data_V7D
#

_chem_comp.id                                   V7D
_chem_comp.name                                 "2,2-diamino-4-[(S)-({(2S)-1-[(carboxymethyl)amino]-1-oxobutan-2-yl}oxy)(hydroxy)phosphanyl]butanoic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C16 H24 N3 O7 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-07-13
_chem_comp.pdbx_modified_date                   2021-01-12
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       401.351
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    V7D
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6XPB
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
V7D  OAC  O1   O  0  1  N  N  N  -25.229  -25.330   -6.859  -1.799  -3.421   1.231  OAC  V7D   1  
V7D  CAA  C1   C  0  1  N  N  N  -25.928  -25.776   -7.804  -0.494  -3.607   0.975  CAA  V7D   2  
V7D  OAD  O2   O  0  1  N  N  N  -26.753  -25.152   -8.518   0.105  -4.505   1.516  OAD  V7D   3  
V7D  CAB  C2   C  0  1  N  N  N  -25.574  -27.181   -8.271   0.222  -2.694   0.013  CAB  V7D   4  
V7D  NAE  N1   N  0  1  N  N  N  -26.787  -27.790   -8.804   1.504  -3.299  -0.372  NAE  V7D   5  
V7D  NAF  N2   N  0  1  N  N  N  -25.376  -28.128   -7.164  -0.606  -2.499  -1.185  NAF  V7D   6  
V7D  CAG  C3   C  0  1  N  N  N  -24.393  -27.098   -9.276   0.476  -1.343   0.684  CAG  V7D   7  
V7D  CAH  C4   C  0  1  N  N  N  -23.915  -28.527   -9.612   1.203  -0.417  -0.293  CAH  V7D   8  
V7D  PAI  P1   P  0  1  N  N  R  -22.513  -28.377  -10.718   1.506   1.193   0.507  PAI  V7D   9  
V7D  OAK  O3   O  0  1  N  Y  N  -21.319  -27.611  -10.119   2.598   1.854  -0.475  OAK  V7D  10  
V7D  OAL  O4   O  0  1  N  N  N  -22.131  -29.899  -11.170   0.174   2.012   0.125  OAL  V7D  11  
V7D  CAM  C5   C  0  1  N  N  S  -20.968  -30.574  -10.642  -1.111   1.706   0.671  CAM  V7D  12  
V7D  CAP  C6   C  0  1  N  N  N  -21.194  -32.100  -10.758  -1.646   2.924   1.428  CAP  V7D  13  
V7D  CAQ  C7   C  0  1  N  N  N  -22.415  -32.464   -9.889  -0.750   3.208   2.635  CAQ  V7D  14  
V7D  CAZ  C8   C  0  1  N  N  N  -19.747  -30.257  -11.512  -2.060   1.352  -0.444  CAZ  V7D  15  
V7D  OAX  O5   O  0  1  N  N  N  -19.871  -29.797  -12.658  -1.674   1.360  -1.594  OAX  V7D  16  
V7D  NBA  N3   N  0  1  N  N  N  -18.565  -30.604  -10.971  -3.337   1.026  -0.164  NBA  V7D  17  
V7D  CBA  C9   C  0  1  N  N  N  -17.307  -30.391  -11.755  -4.260   0.681  -1.249  CBA  V7D  18  
V7D  CBC  C10  C  0  1  N  N  N  -17.103  -31.620  -12.660  -5.615   0.359  -0.673  CBC  V7D  19  
V7D  OBC  O6   O  0  1  N  N  N  -18.112  -32.336  -12.883  -6.625   0.013  -1.486  OBC  V7D  20  
V7D  OBD  O7   O  0  1  N  N  N  -15.951  -31.819  -13.108  -5.791   0.412   0.521  OBD  V7D  21  
V7D  H1   H1   H  0  1  N  N  N  -25.410  -24.405   -6.740  -2.215  -4.031   1.855  H1   V7D  22  
V7D  H2   H2   H  0  1  N  N  N  -27.493  -27.804   -8.096   1.975  -2.738  -1.066  H2   V7D  23  
