data_SXM
#

_chem_comp.id                                   SXM
_chem_comp.name                                 "3-{[2-({N-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl]sulfanyl}-3-oxopropanoic acid"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C14 H25 N2 O10 P S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "THIOMALONIC ACID S-{2-[3-(2-HYDROXY-3,3-DIMETHYL-4-PHOSPHONOOXY-BUTYRYLAMINO)-PROPIONYLAMINO]-ETHYL} ESTER"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2009-03-30
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       444.394
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    SXM
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2KG8
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
SXM  P24   P24   P  0  1  N  N  N   8.979   9.864   0.008    6.264   2.410  -0.347  P24   SXM   1  
SXM  O26   O26   O  0  1  N  Y  N   9.343   9.593  -1.396    4.964   2.938  -1.136  O26   SXM   2  
SXM  O23   O23   O  0  1  N  Y  N   9.906  10.667   0.843    6.865   3.601   0.554  O23   SXM   3  
SXM  O27   O27   O  0  1  N  N  N   7.565  10.513   0.077    5.852   1.175   0.600  O27   SXM   4  
SXM  C28   C28   C  0  1  N  N  N   7.365  11.791  -0.609    5.384  -0.075   0.090  C28   SXM   5  
SXM  C29   C29   C  0  1  N  N  N   5.988  12.393  -0.267    5.084  -1.021   1.255  C29   SXM   6  
SXM  C30   C30   C  0  1  N  N  N   4.943  11.422  -0.763    6.359  -1.248   2.069  C30   SXM   7  
SXM  C31   C31   C  0  1  N  N  N   5.841  12.563   1.239    4.010  -0.401   2.151  C31   SXM   8  
SXM  C32   C32   C  0  1  N  N  S   5.764  13.798  -0.980    4.583  -2.359   0.709  C32   SXM   9  
SXM  O33   O33   O  0  1  N  N  N   5.384  13.661  -2.360    5.630  -2.997  -0.025  O33   SXM  10  
SXM  C34   C34   C  0  1  N  N  N   6.982  14.720  -0.904    3.405  -2.121  -0.200  C34   SXM  11  
SXM  O35   O35   O  0  1  N  N  N   7.770  14.745   0.059    3.530  -2.244  -1.400  O35   SXM  12  
SXM  N36   N36   N  0  1  N  N  N   7.121  15.459  -1.956    2.211  -1.772   0.320  N36   SXM  13  
SXM  C37   C37   C  0  1  N  N  N   8.202  16.418  -2.187    1.041  -1.646  -0.552  C37   SXM  14  
SXM  C38   C38   C  0  1  N  N  N   8.236  16.942  -3.637   -0.176  -1.242   0.284  C38   SXM  15  
SXM  C39   C39   C  0  1  N  N  N   8.205  15.837  -4.700   -1.380  -1.112  -0.613  C39   SXM  16  
SXM  O40   O40   O  0  1  N  N  N   8.188  14.629  -4.403   -1.275  -1.321  -1.803  O40   SXM  17  
SXM  N41   N41   N  0  1  N  N  N   8.199  16.254  -5.943   -2.573  -0.762  -0.093  N41   SXM  18  
SXM  C42   C42   C  0  1  N  N  N   8.151  15.346  -7.070   -3.743  -0.636  -0.965  C42   SXM  19  
SXM  C43   C43   C  0  1  N  N  N   9.245  15.590  -8.081   -4.960  -0.232  -0.129  C43   SXM  20  
SXM  S1    S1    S  0  1  N  N  N   9.179  14.317  -9.247   -6.406  -0.075  -1.206  S1    SXM  21  
SXM  C1    C1    C  0  1  N  N  N   9.572  12.962  -8.200   -7.590   0.371  -0.052  C1    SXM  22  
SXM  O1    O1    O  0  1  N  N  N  10.225  13.055  -7.126   -7.285   0.485   1.116  O1    SXM  23  
SXM  C2    C2    C  0  1  N  N  N   9.071  11.613  -8.692   -9.010   0.622  -0.488  C2    SXM  24  
SXM  C3    C3    C  0  1  N  N  N   7.553  11.374  -8.651   -9.844   0.996   0.710  C3    SXM  25  
