data_TMD
# 
_chem_comp.id                                    TMD 
_chem_comp.name                                  "(6,7-DIHYDRO)4-[(E)-BUTENYL]-4,N-DIMETHYL-THREONINE" 
_chem_comp.type                                  "L-PEPTIDE LINKING" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C10 H21 N O3" 
_chem_comp.mon_nstd_parent_comp_id               THR 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        203.279 
_chem_comp.one_letter_code                       T 
_chem_comp.three_letter_code                     TMD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1CWK 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
TMD N    N    N 0 1 N N N 5.547 34.654 19.787 -1.138 -0.952 -1.746 N    TMD 1  
TMD CN   CN   C 0 1 N N N 4.985 36.042 19.966 -2.396 -0.580 -2.408 CN   TMD 2  
TMD CA   CA   C 0 1 N N S 6.748 34.431 18.972 -0.317 0.264  -1.685 CA   TMD 3  
TMD C    C    C 0 1 N N N 8.007 35.183 19.432 0.531  0.360  -2.926 C    TMD 4  
TMD O    O    O 0 1 N N N 8.005 35.998 20.369 0.848  1.443  -3.360 O    TMD 5  
TMD OXT  OXT  O 0 1 N Y N 9.153 34.866 18.802 0.936  -0.756 -3.551 OXT  TMD 6  
TMD CB   CB   C 0 1 N N R 6.514 34.768 17.437 0.585  0.209  -0.452 CB   TMD 7  
TMD CD1  CD1  C 0 1 N N N 5.120 34.524 15.290 0.626  0.057  2.041  CD1  TMD 8  
TMD CD2  CD2  C 0 1 N N N 5.233 32.641 16.941 -1.188 1.337  0.897  CD2  TMD 9  
TMD CE   CE   C 0 1 N N N 6.293 34.080 14.432 -0.235 -0.040 3.301  CE   TMD 10 
TMD CZ   CZ   C 0 1 N N N 6.251 34.581 12.997 0.667  -0.095 4.534  CZ   TMD 11 
TMD CH   CH   C 0 1 N N N 7.549 34.098 12.272 -0.195 -0.192 5.794  CH   TMD 12 
TMD OG2  OG2  O 0 1 N N N 6.411 36.186 17.358 1.437  -0.935 -0.536 OG2  TMD 13 
TMD CG1  CG1  C 0 1 N N R 5.222 34.151 16.796 -0.276 0.112  0.807  CG1  TMD 14 
TMD H    HN   H 0 1 N N N 4.804 34.053 19.430 -0.662 -1.591 -2.366 H    TMD 15 
TMD HN1  1HN  H 0 1 N N N 4.073 36.211 20.584 -3.042 -1.455 -2.477 HN1  TMD 16 
TMD HN2  2HN  H 0 1 N N N 5.797 36.698 20.355 -2.896 0.195  -1.828 HN2  TMD 17 
TMD HN3  3HN  H 0 1 N N N 4.806 36.478 18.955 -2.183 -0.205 -3.409 HN3  TMD 18 
TMD HA   HA   H 0 1 N N N 6.934 33.341 19.114 -0.967 1.137  -1.621 HA   TMD 19 
TMD HXT  HXT  H 0 1 N Y N 9.931 35.330 19.086 1.481  -0.695 -4.347 HXT  TMD 20 
TMD HB   HB   H 0 1 N N N 7.363 34.324 16.867 1.194  1.112  -0.407 HB   TMD 21 
TMD HD13 1HD1 H 0 0 N N N 4.955 35.621 15.176 1.235  0.960  2.086  HD13 TMD 22 
TMD HD12 2HD1 H 0 0 N N N 4.165 34.138 14.863 1.276  -0.816 1.977  HD12 TMD 23 
TMD HD21 1HD2 H 0 0 N N N 4.314 32.202 16.485 -0.579 2.240  0.942  HD21 TMD 24 
TMD HD22 2HD2 H 0 0 N N N 6.162 32.189 16.521 -1.831 1.377  0.018  HD22 TMD 25 
TMD HD23 3HD2 H 0 0 N N N 5.361 32.325 18.002 -1.802 1.268  1.795  HD23 TMD 26 
TMD HE2  1HE  H 0 1 N N N 7.256 34.365 14.914 -0.844 -0.943 3.255  HE2  TMD 27 
TMD HE3  2HE  H 0 1 N N N 6.390 32.969 14.452 -0.885 0.833  3.365  HE3  TMD 28 
TMD HZ2  1HZ  H 0 1 N N N 5.321 34.275 12.462 1.276  0.807  4.579  HZ2  TMD 29 
