data_V9M
#

_chem_comp.id                                   V9M
_chem_comp.name                                 "(3R)-N-[(1S)-1-carboxy-2-methylpropyl]-N,3,5,5-tetramethylhexan-1-aminium"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C15 H32 N O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   1
_chem_comp.pdbx_initial_date                    2020-07-21
_chem_comp.pdbx_modified_date                   2020-09-11
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       258.420
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    V9M
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7JFR
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
V9M  C     C1   C  0  1  N  N  N   2.912  41.442  16.580   2.695   1.354  -0.089  C     V9M   1  
V9M  CA    C2   C  0  1  N  N  S   2.448  40.340  17.542   2.735  -0.081   0.371  CA    V9M   2  
V9M  CB    C3   C  0  1  N  N  N   2.666  40.739  18.992   3.995  -0.756  -0.173  CB    V9M   3  
V9M  CG1   C4   C  0  1  N  N  N   4.142  41.128  19.336   5.232  -0.107   0.451  CG1   V9M   4  
V9M  N     N1   N  1  1  N  N  N   3.009  39.062  17.160   1.547  -0.788  -0.126  N     V9M   5  
V9M  C40   C5   C  0  1  N  N  N   2.153  38.044  17.721   0.337  -0.089   0.327  C40   V9M   6  
V9M  C42   C6   C  0  1  N  N  N   2.796  37.243  18.720  -0.900  -0.888  -0.092  C42   V9M   7  
V9M  C43   C7   C  0  1  N  N  R   1.855  36.349  19.376  -2.160  -0.161   0.379  C43   V9M   8  
V9M  C44   C8   C  0  1  N  N  N   0.939  37.081  20.248  -3.397  -0.892  -0.145  C44   V9M   9  
V9M  C45   C9   C  0  1  N  N  N  -0.515  37.095  20.105  -4.578   0.079  -0.203  C45   V9M  10  
V9M  C46   C10  C  0  1  N  N  N  -1.137  35.819  20.347  -4.253   1.220  -1.170  C46   V9M  11  
V9M  C47   C11  C  0  1  N  N  N  -1.033  37.666  18.893  -5.825  -0.662  -0.689  C47   V9M  12  
V9M  C48   C12  C  0  1  N  N  N  -0.968  37.953  21.165  -4.836   0.652   1.192  C48   V9M  13  
V9M  C49   C13  C  0  1  N  N  N   1.201  35.432  18.482  -2.193  -0.136   1.909  C49   V9M  14  
V9M  O     O1   O  0  1  N  N  N   4.068  41.756  16.420   1.868   1.706  -0.897  O     V9M  15  
V9M  C54   C14  C  0  1  N  N  N   3.024  38.934  15.694   1.574  -0.820  -1.594  C54   V9M  16  
V9M  CG2   C15  C  0  1  N  N  N   1.835  41.865  19.313   3.968  -2.245   0.178  CG2   V9M  17  
V9M  OXT   O2   O  0  1  N  Y  N   1.843  42.077  15.847   3.574   2.241   0.401  OXT   V9M  18  
V9M  HA    H1   H  0  1  N  N  N   1.359  40.263  17.408   2.748  -0.112   1.461  HA    V9M  19  
V9M  HB    H2   H  0  1  N  N  N   2.387  39.887  19.629   4.031  -0.639  -1.256  HB    V9M  20  
V9M  HG13  H3   H  0  0  N  N  N   4.211  41.402  20.399   5.196  -0.224   1.534  HG13  V9M  21  
V9M  HG11  H4   H  0  0  N  N  N   4.803  40.272  19.134   6.130  -0.588   0.064  HG11  V9M  22  