SXM  O3A   O3A   O  0  1  N  N  N   7.102  10.339  -9.203   -9.337   1.054   1.805  O3A   SXM  26  
SXM  O3B   O3B   O  0  1  N  N  N   6.782  12.185  -8.063  -11.151   1.266   0.560  O3B   SXM  27  
SXM  H28   H28   H  0  1  N  N  N   8.150  12.493  -0.293    4.475   0.086  -0.490  H28   SXM  28  
SXM  H28A  H28A  H  0  0  N  N  N   7.423  11.626  -1.695    6.149  -0.516  -0.548  H28A  SXM  29  
SXM  H30   H30   H  0  1  N  N  N   3.940  11.815  -0.538    6.666  -0.310   2.533  H30   SXM  30  
SXM  H30A  H30A  H  0  0  N  N  N   5.050  11.292  -1.850    6.169  -1.991   2.843  H30A  SXM  31  
SXM  H30B  H30B  H  0  0  N  N  N   5.077  10.452  -0.262    7.152  -1.603   1.411  H30B  SXM  32  
SXM  H31   H31   H  0  1  N  N  N   6.628  13.236   1.610    4.412   0.486   2.640  H31   SXM  33  
SXM  H31A  H31A  H  0  0  N  N  N   4.854  12.993   1.465    3.147  -0.123   1.546  H31A  SXM  34  
SXM  H31B  H31B  H  0  0  N  N  N   5.935  11.583   1.729    3.705  -1.125   2.907  H31B  SXM  35  
SXM  H32   H32   H  0  1  N  N  N   4.940  14.258  -0.414    4.279  -2.999   1.538  H32   SXM  36  
SXM  HO33  HO33  H  0  0  N  N  N   5.262  14.522  -2.742    5.951  -2.483  -0.779  HO33  SXM  37  
SXM  HN36  HN36  H  0  0  N  N  N   6.430  15.367  -2.673    2.128  -1.605   1.272  HN36  SXM  38  
SXM  H37   H37   H  0  1  N  N  N   9.159  15.919  -1.976    1.232  -0.884  -1.308  H37   SXM  39  
SXM  H37A  H37A  H  0  0  N  N  N   8.056  17.274  -1.512    0.846  -2.601  -1.039  H37A  SXM  40  
SXM  H38   H38   H  0  1  N  N  N   7.355  17.583  -3.787   -0.366  -2.003   1.040  H38   SXM  41  
SXM  H38A  H38A  H  0  0  N  N  N   9.166  17.515  -3.770    0.019  -0.287   0.771  H38A  SXM  42  
SXM  HN41  HN41  H  0  0  N  N  N   8.229  17.238  -6.120   -2.657  -0.595   0.859  HN41  SXM  43  
SXM  H42   H42   H  0  1  N  N  N   8.258  14.320  -6.689   -3.553   0.126  -1.721  H42   SXM  44  
SXM  H42A  H42A  H  0  0  N  N  N   7.182  15.475  -7.574   -3.938  -1.591  -1.452  H42A  SXM  45  
SXM  H43   H43   H  0  1  N  N  N   9.093  16.561  -8.574   -5.151  -0.993   0.627  H43   SXM  46  
SXM  H43A  H43A  H  0  0  N  N  N  10.225  15.594  -7.582   -4.765   0.723   0.358  H43A  SXM  47  
SXM  H2    H2    H  0  1  N  N  N   9.384  11.517  -9.742   -9.030   1.435  -1.213  H2    SXM  48  
SXM  H2A   H2A   H  0  1  N  N  N   9.535  10.845  -8.055   -9.415  -0.282  -0.945  H2A   SXM  49  
SXM  HO26  HO26  H  0  0  N  Y  N  10.130   9.061  -1.423    4.252   3.246  -0.559  HO26  SXM  50  
SXM  HO23  HO23  H  0  0  N  Y  N  10.734  10.209   0.928    7.135   4.379   0.047  HO23  SXM  51  
SXM  HO3B  HO3B  H  0  0  N  N  N   5.887  11.873  -8.125  -11.645   1.502   1.357  HO3B  SXM  52  
SXM  O10   O10   O  0  1  N  N  N  10.197   9.042   0.051    7.285   1.964  -1.322  O10   SXM  53  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
SXM  P24   O27   SING  N  N   1  
SXM  P24   O23   SING  N  N   2  
SXM  O26   P24   SING  N  N   3  
SXM  O26   HO26  SING  N  N   4  
SXM  O23   HO23  SING  N  N   5  
SXM  C28   O27   SING  N  N   6  
SXM  C28   H28   SING  N  N   7  
SXM  C28   C29   SING  N  N   8  
SXM  C29   C31   SING  N  N   9  
