data_SXC
#

_chem_comp.id                                   SXC
_chem_comp.name                                 "bromo(4-{3-[(R)-ethoxy(4-nitrophenoxy)phosphoryl]propyl}-2,6-bis[(methylsulfanyl-kappaS)methyl]phenyl-kappaC~1~)palladium(2+)"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C21 H27 Br N O5 P Pd S2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "ethyl 4-nitrophenyl P-[3-(4-(bromopallado)-1,3-bis[(methylthio)methyl]-phenyl)propyl]phosphonate"
_chem_comp.pdbx_formal_charge                   2
_chem_comp.pdbx_initial_date                    2008-10-08
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       654.871
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    SXC
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3ESC
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
SXC  BR1   BR1   BR   0  0  N  N  N  39.643  -26.548   4.878  -6.547  -0.586   0.834  BR1   SXC   1  
SXC  PD1   PD1   PD   0  0  N  N  S  38.801  -24.697   6.218  -4.768   0.147  -0.312  PD1   SXC   2  
SXC  S1    S1    S    1  1  N  N  R  37.633  -23.694   4.516  -4.342  -0.856  -2.181  S1    SXC   3  
SXC  S2    S2    S    1  1  N  N  R  39.796  -25.304   8.153  -4.518   2.292  -0.441  S2    SXC   4  
SXC  P1    P1    P    0  1  N  N  R  32.451  -19.844  11.698   4.483  -0.360   0.928  P1    SXC   5  
SXC  O1    O1    O    0  1  N  N  N  32.841  -20.920  12.716   4.538   1.231   0.688  O1    SXC   6  
SXC  O2    O2    O    0  1  N  N  N  31.317  -20.244  10.804   4.349  -1.051  -0.374  O2    SXC   7  
SXC  C1    C1    C    0  1  Y  N  N  38.116  -23.156   7.338  -3.008  -0.163   0.416  C1    SXC   8  
SXC  C2    C2    C    0  1  Y  N  N  37.427  -22.098   6.750  -2.465  -1.247  -0.148  C2    SXC   9  
SXC  C3    C3    C    0  1  Y  N  N  36.877  -21.070   7.530  -1.215  -1.512   0.465  C3    SXC  10  
SXC  C4    C4    C    0  1  Y  N  N  36.923  -21.116   8.895  -0.716  -0.557   1.332  C4    SXC  11  
SXC  C5    C5    C    0  1  Y  N  N  37.614  -22.122   9.537  -1.286   0.678   1.585  C5    SXC  12  
SXC  C6    C6    C    0  1  Y  N  N  38.229  -23.107   8.746  -2.542   0.955   0.984  C6    SXC  13  
SXC  C7    C7    C    0  1  N  N  N  37.384  -22.044   5.222  -3.042  -1.914  -1.386  C7    SXC  14  
SXC  C9    C9    C    0  1  N  N  N  38.823  -23.456   3.180  -5.742  -1.995  -2.361  C9    SXC  15  
SXC  C10   C10   C    0  1  N  N  N  39.127  -24.114   9.404  -3.261   2.287   0.925  C10   SXC  16  
SXC  C12   C12   C    0  1  N  N  N  38.977  -26.799   8.582  -3.502   2.496  -1.930  C12   SXC  17  
SXC  C13   C13   C    0  1  N  N  N  36.173  -20.094   9.745   0.557  -0.890   2.065  C13   SXC  18  
SXC  C14   C14   C    0  1  N  N  N  34.811  -20.653  10.273   1.758  -0.428   1.237  C14   SXC  19  
SXC  C15   C15   C    0  1  N  N  N  33.976  -19.488  10.826   3.051  -0.766   1.981  C15   SXC  20  
SXC  C16   C16   C    0  1  N  N  N  31.959  -21.329  13.799   3.833   1.883  -0.370  C16   SXC  21  
SXC  C17   C17   C    0  1  N  N  N  32.418  -22.696  14.398   4.011   3.398  -0.244  C17   SXC  22  
SXC  O3    O3    O    0  1  N  N  N  32.107  -18.481  12.434   5.837  -0.840   1.654  O3    SXC  23  
SXC  H3    H3    H    0  1  N  N  N  36.409  -20.227   7.043  -0.673  -2.424   0.263  H3    SXC  24  
SXC  H5    H5    H    0  1  N  N  N  37.680  -22.152  10.615  -0.794   1.403   2.215  H5    SXC  25  
SXC  H17   H17   H    0  1  N  N  N  38.181  -21.376   4.863  -3.483  -2.870  -1.103  H17   SXC  26  
SXC  H27   H27   H    0  1  N  N  N  36.399  -21.669   4.908  -2.239  -2.091  -2.102  H27   SXC  27  
SXC  H19   H19   H    0  1  N  N  N  38.291  -23.408   2.219  -5.893  -2.536  -1.426  H19   SXC  28  
