data_V9R
# 
_chem_comp.id                                    V9R 
_chem_comp.name                                  "~{tert}-butyl (~{N}~{E})-~{N}-[1-[(2~{R})-3-cyclopropyl-1-oxidanylidene-1-[[(2~{S},3~{S})-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]-4-[(phenylmethyl)amino]butan-2-yl]amino]propan-2-yl]-2-oxidanylidene-4~{H}-pyridin-3-ylidene]carbamate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C31 H41 N5 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "(R,S,S)-13b; 13b-H" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-02-28 
_chem_comp.pdbx_modified_date                    2023-03-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        595.687 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     V9R 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8A4Q 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
V9R O26 O1  O 0 1 N N N -7.566  -22.658 -3.888 5.495  3.026  -0.037 O26 V9R 1  
V9R C24 C1  C 0 1 N N N -6.956  -23.407 -3.125 5.771  1.941  0.435  C24 V9R 2  
V9R O25 O2  O 0 1 N N N -5.587  -23.183 -2.702 7.032  1.473  0.359  O25 V9R 3  
V9R C27 C2  C 0 1 N N N -4.692  -22.107 -3.019 8.010  2.320  -0.300 C27 V9R 4  
V9R C31 C3  C 0 1 N N N -3.417  -22.338 -2.197 7.576  2.569  -1.746 C31 V9R 5  
V9R C32 C4  C 0 1 N N N -5.316  -20.797 -2.575 8.110  3.656  0.440  C32 V9R 6  
V9R C33 C5  C 0 1 N N N -4.441  -22.121 -4.517 9.375  1.628  -0.289 C33 V9R 7  
V9R N23 N1  N 0 1 N N N -7.439  -24.542 -2.632 4.815  1.206  1.040  N23 V9R 8  
V9R C19 C6  C 0 1 N N N -8.603  -25.101 -2.981 4.290  0.188  0.423  C19 V9R 9  
V9R C21 C7  C 0 1 N N N -8.883  -26.370 -2.304 3.165  -0.594 1.018  C21 V9R 10 
V9R O22 O3  O 0 1 N N N -8.012  -26.790 -1.492 3.007  -0.658 2.221  O22 V9R 11 
V9R C18 C8  C 0 1 N N N -9.540  -24.631 -3.902 4.786  -0.261 -0.937 C18 V9R 12 
V9R C17 C9  C 0 1 N N N -10.714 -25.325 -4.155 3.589  -0.665 -1.761 C17 V9R 13 
V9R C16 C10 C 0 1 N N N -10.985 -26.510 -3.495 2.487  -1.107 -1.199 C16 V9R 14 
V9R N15 N2  N 0 1 N N N -10.114 -27.012 -2.599 2.328  -1.228 0.166  N15 V9R 15 
V9R C20 C11 C 0 1 N N R -10.378 -28.291 -1.915 1.243  -2.054 0.699  C20 V9R 16 
V9R C22 C12 C 0 1 N N N -10.796 -29.396 -2.895 1.322  -3.455 0.090  C22 V9R 17 
V9R C29 C13 C 0 1 N N N -9.618  -29.636 -3.851 2.613  -4.138 0.547  C29 V9R 18 
V9R C34 C14 C 0 1 N N N -9.721  -28.930 -5.206 2.936  -5.510 -0.049 C34 V9R 19 
V9R C30 C15 C 0 1 N N N -9.870  -30.454 -5.124 2.480  -5.396 1.408  C30 V9R 20 
V9R C36 C16 C 0 1 N N N -11.308 -28.114 -0.734 -0.083 -1.429 0.350  C36 V9R 21 
V9R O37 O4  O 0 1 N N N -12.224 -27.289 -0.693 -0.132 -0.513 -0.443 O37 V9R 22 
V9R N38 N3  N 0 1 N N N -10.894 -28.942 0.240  -1.215 -1.888 0.919  N38 V9R 23 
V9R C40 C17 C 0 1 N N S -11.267 -29.063 1.625  -2.514 -1.356 0.499  C40 V9R 24 
V9R C42 C18 C 0 1 N N N -11.783 -27.884 2.467  -3.010 -2.127 -0.725 C42 V9R 25 
V9R C45 C19 C 0 1 N N S -11.263 -26.448 2.309  -4.194 -1.387 -1.350 C45 V9R 26 
V9R C47 C20 C 0 1 N N N -11.036 -25.777 3.643  -3.760 -0.031 -1.863 C47 V9R 27 
V9R O48 O5  O 0 1 N N N -11.684 -26.008 4.653  -3.569 0.945  -1.169 O48 V9R 28 