V7D  H5   H5   H  0  1  N  N  N  -26.179  -28.118   -6.569  -1.494  -2.084  -0.946  H5   V7D  24  
V7D  H14  H14  H  0  1  N  N  N  -21.387  -32.371  -11.807  -1.650   3.790   0.766  H14  V7D  25  
V7D  H15  H15  H  0  1  N  N  N  -20.305  -32.638  -10.398  -2.661   2.723   1.769  H15  V7D  26  
V7D  H16  H16  H  0  1  N  N  N  -22.601  -33.546   -9.952  -1.131   4.076   3.174  H16  V7D  27  
V7D  H17  H17  H  0  1  N  N  N  -22.217  -32.186   -8.843  -0.746   2.342   3.297  H17  V7D  28  
V7D  H18  H18  H  0  1  N  N  N  -23.299  -31.919  -10.252   0.266   3.410   2.294  H18  V7D  29  
V7D  H19  H19  H  0  1  N  N  N  -18.527  -31.001  -10.054  -3.646   1.019   0.755  H19  V7D  30  
V7D  H20  H20  H  0  1  N  N  N  -16.453  -30.285  -11.070  -4.347   1.524  -1.933  H20  V7D  31  
V7D  H21  H21  H  0  1  N  N  N  -17.399  -29.484  -12.371  -3.879  -0.187  -1.788  H21  V7D  32  
V7D  H22  H22  H  0  1  N  N  N  -17.869  -33.059  -13.449  -7.475  -0.185  -1.070  H22  V7D  33  
V7D  C1   C11  C  0  1  Y  Y  N        ?        ?        ?   3.784   1.192  -0.508  C1   V7D  34  
V7D  C2   C12  C  0  1  Y  Y  N        ?        ?        ?   3.987   0.175  -1.430  C2   V7D  35  
V7D  C3   C13  C  0  1  Y  Y  N        ?        ?        ?   5.194  -0.496  -1.462  C3   V7D  36  
V7D  C4   C14  C  0  1  Y  Y  N        ?        ?        ?   6.199  -0.157  -0.575  C4   V7D  37  
V7D  C5   C15  C  0  1  Y  Y  N        ?        ?        ?   5.999   0.855   0.345  C5   V7D  38  
V7D  C6   C16  C  0  1  Y  N  N        ?        ?        ?   4.796   1.534   0.377  C6   V7D  39  
V7D  H3   H3   H  0  1  N  N  N  -27.111  -27.258   -9.587   2.092  -3.444   0.435  H3   V7D  40  
V7D  H4   H4   H  0  1  N  N  N  -25.246  -29.049   -7.532  -0.120  -1.943  -1.873  H4   V7D  41  
V7D  H6   H6   H  0  1  N  N  N  -23.566  -26.529   -8.826  -0.475  -0.895   0.969  H6   V7D  42  
V7D  H7   H7   H  0  1  N  N  N  -24.727  -26.595  -10.196   1.090  -1.489   1.572  H7   V7D  43  
V7D  H8   H8   H  0  1  N  N  N  -24.723  -29.088  -10.104   2.155  -0.866  -0.579  H8   V7D  44  
V7D  H9   H9   H  0  1  N  N  N  -23.614  -29.049   -8.692   0.589  -0.272  -1.182  H9   V7D  45  
V7D  H10  H10  H  0  1  N  N  N  -20.776  -30.296   -9.595  -1.023   0.863   1.356  H10  V7D  46  
V7D  H11  H11  H  0  1  N  N  N        ?        ?        ?   3.202  -0.090  -2.123  H11  V7D  47  
V7D  H12  H12  H  0  1  N  N  N        ?        ?        ?   5.352  -1.288  -2.180  H12  V7D  48  
V7D  H13  H13  H  0  1  N  N  N        ?        ?        ?   7.142  -0.683  -0.601  H13  V7D  49  
V7D  H23  H23  H  0  1  N  N  N        ?        ?        ?   6.785   1.118   1.037  H23  V7D  50  
V7D  H24  H24  H  0  1  N  N  N        ?        ?        ?   4.641   2.325   1.096  H24  V7D  51  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
V7D  OBD  CBC  DOUB  N  N   1  
V7D  OBC  CBC  SING  N  N   2  
V7D  CBC  CBA  SING  N  N   3  
V7D  OAX  CAZ  DOUB  N  N   4  
V7D  CBA  NBA  SING  N  N   5  