SXC  H29   H29   H    0  1  N  N  N  39.373  -22.517   3.342  -6.642  -1.430  -2.603  H29   SXC  29  
SXC  H39   H39   H    0  1  N  N  N  39.530  -24.298   3.165  -5.532  -2.705  -3.161  H39   SXC  30  
SXC  H110  H110  H    0  0  N  N  N  38.552  -24.670  10.159  -2.528   3.073   0.740  H110  SXC  31  
SXC  H210  H210  H    0  0  N  N  N  39.968  -23.585   9.877  -3.762   2.483   1.873  H210  SXC  32  
SXC  H112  H112  H    0  0  N  N  N  38.806  -27.397   7.675  -4.030   2.083  -2.789  H112  SXC  33  
SXC  H212  H212  H    0  0  N  N  N  39.601  -27.370   9.285  -3.310   3.556  -2.096  H212  SXC  34  
SXC  H312  H312  H    0  0  N  N  N  38.011  -26.565   9.054  -2.556   1.971  -1.799  H312  SXC  35  
SXC  H113  H113  H    0  0  N  N  N  36.801  -19.827  10.608   0.564  -0.383   3.030  H113  SXC  36  
SXC  H213  H213  H    0  0  N  N  N  35.959  -19.219   9.114   0.616  -1.967   2.220  H213  SXC  37  
SXC  H114  H114  H    0  0  N  N  N  34.267  -21.141   9.450   1.751  -0.935   0.272  H114  SXC  38  
SXC  H214  H214  H    0  0  N  N  N  34.994  -21.390  11.068   1.699   0.650   1.082  H214  SXC  39  
SXC  H115  H115  H    0  0  N  N  N  34.623  -18.954  11.538   3.066  -1.830   2.220  H115  SXC  40  
SXC  H215  H215  H    0  0  N  N  N  33.651  -18.941   9.929   3.102  -0.186   2.903  H215  SXC  41  
SXC  H116  H116  H    0  0  N  N  N  31.982  -20.564  14.589   4.228   1.550  -1.330  H116  SXC  42  
SXC  H216  H216  H    0  0  N  N  N  30.939  -21.440  13.402   2.773   1.636  -0.308  H216  SXC  43  
SXC  H117  H117  H    0  0  N  N  N  32.526  -23.434  13.589   3.473   3.895  -1.051  H117  SXC  44  
SXC  H217  H217  H    0  0  N  N  N  33.384  -22.567  14.908   3.615   3.731   0.716  H217  SXC  45  
SXC  H317  H317  H    0  0  N  N  N  31.667  -23.051  15.119   5.070   3.646  -0.306  H317  SXC  46  
SXC  C161  C161  C    0  0  Y  N  N  32.822  -17.243  12.434   6.961  -0.638   0.918  C161  SXC  47  
SXC  C171  C171  C    0  0  Y  N  N  32.822  -14.163  12.434   9.249  -0.227  -0.582  C171  SXC  48  
SXC  C18   C18   C    0  1  Y  N  N  31.488  -14.932  12.434   8.562  -1.423  -0.685  C18   SXC  49  
SXC  C19   C19   C    0  1  Y  N  N  31.488  -16.473  12.434   7.419  -1.630   0.063  C19   SXC  50  
SXC  C20   C20   C    0  1  Y  N  N  34.156  -16.473  12.434   7.649   0.563   1.014  C20   SXC  51  
SXC  C21   C21   C    0  1  Y  N  N  34.156  -14.932  12.434   8.791   0.765   0.264  C21   SXC  52  
SXC  N1    N1    N    1  1  N  N  N  32.822  -12.693  12.434  10.473  -0.008  -1.384  N1    SXC  53  
SXC  O4    O4    O   -1  1  N  N  N  34.000  -12.012  12.434  10.875  -0.880  -2.134  O4    SXC  54  
SXC  O5    O5    O    0  1  N  N  N  31.809  -12.108  12.434  11.079   1.045  -1.295  O5    SXC  55  
SXC  H24   H24   H    0  1  N  N  N  30.553  -14.392  12.434   8.921  -2.197  -1.347  H24   SXC  56  
SXC  H25   H25   H    0  1  N  N  N  30.553  -17.013  12.434   6.883  -2.565  -0.017  H25   SXC  57  
SXC  H26   H26   H    0  1  N  N  N  35.091  -17.013  12.434   7.291   1.339   1.675  H26   SXC  58  
SXC  H271  H271  H    0  0  N  N  N  35.091  -14.392  12.434   9.329   1.698   0.343  H271  SXC  59  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
SXC  BR1   PD1   SING  N  N   1  
SXC  PD1   C1    SING  N  N   2  
SXC  PD1   S2    SING  N  N   3  
SXC  S1    C7    SING  N  N   4  
SXC  S1    PD1   SING  N  N   5  
SXC  S2    C12   SING  N  N   6  
SXC  S2    C10   SING  N  N   7  
SXC  O3    P1    SING  N  N   8  
SXC  P1    O1    SING  N  N   9  
SXC  O1    C16   SING  N  N  10  
