SPD  C9   H92   SING  N  N  26  
SPD  N10  H101  SING  N  N  27  
SPD  N10  H102  SING  N  N  28  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
SPD  SMILES            ACDLabs               10.04  NCCCNCCCCN  
SPD  SMILES_CANONICAL  CACTVS                3.341  NCCCCNCCCN  
SPD  SMILES            CACTVS                3.341  NCCCCNCCCN  
SPD  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C(CCNCCCN)CN"  
SPD  SMILES            "OpenEye OEToolkits"  1.5.0  "C(CCNCCCN)CN"  
SPD  InChI             InChI                 1.03   "InChI=1S/C7H19N3/c8-4-1-2-6-10-7-3-5-9/h10H,1-9H2"  
SPD  InChIKey          InChI                 1.03   ATHGHQPFGPMSJY-UHFFFAOYSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
SPD  "SYSTEMATIC NAME"  ACDLabs               10.04  "N-(3-aminopropyl)butane-1,4-diamine"  
SPD  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "N-(3-aminopropyl)butane-1,4-diamine"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
SPD  "Create component"   1999-07-08  RCSB  
SPD  "Modify descriptor"  2011-06-04  RCSB  
SPD  "Modify synonyms"    2020-06-05  PDBE  
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  SPD  "N-(2-AMINO-PROPYL)-1,4-DIAMINOBUTANE"  ?  ?  
2  SPD  "PA(34)"                                ?  ?  
##