V9M  HG12  H5   H  0  0  N  N  N   4.450  41.983  18.716   5.251   0.954   0.201  HG12  V9M  23  
V9M  HN    H6   H  0  1  N  N  N   3.938  38.971  17.519   1.544  -1.732   0.231  HN    V9M  24  
V9M  H401  H7   H  0  0  N  N  N   1.281  38.535  18.177   0.357   0.007   1.412  H401  V9M  25  
V9M  H402  H8   H  0  0  N  N  N   1.818  37.384  16.908   0.299   0.902  -0.125  H402  V9M  26  
V9M  H422  H9   H  0  0  N  N  N   3.585  36.643  18.243  -0.920  -0.984  -1.177  H422  V9M  27  
V9M  H421  H10  H  0  0  N  N  N   3.244  37.906  19.475  -0.862  -1.879   0.360  H421  V9M  28  
V9M  H431  H11  H  0  0  N  N  N   2.463  35.725  20.048  -2.154   0.861  -0.001  H431  V9M  29  
V9M  H442  H12  H  0  0  N  N  N   1.131  36.701  21.262  -3.195  -1.277  -1.145  H442  V9M  30  
V9M  H441  H13  H  0  0  N  N  N   1.251  38.134  20.185  -3.640  -1.720   0.521  H441  V9M  31  
V9M  H463  H14  H  0  0  N  N  N  -0.737  35.386  21.276  -4.069   0.812  -2.164  H463  V9M  32  
V9M  H462  H15  H  0  0  N  N  N  -2.224  35.954  20.444  -5.095   1.912  -1.211  H462  V9M  33  
V9M  H461  H16  H  0  0  N  N  N  -0.925  35.142  19.506  -3.365   1.748  -0.824  H461  V9M  34  
V9M  H472  H17  H  0  0  N  N  N  -2.132  37.618  18.905  -6.056  -1.474  -0.000  H472  V9M  35  
V9M  H473  H18  H  0  0  N  N  N  -0.713  38.716  18.816  -6.666   0.030  -0.730  H473  V9M  36  
V9M  H471  H19  H  0  0  N  N  N  -0.651  37.102  18.029  -5.641  -1.069  -1.683  H471  V9M  37  
V9M  H482  H20  H  0  0  N  N  N  -0.603  37.569  22.129  -4.022   1.323   1.466  H482  V9M  38  
V9M  H483  H21  H  0  0  N  N  N  -0.580  38.970  21.005  -5.777   1.203   1.190  H483  V9M  39  
V9M  H481  H22  H  0  0  N  N  N  -2.068  37.977  21.173  -4.894  -0.163   1.914  H481  V9M  40  
V9M  H493  H23  H  0  0  N  N  N   0.509  34.794  19.052  -3.139   0.289   2.245  H493  V9M  41  
V9M  H491  H24  H  0  0  N  N  N   0.638  35.997  17.724  -2.095  -1.152   2.291  H491  V9M  42  
V9M  H492  H25  H  0  0  N  N  N   1.955  34.803  17.986  -1.369   0.474   2.280  H492  V9M  43  
V9M  H542  H26  H  0  0  N  N  N   3.452  37.960  15.415   0.654  -1.271  -1.965  H542  V9M  44  
V9M  H543  H27  H  0  0  N  N  N   1.996  39.007  15.309   1.661   0.197  -1.978  H543  V9M  45  
V9M  H541  H28  H  0  0  N  N  N   3.635  39.740  15.262   2.428  -1.408  -1.929  H541  V9M  46  
V9M  HG21  H29  H  0  0  N  N  N   1.995  42.152  20.363   3.049  -2.691  -0.201  HG21  V9M  47  
V9M  HG23  H30  H  0  0  N  N  N   2.094  42.710  18.659   4.826  -2.741  -0.276  HG23  V9M  48  
V9M  HG22  H31  H  0  0  N  N  N   0.779  41.596  19.163   4.011  -2.364   1.261  HG22  V9M  49  
V9M  HXT   H32  H  0  1  N  N  N   2.205  42.735  15.265   3.510   3.149   0.076  HXT   V9M  50  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
V9M  C54  N     SING  N  N   1  
V9M  O    C     DOUB  N  N   2  