SXC  O2    P1    DOUB  N  N  11  
SXC  C1    C6    DOUB  Y  N  12  
SXC  C2    C1    SING  Y  N  13  
SXC  C2    C3    DOUB  Y  N  14  
SXC  C3    C4    SING  Y  N  15  
SXC  C3    H3    SING  N  N  16  
SXC  C4    C5    DOUB  Y  N  17  
SXC  C4    C13   SING  N  N  18  
SXC  C5    H5    SING  N  N  19  
SXC  C6    C10   SING  N  N  20  
SXC  C6    C5    SING  Y  N  21  
SXC  C7    C2    SING  N  N  22  
SXC  C7    H17   SING  N  N  23  
SXC  C7    H27   SING  N  N  24  
SXC  C9    S1    SING  N  N  25  
SXC  C9    H19   SING  N  N  26  
SXC  C9    H29   SING  N  N  27  
SXC  C9    H39   SING  N  N  28  
SXC  C10   H110  SING  N  N  29  
SXC  C10   H210  SING  N  N  30  
SXC  C12   H112  SING  N  N  31  
SXC  C12   H212  SING  N  N  32  
SXC  C12   H312  SING  N  N  33  
SXC  C13   C14   SING  N  N  34  
SXC  C13   H113  SING  N  N  35  
SXC  C13   H213  SING  N  N  36  
SXC  C14   C15   SING  N  N  37  
SXC  C14   H114  SING  N  N  38  
SXC  C14   H214  SING  N  N  39  
SXC  C15   P1    SING  N  N  40  
SXC  C15   H115  SING  N  N  41  
SXC  C15   H215  SING  N  N  42  
SXC  C16   C17   SING  N  N  43  
SXC  C16   H116  SING  N  N  44  
SXC  C16   H216  SING  N  N  45  
SXC  C17   H117  SING  N  N  46  
SXC  C17   H217  SING  N  N  47  
SXC  C17   H317  SING  N  N  48  
SXC  O3    C161  SING  N  N  49  
SXC  C19   C161  DOUB  Y  N  50  
SXC  C161  C20   SING  Y  N  51  
SXC  C171  C18   DOUB  Y  N  52  
SXC  C18   C19   SING  Y  N  53  
SXC  C20   C21   DOUB  Y  N  54  
SXC  C171  C21   SING  Y  N  55  
SXC  C171  N1    SING  N  N  56  
SXC  N1    O4    SING  N  N  57  
SXC  N1    O5    DOUB  N  N  58  
SXC  C18   H24   SING  N  N  59  
SXC  C19   H25   SING  N  N  60  
SXC  C20   H26   SING  N  N  61  
SXC  C21   H271  SING  N  N  62  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
SXC  SMILES            ACDLabs               10.04  "[O-][N+](=O)c4ccc(OP(=O)(OCC)CCCc1cc2c3c(c1)C[S+](C)[Pd]3(Br)[S+](C2)C)cc4"  
SXC  SMILES_CANONICAL  CACTVS                3.341  "CCO[P@](=O)(CCCc1cc2C[S@@+](C)[Pd@@]3(Br)[S@+](C)Cc(c1)c23)Oc4ccc(cc4)[N+]([O-])=O"  
SXC  SMILES            CACTVS                3.341  "CCO[P](=O)(CCCc1cc2C[S+](C)[Pd]3(Br)[S+](C)Cc(c1)c23)Oc4ccc(cc4)[N+]([O-])=O"  
SXC  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "CCO[P@](=O)(CCCc1cc2c3c(c1)C[S@+]([Pd]3([S@@+](C2)C)Br)C)Oc4ccc(cc4)[N+](=O)[O-]"  
SXC  SMILES            "OpenEye OEToolkits"  1.5.0  "CCOP(=O)(CCCc1cc2c3c(c1)C[S+]([Pd]3([S+](C2)C)Br)C)Oc4ccc(cc4)[N+](=O)[O-]"  
SXC  InChI             InChI                 1.03   "InChI=1S/C21H27NO5PS2.BrH.Pd/c1-4-26-28(25,27-21-9-7-20(8-10-21)22(23)24)11-5-6-17-12-18(15-29-2)14-19(13-17)16-30-3;;/h7-10,12-13H,4-6,11,15-16H2,1-3H3;1H;/q;;+3/p-1/t28-;;/m1../s1"  
SXC  InChIKey          InChI                 1.03   UQJAYMPWLMSAFV-QDSLRZTOSA-M  
#
_pdbx_chem_comp_identifier.comp_id          SXC
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          ACDLabs
_pdbx_chem_comp_identifier.program_version  10.04
_pdbx_chem_comp_identifier.identifier       "bromo(4-{3-[(R)-ethoxy(4-nitrophenoxy)phosphoryl]propyl}-2,6-bis[(methylsulfanyl-kappaS)methyl]phenyl-kappaC~1~)palladium(2+)"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
SXC  "Create component"      2008-10-08  PDBJ  
SXC  "Modify aromatic_flag"  2011-06-04  RCSB  
SXC  "Modify descriptor"     2011-06-04  RCSB  
SXC  "Modify synonyms"       2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     SXC
_pdbx_chem_comp_synonyms.name        "ethyl 4-nitrophenyl P-[3-(4-(bromopallado)-1,3-bis[(methylthio)methyl]-phenyl)propyl]phosphonate"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