V9R N49 N4  N 0 1 N N N -10.066 -24.862 3.529  -3.615 -0.067 -3.199 N49 V9R 29 
V9R C51 C21 C 0 1 N N N -9.440  -24.858 2.207  -3.913 -1.402 -3.731 C51 V9R 30 
V9R C54 C22 C 0 1 N N N -9.974  -26.131 1.533  -4.691 -2.128 -2.612 C54 V9R 31 
V9R C57 C23 C 0 1 N N S -12.093 -30.351 1.827  -3.521 -1.509 1.641  C57 V9R 32 
V9R O40 O6  O 0 1 N N N -11.110 -31.227 2.399  -3.793 -2.896 1.853  O40 V9R 33 
V9R C35 C24 C 0 1 N N N -12.790 -31.058 0.665  -4.799 -0.795 1.283  C35 V9R 34 
V9R O41 O7  O 0 1 N N N -12.472 -32.211 0.382  -5.827 -1.425 1.145  O41 V9R 35 
V9R N36 N5  N 0 1 N N N -13.779 -30.396 0.043  -4.800 0.542  1.115  N36 V9R 36 
V9R C13 C25 C 0 1 N N N -14.619 -31.006 -0.999 -6.043 1.235  0.766  C13 V9R 37 
V9R C14 C26 C 0 1 Y N N -14.380 -30.434 -2.376 -5.774 2.713  0.637  C14 V9R 38 
V9R C28 C27 C 0 1 Y N N -14.137 -31.283 -3.462 -5.406 3.244  -0.584 C28 V9R 39 
V9R C26 C28 C 0 1 Y N N -13.919 -30.707 -4.719 -5.160 4.600  -0.702 C26 V9R 40 
V9R C25 C29 C 0 1 Y N N -13.970 -29.310 -4.893 -5.281 5.423  0.402  C25 V9R 41 
V9R C23 C30 C 0 1 Y N N -14.235 -28.475 -3.810 -5.649 4.891  1.623  C23 V9R 42 
V9R C15 C31 C 0 1 Y N N -14.446 -29.044 -2.545 -5.901 3.537  1.740  C15 V9R 43 
V9R H1  H1  H 0 1 N N N -3.662  -22.317 -1.125 6.604  3.063  -1.754 H1  V9R 44 
V9R H2  H2  H 0 1 N N N -2.987  -23.317 -2.455 8.311  3.205  -2.241 H2  V9R 45 
V9R H3  H3  H 0 1 N N N -2.687  -21.546 -2.422 7.505  1.618  -2.273 H3  V9R 46 
V9R H4  H4  H 0 1 N N N -5.484  -20.820 -1.488 8.419  3.478  1.470  H4  V9R 47 
V9R H5  H5  H 0 1 N N N -4.640  -19.966 -2.824 8.844  4.291  -0.055 H5  V9R 48 
V9R H6  H6  H 0 1 N N N -6.277  -20.655 -3.092 7.138  4.149  0.432  H6  V9R 49 
V9R H7  H7  H 0 1 N N N -3.756  -21.302 -4.782 9.303  0.676  -0.816 H7  V9R 50 
V9R H8  H8  H 0 1 N N N -3.991  -23.083 -4.804 10.108 2.263  -0.784 H8  V9R 51 
V9R H9  H9  H 0 1 N N N -5.394  -21.988 -5.050 9.684  1.450  0.741  H9  V9R 52 
V9R H10 H10 H 0 1 N N N -9.015  -24.547 -4.865 5.310  0.559  -1.427 H10 V9R 53 
V9R H11 H11 H 0 1 N N N -9.839  -23.630 -3.559 5.458  -1.112 -0.822 H11 V9R 54 
V9R H12 H12 H 0 1 N N N -11.422 -24.937 -4.873 3.638  -0.589 -2.837 H12 V9R 55 
V9R H13 H13 H 0 1 N N N -11.904 -27.038 -3.700 1.662  -1.388 -1.837 H13 V9R 56 
V9R H14 H14 H 0 1 N N N -9.416  -28.618 -1.493 1.338  -2.124 1.783  H14 V9R 57 
V9R H15 H15 H 0 1 N N N -11.682 -29.078 -3.464 0.465  -4.043 0.417  H15 V9R 58 
V9R H16 H16 H 0 1 N N N -11.026 -30.320 -2.344 1.317  -3.380 -0.998 H16 V9R 59 
V9R H17 H17 H 0 1 N N N -8.617  -29.710 -3.400 3.449  -3.471 0.756  H17 V9R 60 
V9R H18 H18 H 0 1 N N N -8.824  -28.489 -5.666 2.228  -5.926 -0.766 H18 V9R 61 
V9R H19 H19 H 0 1 N N N -10.596 -28.304 -5.434 3.984  -5.745 -0.231 H19 V9R 62 
V9R H20 H20 H 0 1 N N N -10.852 -30.921 -5.293 3.230  -5.556 2.184  H20 V9R 63 
V9R H21 H21 H 0 1 N N N -9.080  -31.106 -5.524 1.474  -5.737 1.649  H21 V9R 64 
V9R H22 H22 H 0 1 N N N -10.196 -29.596 -0.052 -1.170 -2.571 1.607  H22 V9R 65 
V9R H23 H23 H 0 1 N N N -10.318 -29.311 2.122  -2.410 -0.301 0.246  H23 V9R 66 
