data_TDJ
#

_chem_comp.id                                   TDJ
_chem_comp.name                                 "[(1,2,3,4,5-eta)-1-(4-{[carboxy(4-carboxy-5-methylidene-5,6-dihydro-2H-1,3-thiazin-2-yl)methyl]amino}-4-oxobutanoyl)cyclopentadienyl][(1,2,3,4,5-eta)-cyclopentadienyl]ruthenium"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C22 H13 N2 O6 Ru S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-03-19
_chem_comp.pdbx_modified_date                   2020-03-27
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       534.483
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    TDJ
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6VNU
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
TDJ  C1   C1   C   0  1  N  N  N   5.281  -1.447  -12.901   5.281  -1.447  -12.901  C1   TDJ   1  
TDJ  C11  C2   C   0  1  N  N  N  14.814   5.118   -9.953  14.814   5.118   -9.953  C11  TDJ   2  
TDJ  C12  C3   C   0  1  N  N  N  14.618   4.332  -11.069  14.618   4.332  -11.069  C12  TDJ   3  
TDJ  C13  C4   C   0  1  N  N  N  13.693   3.347  -10.752  13.693   3.347  -10.752  C13  TDJ   4  
TDJ  C14  C5   C   0  1  N  N  N  13.305   3.535   -9.453  13.305   3.535   -9.453  C14  TDJ   5  
TDJ  C15  C6   C   0  1  N  N  N  13.990   4.610   -8.948  13.990   4.610   -8.948  C15  TDJ   6  
TDJ  C16  C7   C   0  1  N  N  N  11.877   7.339  -10.376  11.877   7.339  -10.376  C16  TDJ   7  
TDJ  C17  C8   C   0  1  N  N  N  11.035   6.419   -9.743  11.035   6.419   -9.743  C17  TDJ   8  
TDJ  C18  C9   C   0  1  N  N  N  10.539   5.529  -10.690  10.539   5.529  -10.690  C18  TDJ   9  
TDJ  C20  C10  C   0  1  N  N  N  11.900   7.028  -11.736  11.900   7.028  -11.736  C20  TDJ  10  
TDJ  C31  C11  C   0  1  N  N  R   5.368   2.392  -14.181   5.368   2.392  -14.181  C31  TDJ  11  
TDJ  C34  C12  C   0  1  N  N  R   5.072   0.962  -14.459   5.072   0.962  -14.459  C34  TDJ  12  
TDJ  O67  O1   O   0  1  N  N  N   3.698   3.729  -13.554   3.698   3.729  -13.554  O67  TDJ  13  
TDJ  C32  C13  C   0  1  N  N  N   4.298   3.270  -14.572   4.298   3.270  -14.572  C32  TDJ  14  
TDJ  S49  S1   S   0  1  N  N  N   6.204  -0.306  -13.903   6.204  -0.306  -13.903  S49  TDJ  15  
TDJ  C50  C14  C   0  1  N  N  N   4.103  -0.774  -12.187   4.103  -0.774  -12.187  C50  TDJ  16  
TDJ  C52  C15  C   0  1  N  N  N   3.814  -1.236  -10.787   3.814  -1.236  -10.787  C52  TDJ  17  
TDJ  C51  C16  C   0  1  N  N  N   3.327   0.152  -12.801   3.327   0.152  -12.801  C51  TDJ  18  
TDJ  C63  C17  C   0  1  N  N  N   1.906   0.352  -12.403   1.906   0.352  -12.403  C63  TDJ  19  
TDJ  O65  O2   O   0  1  N  N  N   1.592   0.738  -11.274   1.592   0.738  -11.274  O65  TDJ  20  
TDJ  O64  O3   O   0  1  N  N  N   1.000   0.138  -13.232   1.000   0.138  -13.232  O64  TDJ  21  
TDJ  N33  N1   N   0  1  N  N  N   3.733   0.895  -13.847   3.733   0.895  -13.847  N33  TDJ  22  