V7D  CAZ  NBA  SING  N  N   6  
V7D  CAZ  CAM  SING  N  N   7  
V7D  OAL  PAI  SING  N  N   8  
V7D  OAL  CAM  SING  N  N   9  
V7D  CAP  CAM  SING  N  N  10  
V7D  CAP  CAQ  SING  N  N  11  
V7D  PAI  OAK  SING  N  N  12  
V7D  PAI  CAH  SING  N  N  13  
V7D  CAH  CAG  SING  N  N  14  
V7D  CAG  CAB  SING  N  N  15  
V7D  NAE  CAB  SING  N  N  16  
V7D  OAD  CAA  DOUB  N  N  17  
V7D  CAB  CAA  SING  N  N  18  
V7D  CAB  NAF  SING  N  N  19  
V7D  CAA  OAC  SING  N  N  20  
V7D  OAC  H1   SING  N  N  21  
V7D  NAE  H2   SING  N  N  22  
V7D  NAF  H5   SING  N  N  23  
V7D  CAP  H14  SING  N  N  24  
V7D  CAP  H15  SING  N  N  25  
V7D  CAQ  H16  SING  N  N  26  
V7D  CAQ  H17  SING  N  N  27  
V7D  CAQ  H18  SING  N  N  28  
V7D  NBA  H19  SING  N  N  29  
V7D  CBA  H20  SING  N  N  30  
V7D  CBA  H21  SING  N  N  31  
V7D  OBC  H22  SING  N  N  32  
V7D  OAK  C1   SING  N  N  33  
V7D  C1   C2   SING  Y  N  34  
V7D  C2   C3   DOUB  Y  N  35  
V7D  C3   C4   SING  Y  N  36  
V7D  C4   C5   DOUB  Y  N  37  
V7D  C5   C6   SING  Y  N  38  
V7D  C6   C1   DOUB  Y  N  39  
V7D  NAE  H3   SING  N  N  40  
V7D  NAF  H4   SING  N  N  41  
V7D  CAG  H6   SING  N  N  42  
V7D  CAG  H7   SING  N  N  43  
V7D  CAH  H8   SING  N  N  44  
V7D  CAH  H9   SING  N  N  45  
V7D  CAM  H10  SING  N  N  46  
V7D  C2   H11  SING  N  N  47  
V7D  C3   H12  SING  N  N  48  
V7D  C4   H13  SING  N  N  49  
V7D  C5   H23  SING  N  N  50  
V7D  C6   H24  SING  N  N  51  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
V7D  SMILES            ACDLabs               12.01  "OC(=O)C(N)(N)CCP(Oc1ccccc1)OC(CC)C(NCC(O)=O)=O"  
V7D  InChI             InChI                 1.03   "InChI=1S/C16H24N3O7P/c1-2-12(14(22)19-10-13(20)21)26-27(9-8-16(17,18)15(23)24)25-11-6-4-3-5-7-11/h3-7,12H,2,8-10,17-18H2,1H3,(H,19,22)(H,20,21)(H,23,24)/t12-,27-/m0/s1"  
V7D  InChIKey          InChI                 1.03   TVQHRKKZDSLIPL-JWNZJDHWSA-N  
V7D  SMILES_CANONICAL  CACTVS                3.385  "CC[C@H](O[P@@](CCC(N)(N)C(O)=O)Oc1ccccc1)C(=O)NCC(O)=O"  
V7D  SMILES            CACTVS                3.385  "CC[CH](O[P](CCC(N)(N)C(O)=O)Oc1ccccc1)C(=O)NCC(O)=O"  
V7D  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CCC(C(=O)NCC(=O)O)O[P@@](CCC(C(=O)O)(N)N)Oc1ccccc1"  
V7D  SMILES            "OpenEye OEToolkits"  2.0.7  "CCC(C(=O)NCC(=O)O)OP(CCC(C(=O)O)(N)N)Oc1ccccc1"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
V7D  "SYSTEMATIC NAME"  ACDLabs               12.01  "2,2-diamino-4-[(R)-({(2S)-1-[(carboxymethyl)amino]-1-oxobutan-2-yl}oxy)(phenoxy)phosphanyl]butanoic acid"  
V7D  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "2,2-bis(azanyl)-4-[[1-(2-hydroxy-2-oxoethylamino)-1-oxidanylidene-butan-2-yl]oxy-phenoxy-phosphanyl]butanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
V7D  "Create component"   2020-07-13  RCSB  
V7D  "Initial release"    2020-11-25  RCSB  
V7D  "Modify descriptor"  2021-01-12  RCSB  
##
