data_V3M
#

_chem_comp.id                                   V3M
_chem_comp.name                                 2-deoxy-2-fluoro-alpha-D-arabinofuranose
_chem_comp.type                                 "D-saccharide, alpha linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C5 H9 F O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-06-20
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       152.121
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    V3M
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1S2D
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
V3M  O1   O1   O  0  1  N  Y  N  -1.536   -6.876  -18.073  -1.575   2.131   0.463  O1   V3M   1  
V3M  O5   O5   O  0  1  N  N  N  -1.305  -10.567  -21.699   3.180   0.520  -0.275  O5   V3M   2  
V3M  C5   C5   C  0  1  N  N  N  -1.752   -9.229  -21.970   2.040  -0.216  -0.725  C5   V3M   3  
V3M  C4   C4   C  0  1  N  N  R  -2.557   -8.695  -20.799   1.017  -0.315   0.407  C4   V3M   4  
V3M  O4   O4   O  0  1  N  N  N  -1.843   -8.509  -19.565   0.478   0.986   0.695  O4   V3M   5  
V3M  C1   C1   C  0  1  N  N  S  -1.413   -7.148  -19.418  -0.722   1.130  -0.095  C1   V3M   6  
V3M  C2   C2   C  0  1  N  N  S  -2.408   -6.319  -20.208  -1.386  -0.268  -0.001  C2   V3M   7  
V3M  F2   F2   F  0  1  N  N  N  -1.735   -5.437  -21.051  -2.218  -0.501  -1.101  F2   V3M   8  
V3M  C3   C3   C  0  1  N  N  R  -3.158   -7.355  -21.027  -0.159  -1.212  -0.026  C3   V3M   9  
V3M  O3   O3   O  0  1  N  N  N  -4.322   -7.394  -20.560  -0.336  -2.286   0.899  O3   V3M  10  
V3M  HO5  HO5  H  0  1  N  Y  N  -0.803  -10.890  -22.438   3.871   0.622  -0.943  HO5  V3M  11  
V3M  H51  H51  H  0  1  N  N  N  -0.879   -8.581  -22.135   1.592   0.294  -1.577  H51  V3M  12  
V3M  H52  H52  H  0  1  N  N  N  -2.382   -9.233  -22.872   2.350  -1.218  -1.024  H52  V3M  13  
V3M  H4   H4   H  0  1  N  N  N  -3.379   -9.403  -20.618   1.489  -0.728   1.299  H4   V3M  14  
V3M  H1   H1   H  0  1  N  N  N  -0.391   -6.995  -19.795  -0.475   1.371  -1.129  H1   V3M  15  
V3M  H2   H2   H  0  1  N  N  N  -3.098   -5.799  -19.527  -1.939  -0.373   0.933  H2   V3M  16  
V3M  H3   H3   H  0  1  N  N  N  -3.109   -7.093  -22.094   0.005  -1.597  -1.032  H3   V3M  17  
V3M  HO3  HO3  H  0  1  N  Y  N  -4.743   -6.552  -20.687  -1.063  -2.883   0.675  HO3  V3M  18  
V3M  HO1  HO1  H  0  1  N  Y  N  -1.265   -5.981  -17.904  -1.180   3.013   0.492  HO1  V3M  19  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
V3M  O1  C1   SING  N  N   1  
V3M  O5  C5   SING  N  N   2  
V3M  C5  C4   SING  N  N   3  
V3M  C4  C3   SING  N  N   4  
V3M  C4  O4   SING  N  N   5  
V3M  O4  C1   SING  N  N   6  
V3M  C1  C2   SING  N  N   7  
V3M  C2  C3   SING  N  N   8  
V3M  C2  F2   SING  N  N   9  
V3M  C3  O3   SING  N  N  10  
V3M  O5  HO5  SING  N  N  11  
V3M  C5  H51  SING  N  N  12  
V3M  C5  H52  SING  N  N  13  
V3M  C4  H4   SING  N  N  14  
V3M  C1  H1   SING  N  N  15  
V3M  C2  H2   SING  N  N  16  
V3M  C3  H3   SING  N  N  17  
V3M  O3  HO3  SING  N  N  18  
V3M  O1  HO1  SING  N  N  19  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
V3M  SMILES            ACDLabs               12.01  "OC1OC(CO)C(C1F)O"  
V3M  InChI             InChI                 1.03   "InChI=1S/C5H9FO4/c6-3-4(8)2(1-7)10-5(3)9/h2-5,7-9H,1H2/t2-,3+,4-,5+/m1/s1"  
V3M  InChIKey          InChI                 1.03   RTUWTJAKZMHWBQ-LECHCGJUSA-N  
V3M  SMILES_CANONICAL  CACTVS                3.385  "OC[C@H]1O[C@H](O)[C@@H](F)[C@@H]1O"  
V3M  SMILES            CACTVS                3.385  "OC[CH]1O[CH](O)[CH](F)[CH]1O"  
V3M  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C([C@@H]1[C@H]([C@@H]([C@H](O1)O)F)O)O"  
V3M  SMILES            "OpenEye OEToolkits"  2.0.7  "C(C1C(C(C(O1)O)F)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
V3M  "SYSTEMATIC NAME"  ACDLabs               12.01  2-deoxy-2-fluoro-alpha-D-arabinofuranose  
V3M  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(2~{S},3~{S},4~{R},5~{R})-3-fluoranyl-5-(hydroxymethyl)oxolane-2,4-diol"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
V3M  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
V3M  "CARBOHYDRATE RING"                    furanose  PDB  ?  
V3M  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
V3M  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
V3M  "Create component"  2020-06-20  RCSB  
V3M  "Initial release"   2020-07-01  RCSB  
##