TDJ  N30  N2   N   0  1  N  N  N   6.159   2.796  -13.062   6.159   2.796  -13.062  N30  TDJ  23  
TDJ  C27  C18  C   0  1  N  N  N   7.479   2.732  -12.931   7.479   2.732  -12.931  C27  TDJ  24  
TDJ  O29  O4   O   0  1  N  N  N   8.261   2.311  -13.756   8.261   2.311  -13.756  O29  TDJ  25  
TDJ  C26  C19  C   0  1  N  N  N   7.929   3.271  -11.603   7.929   3.271  -11.603  C26  TDJ  26  
TDJ  C25  C20  C   0  1  N  N  N   9.430   3.415  -11.556   9.430   3.415  -11.556  C25  TDJ  27  
TDJ  C24  C21  C   0  1  N  N  N   9.652   4.365  -10.407   9.652   4.365  -10.407  C24  TDJ  28  
TDJ  O28  O5   O   0  1  N  N  N   9.144   4.209   -9.304   9.144   4.209   -9.304  O28  TDJ  29  
TDJ  RU   RU1  RU  0  0  N  N  N  12.707   5.308  -10.616  12.707   5.308  -10.616  RU   TDJ  30  
TDJ  C19  C22  C   0  1  N  N  N  11.080   5.929  -11.934  11.080   5.929  -11.934  C19  TDJ  31  
TDJ  O1   O6   O   0  1  N  Y  N   3.669   3.199  -15.759   3.669   3.199  -15.759  O1   TDJ  32  
TDJ  H1   H1   H   0  1  N  N  N   4.892  -2.249  -13.545   4.892  -2.249  -13.545  H1   TDJ  33  
TDJ  H2   H2   H   0  1  N  N  N   5.954  -1.878  -12.145   5.954  -1.878  -12.145  H2   TDJ  34  
TDJ  H11  H11  H   0  1  N  N  N   6.080   2.591  -14.996   6.080   2.591  -14.996  H11  TDJ  35  
TDJ  H12  H12  H   0  1  N  N  N   4.979   0.821  -15.546   4.979   0.821  -15.546  H12  TDJ  36  
TDJ  H14  H14  H   0  1  N  N  N   2.972  -0.829  -10.247   2.972  -0.829  -10.247  H14  TDJ  37  
TDJ  H15  H15  H   0  1  N  N  N   4.448  -1.975  -10.321   4.448  -1.975  -10.321  H15  TDJ  38  
TDJ  H17  H17  H   0  1  N  N  N   0.157   0.319  -12.834   0.157   0.319  -12.834  H17  TDJ  39  
TDJ  H18  H18  H   0  1  N  N  N   5.658   3.173  -12.283   5.658   3.173  -12.283  H18  TDJ  40  
TDJ  H19  H19  H   0  1  N  N  N   7.468   4.257  -11.440   7.468   4.256  -11.440  H19  TDJ  41  
TDJ  H20  H20  H   0  1  N  N  N   7.609   2.581  -10.808   7.609   2.581  -10.808  H20  TDJ  42  
TDJ  H21  H21  H   0  1  N  N  N   9.913   2.445  -11.364   9.913   2.445  -11.365  H21  TDJ  43  
TDJ  H22  H22  H   0  1  N  N  N   9.815   3.837  -12.496   9.815   3.837  -12.496  H22  TDJ  44  
TDJ  H24  H24  H   0  1  N  N  N   2.783   3.531  -15.669   2.783   3.530  -15.669  H24  TDJ  45  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
TDJ  C1   S49  SING  N  N   1  
TDJ  C1   C50  SING  N  N   2  
TDJ  C11  C12  SING  N  N   3  
TDJ  C11  C15  SING  N  N   4  
TDJ  C11  RU   SING  N  N   5  
TDJ  C12  C13  SING  N  N   6  
TDJ  C12  RU   SING  N  N   7  
TDJ  C13  C14  SING  N  N   8  
TDJ  C13  RU   SING  N  N   9  
TDJ  C14  C15  SING  N  N  10  
TDJ  C14  RU   SING  N  N  11  
TDJ  C15  RU   SING  N  N  12  
TDJ  C16  C17  SING  N  N  13  
TDJ  C16  C20  SING  N  N  14  
TDJ  C16  RU   SING  N  N  15  
TDJ  C17  C18  SING  N  N  16  
TDJ  C17  RU   SING  N  N  17  
TDJ  C18  C24  SING  N  N  18  