V9M  C    CA    SING  N  N   3  
V9M  N    CA    SING  N  N   4  
V9M  N    C40   SING  N  N   5  
V9M  CA   CB    SING  N  N   6  
V9M  C40  C42   SING  N  N   7  
V9M  C49  C43   SING  N  N   8  
V9M  C42  C43   SING  N  N   9  
V9M  C47  C45   SING  N  N  10  
V9M  CB   CG2   SING  N  N  11  
V9M  CB   CG1   SING  N  N  12  
V9M  C43  C44   SING  N  N  13  
V9M  C45  C44   SING  N  N  14  
V9M  C45  C46   SING  N  N  15  
V9M  C45  C48   SING  N  N  16  
V9M  C    OXT   SING  N  N  17  
V9M  CA   HA    SING  N  N  18  
V9M  CB   HB    SING  N  N  19  
V9M  CG1  HG13  SING  N  N  20  
V9M  CG1  HG11  SING  N  N  21  
V9M  CG1  HG12  SING  N  N  22  
V9M  N    HN    SING  N  N  23  
V9M  C40  H401  SING  N  N  24  
V9M  C40  H402  SING  N  N  25  
V9M  C42  H422  SING  N  N  26  
V9M  C42  H421  SING  N  N  27  
V9M  C43  H431  SING  N  N  28  
V9M  C44  H442  SING  N  N  29  
V9M  C44  H441  SING  N  N  30  
V9M  C46  H463  SING  N  N  31  
V9M  C46  H462  SING  N  N  32  
V9M  C46  H461  SING  N  N  33  
V9M  C47  H472  SING  N  N  34  
V9M  C47  H473  SING  N  N  35  
V9M  C47  H471  SING  N  N  36  
V9M  C48  H482  SING  N  N  37  
V9M  C48  H483  SING  N  N  38  
V9M  C48  H481  SING  N  N  39  
V9M  C49  H493  SING  N  N  40  
V9M  C49  H491  SING  N  N  41  
V9M  C49  H492  SING  N  N  42  
V9M  C54  H542  SING  N  N  43  
V9M  C54  H543  SING  N  N  44  
V9M  C54  H541  SING  N  N  45  
V9M  CG2  HG21  SING  N  N  46  
V9M  CG2  HG23  SING  N  N  47  
V9M  CG2  HG22  SING  N  N  48  
V9M  OXT  HXT   SING  N  N  49  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
V9M  SMILES            ACDLabs               12.01  "C(C(C(C)C)[NH+](CCC(CC(C)(C)C)C)C)(O)=O"  
V9M  InChI             InChI                 1.03   "InChI=1S/C15H31NO2/c1-11(2)13(14(17)18)16(7)9-8-12(3)10-15(4,5)6/h11-13H,8-10H2,1-7H3,(H,17,18)/p+1/t12-,13-/m0/s1"  
V9M  InChIKey          InChI                 1.03   OJDKVOGMPHTYGS-STQMWFEESA-O  
V9M  SMILES_CANONICAL  CACTVS                3.385  "CC(C)[C@H]([NH+](C)CC[C@H](C)CC(C)(C)C)C(O)=O"  
V9M  SMILES            CACTVS                3.385  "CC(C)[CH]([NH+](C)CC[CH](C)CC(C)(C)C)C(O)=O"  
V9M  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@@H](CC[NH+](C)[C@@H](C(C)C)C(=O)O)CC(C)(C)C"  
V9M  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)C(C(=O)O)[NH+](C)CCC(C)CC(C)(C)C"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
V9M  "SYSTEMATIC NAME"  ACDLabs               12.01  "(3R)-N-[(1S)-1-carboxy-2-methylpropyl]-N,3,5,5-tetramethylhexan-1-aminium"  
V9M  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "methyl-[(2~{S})-3-methyl-1-oxidanyl-1-oxidanylidene-butan-2-yl]-[(3~{R})-3,5,5-trimethylhexyl]azanium"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
V9M  "Create component"  2020-07-21  RCSB  
V9M  "Initial release"   2020-09-16  RCSB  
##