TMD HZ3  2HZ  H 0 1 N N N 6.107 35.684 12.931 1.316  -0.968 4.470  HZ3  TMD 30 
TMD HH1  1HH  H 0 1 N N N 7.518 34.465 11.219 0.448  -0.232 6.673  HH1  TMD 31 
TMD HH2  2HH  H 0 1 N N N 8.478 34.403 12.806 -0.844 0.680  5.858  HH2  TMD 32 
TMD HH3  3HH  H 0 1 N N N 7.692 32.994 12.337 -0.803 -1.095 5.749  HH3  TMD 33 
TMD HG2  HO2  H 0 1 N N N 6.271 36.387 16.440 0.860  -1.710 -0.574 HG2  TMD 34 
TMD HG1  HG1  H 0 1 N N N 4.338 34.569 17.332 -0.885 -0.790 0.762  HG1  TMD 35 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
TMD N   CN   SING N N 1  
TMD N   CA   SING N N 2  
TMD N   H    SING N N 3  
TMD CN  HN1  SING N N 4  
TMD CN  HN2  SING N N 5  
TMD CN  HN3  SING N N 6  
TMD CA  C    SING N N 7  
TMD CA  CB   SING N N 8  
TMD CA  HA   SING N N 9  
TMD C   O    DOUB N N 10 
TMD C   OXT  SING N N 11 
TMD OXT HXT  SING N N 12 
TMD CB  OG2  SING N N 13 
TMD CB  CG1  SING N N 14 
TMD CB  HB   SING N N 15 
TMD CD1 CE   SING N N 16 
TMD CD1 CG1  SING N N 17 
TMD CD1 HD13 SING N N 18 
TMD CD1 HD12 SING N N 19 
TMD CD2 CG1  SING N N 20 
TMD CD2 HD21 SING N N 21 
TMD CD2 HD22 SING N N 22 
TMD CD2 HD23 SING N N 23 
TMD CE  CZ   SING N N 24 
TMD CE  HE2  SING N N 25 
TMD CE  HE3  SING N N 26 
TMD CZ  CH   SING N N 27 
TMD CZ  HZ2  SING N N 28 
TMD CZ  HZ3  SING N N 29 
TMD CH  HH1  SING N N 30 
TMD CH  HH2  SING N N 31 
TMD CH  HH3  SING N N 32 
TMD OG2 HG2  SING N N 33 
TMD CG1 HG1  SING N N 34 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
TMD SMILES           ACDLabs              10.04 "O=C(O)C(NC)C(O)C(CCCC)C"                                                                                
TMD SMILES_CANONICAL CACTVS               3.341 "CCCC[C@@H](C)[C@@H](O)[C@H](NC)C(O)=O"                                                                  
TMD SMILES           CACTVS               3.341 "CCCC[CH](C)[CH](O)[CH](NC)C(O)=O"                                                                       
TMD SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CCCC[C@@H](C)[C@H]([C@@H](C(=O)O)NC)O"                                                                  
TMD SMILES           "OpenEye OEToolkits" 1.5.0 "CCCCC(C)C(C(C(=O)O)NC)O"                                                                                
TMD InChI            InChI                1.03  "InChI=1S/C10H21NO3/c1-4-5-6-7(2)9(12)8(11-3)10(13)14/h7-9,11-12H,4-6H2,1-3H3,(H,13,14)/t7-,8+,9-/m1/s1" 
TMD InChIKey         InChI                1.03  HGBRSLPVPAQWHK-HRDYMLBCSA-N                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
TMD "SYSTEMATIC NAME" ACDLabs              10.04 "4-butyl-2,4,5-trideoxy-2-(methylamino)-L-xylonic acid"     
TMD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S,3R,4R)-3-hydroxy-4-methyl-2-methylamino-octanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
TMD "Create component"  1999-07-08 EBI  
TMD "Modify descriptor" 2011-06-04 RCSB 
# 