TDJ  C18  RU   SING  N  N  19  
TDJ  C18  C19  SING  N  N  20  
TDJ  C20  RU   SING  N  N  21  
TDJ  C20  C19  SING  N  N  22  
TDJ  C31  C34  SING  N  N  23  
TDJ  C31  C32  SING  N  N  24  
TDJ  C31  N30  SING  N  N  25  
TDJ  C34  S49  SING  N  N  26  
TDJ  C34  N33  SING  N  N  27  
TDJ  O67  C32  DOUB  N  N  28  
TDJ  C50  C52  DOUB  N  N  29  
TDJ  C50  C51  SING  N  N  30  
TDJ  C51  C63  SING  N  N  31  
TDJ  C51  N33  DOUB  N  N  32  
TDJ  C63  O65  DOUB  N  N  33  
TDJ  C63  O64  SING  N  N  34  
TDJ  N30  C27  SING  N  N  35  
TDJ  C27  O29  DOUB  N  N  36  
TDJ  C27  C26  SING  N  N  37  
TDJ  C26  C25  SING  N  N  38  
TDJ  C25  C24  SING  N  N  39  
TDJ  C24  O28  DOUB  N  N  40  
TDJ  RU   C19  SING  N  N  41  
TDJ  C32  O1   SING  N  N  42  
TDJ  C1   H1   SING  N  N  43  
TDJ  C1   H2   SING  N  N  44  
TDJ  C31  H11  SING  N  N  45  
TDJ  C34  H12  SING  N  N  46  
TDJ  C52  H14  SING  N  N  47  
TDJ  C52  H15  SING  N  N  48  
TDJ  O64  H17  SING  N  N  49  
TDJ  N30  H18  SING  N  N  50  
TDJ  C26  H19  SING  N  N  51  
TDJ  C26  H20  SING  N  N  52  
TDJ  C25  H21  SING  N  N  53  
TDJ  C25  H22  SING  N  N  54  
TDJ  O1   H24  SING  N  N  55  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
TDJ  SMILES            ACDLabs               12.01  "C/%12SC(C(C(=O)O)NC(=O)CCC(C9%10C8C7C%11[Ru]6432789(C1C5C4C3C12)C%10%11)=O)N=C(C\%12=C)C(=O)O"  
TDJ  InChI             InChI                 1.03   "InChI=1S/C17H17N2O6S.C5H5.Ru/c1-9-8-26-15(19-13(9)16(22)23)14(17(24)25)18-12(21)7-6-11(20)10-4-2-3-5-10;1-2-4-5-3-1;/h2-5,14-15H,1,6-8H2,(H,18,21)(H,22,23)(H,24,25);1-5H;/t14-,15+;;/m0../s1"  
TDJ  InChIKey          InChI                 1.03   NNOXJZPSFXUGDA-FZMMWMHASA-N  
TDJ  SMILES_CANONICAL  CACTVS                3.385  "OC(=O)[C@@H](NC(=O)CCC(=O)C1([Ru])CCCC1)[C@H]2SCC(=C)C(=N2)C(O)=O.C3CCCC3"  
TDJ  SMILES            CACTVS                3.385  "OC(=O)[CH](NC(=O)CCC(=O)C1([Ru])CCCC1)[CH]2SCC(=C)C(=N2)C(O)=O.C3CCCC3"  
TDJ  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C=C1CS[C@@H](N=C1C(=O)O)[C@@H](C(=O)O)NC(=O)CCC(=O)C23[C]4[Ru]2567891([C]4[C]5[C]63)[C]2[C]7[C]8[C]9[C]12"  
TDJ  SMILES            "OpenEye OEToolkits"  2.0.7  "C=C1CSC(N=C1C(=O)O)C(C(=O)O)NC(=O)CCC(=O)C23[C]4[Ru]2567891([C]4[C]5[C]63)[C]2[C]7[C]8[C]9[C]12"  
#
_pdbx_chem_comp_identifier.comp_id          TDJ
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          ACDLabs
_pdbx_chem_comp_identifier.program_version  12.01
_pdbx_chem_comp_identifier.identifier       "[(1,2,3,4,5-eta)-1-(4-{[carboxy(4-carboxy-5-methylidene-5,6-dihydro-2H-1,3-thiazin-2-yl)methyl]amino}-4-oxobutanoyl)cyclopentadienyl][(1,2,3,4,5-eta)-cyclopentadienyl]ruthenium"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
TDJ  "Create component"    2020-03-19  RCSB  
TDJ  "Modify coordinates"  2020-03-25  RCSB  
TDJ  "Initial release"     2020-04-01  RCSB  
##