SXM  C30   C29   SING  N  N  10  
SXM  C30   H30   SING  N  N  11  
SXM  C30   H30A  SING  N  N  12  
SXM  C31   H31A  SING  N  N  13  
SXM  C31   H31B  SING  N  N  14  
SXM  C31   H31   SING  N  N  15  
SXM  C32   C29   SING  N  N  16  
SXM  C32   C34   SING  N  N  17  
SXM  C32   H32   SING  N  N  18  
SXM  O33   C32   SING  N  N  19  
SXM  C34   O35   DOUB  N  N  20  
SXM  N36   C34   SING  N  N  21  
SXM  C37   N36   SING  N  N  22  
SXM  C37   H37A  SING  N  N  23  
SXM  C37   H37   SING  N  N  24  
SXM  C38   C37   SING  N  N  25  
SXM  C39   C38   SING  N  N  26  
SXM  C39   O40   DOUB  N  N  27  
SXM  N41   C39   SING  N  N  28  
SXM  C42   N41   SING  N  N  29  
SXM  C42   H42   SING  N  N  30  
SXM  C43   C42   SING  N  N  31  
SXM  C43   H43   SING  N  N  32  
SXM  S1    C43   SING  N  N  33  
SXM  S1    C1    SING  N  N  34  
SXM  C1    O1    DOUB  N  N  35  
SXM  C2    C1    SING  N  N  36  
SXM  C2    C3    SING  N  N  37  
SXM  C2    H2    SING  N  N  38  
SXM  C3    O3B   SING  N  N  39  
SXM  O3A   C3    DOUB  N  N  40  
SXM  O3B   HO3B  SING  N  N  41  
SXM  H28A  C28   SING  N  N  42  
SXM  H30B  C30   SING  N  N  43  
SXM  HO33  O33   SING  N  N  44  
SXM  HN36  N36   SING  N  N  45  
SXM  H38   C38   SING  N  N  46  
SXM  H38A  C38   SING  N  N  47  
SXM  HN41  N41   SING  N  N  48  
SXM  H42A  C42   SING  N  N  49  
SXM  H43A  C43   SING  N  N  50  
SXM  H2A   C2    SING  N  N  51  
SXM  P24   O10   DOUB  N  N  52  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
SXM  SMILES            ACDLabs               10.04  "O=C(SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(O)O)CC(=O)O"  
SXM  SMILES_CANONICAL  CACTVS                3.352  "CC(C)(CO[P](O)(O)=O)[C@H](O)C(=O)NCCC(=O)NCCSC(=O)CC(O)=O"  
SXM  SMILES            CACTVS                3.352  "CC(C)(CO[P](O)(O)=O)[CH](O)C(=O)NCCC(=O)NCCSC(=O)CC(O)=O"  
SXM  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "CC(C)(COP(=O)(O)O)[C@@H](C(=O)NCCC(=O)NCCSC(=O)CC(=O)O)O"  
SXM  SMILES            "OpenEye OEToolkits"  1.7.0  "CC(C)(COP(=O)(O)O)C(C(=O)NCCC(=O)NCCSC(=O)CC(=O)O)O"  
SXM  InChI             InChI                 1.03   "InChI=1S/C14H25N2O10PS/c1-14(2,8-26-27(23,24)25)12(21)13(22)16-4-3-9(17)15-5-6-28-11(20)7-10(18)19/h12,21H,3-8H2,1-2H3,(H,15,17)(H,16,22)(H,18,19)(H2,23,24,25)/t12-/m1/s1"  
SXM  InChIKey          InChI                 1.03   RNFWAFOKCVKQGB-GFCCVEGCSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
SXM  "SYSTEMATIC NAME"  ACDLabs               10.04  "3-{[2-({N-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl]sulfanyl}-3-oxopropanoic acid"  
SXM  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.6.1  "3-[2-[3-[[(2S)-2-hydroxy-3,3-dimethyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethylsulfanyl]-3-oxo-propanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
SXM  "Create component"   2009-03-30  RCSB  
SXM  "Modify descriptor"  2011-06-04  RCSB  
SXM  "Modify synonyms"    2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     SXM
_pdbx_chem_comp_synonyms.name        "THIOMALONIC ACID S-{2-[3-(2-HYDROXY-3,3-DIMETHYL-4-PHOSPHONOOXY-BUTYRYLAMINO)-PROPIONYLAMINO]-ETHYL} ESTER"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