V9R H24 H24 H 0 1 N N N -12.867 -27.835 2.286  -2.205 -2.206 -1.456 H24 V9R 67 
V9R H25 H25 H 0 1 N N N -11.599 -28.158 3.516  -3.325 -3.126 -0.422 H25 V9R 68 
V9R H26 H26 H 0 1 N N N -12.066 -25.885 1.810  -5.001 -1.280 -0.625 H26 V9R 69 
V9R H27 H27 H 0 1 N N N -9.797  -24.246 4.270  -3.349 0.692  -3.741 H27 V9R 70 
V9R H28 H28 H 0 1 N N N -8.344  -24.893 2.294  -4.528 -1.322 -4.628 H28 V9R 71 
V9R H29 H29 H 0 1 N N N -9.734  -23.963 1.639  -2.988 -1.933 -3.956 H29 V9R 72 
V9R H30 H30 H 0 1 N N N -10.192 -25.949 0.470  -4.425 -3.185 -2.574 H30 V9R 73 
V9R H31 H31 H 0 1 N N N -9.250  -26.955 1.623  -5.767 -2.003 -2.740 H31 V9R 74 
V9R H32 H32 H 0 1 N N N -12.857 -30.134 2.588  -3.107 -1.077 2.552  H32 V9R 75 
V9R H33 H33 H 0 1 N N N -11.114 -32.055 1.933  -4.165 -3.346 1.082  H33 V9R 76 
V9R H34 H34 H 0 1 N N N -13.952 -29.445 0.300  -3.978 1.045  1.225  H34 V9R 77 
V9R H35 H35 H 0 1 N N N -15.674 -30.846 -0.734 -6.420 0.851  -0.181 H35 V9R 78 
V9R H36 H36 H 0 1 N N N -14.408 -32.085 -1.029 -6.784 1.067  1.548  H36 V9R 79 
V9R H37 H37 H 0 1 N N N -14.118 -32.355 -3.333 -5.311 2.601  -1.447 H37 V9R 80 
V9R H38 H38 H 0 1 N N N -13.709 -31.342 -5.567 -4.872 5.015  -1.657 H38 V9R 81 
V9R H39 H39 H 0 1 N N N -13.803 -28.884 -5.871 -5.087 6.481  0.310  H39 V9R 82 
V9R H40 H40 H 0 1 N N N -14.277 -27.404 -3.942 -5.743 5.534  2.486  H40 V9R 83 
V9R H41 H41 H 0 1 N N N -14.660 -28.409 -1.698 -6.189 3.121  2.694  H41 V9R 84 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
V9R C34 C30 SING N N 1  
V9R C34 C29 SING N N 2  
V9R C30 C29 SING N N 3  
V9R C25 C26 DOUB Y N 4  
V9R C25 C23 SING Y N 5  
V9R C26 C28 SING Y N 6  
V9R C33 C27 SING N N 7  
V9R C17 C18 SING N N 8  
V9R C17 C16 DOUB N N 9  
V9R C18 C19 SING N N 10 
V9R O26 C24 DOUB N N 11 
V9R C29 C22 SING N N 12 
V9R C23 C15 DOUB Y N 13 
V9R C16 N15 SING N N 14 
V9R C28 C14 DOUB Y N 15 
V9R C24 O25 SING N N 16 
V9R C24 N23 SING N N 17 
V9R C27 O25 SING N N 18 
V9R C27 C32 SING N N 19 
V9R C27 C31 SING N N 20 
V9R C19 N23 DOUB N N 21 
V9R C19 C21 SING N N 22 
V9R C22 C20 SING N N 23 
V9R N15 C21 SING N N 24 
V9R N15 C20 SING N N 25 
V9R C15 C14 SING Y N 26 
V9R C14 C13 SING N N 27 
V9R C21 O22 DOUB N N 28 
V9R C20 C36 SING N N 29 
V9R C13 N36 SING N N 30 
V9R C36 O37 DOUB N N 31 
V9R C36 N38 SING N N 32 
V9R N36 C35 SING N N 33 
V9R N38 C40 SING N N 34 
V9R O41 C35 DOUB N N 35 
V9R C35 C57 SING N N 36 
V9R C54 C51 SING N N 37 
V9R C54 C45 SING N N 38 
V9R C40 C57 SING N N 39 
V9R C40 C42 SING N N 40 
V9R C57 O40 SING N N 41 
V9R C51 N49 SING N N 42 
V9R C45 C42 SING N N 43 
V9R C45 C47 SING N N 44 
V9R N49 C47 SING N N 45 
V9R C47 O48 DOUB N N 46 
V9R C31 H1  SING N N 47 
V9R C31 H2  SING N N 48 
V9R C31 H3  SING N N 49 
V9R C32 H4  SING N N 50 
V9R C32 H5  SING N N 51 
V9R C32 H6  SING N N 52 
V9R C33 H7  SING N N 53 
V9R C33 H8  SING N N 54 
V9R C33 H9  SING N N 55 
V9R C18 H10 SING N N 56 
V9R C18 H11 SING N N 57 
V9R C17 H12 SING N N 58 
V9R C16 H13 SING N N 59 
V9R C20 H14 SING N N 60 
V9R C22 H15 SING N N 61 
V9R C22 H16 SING N N 62 
V9R C29 H17 SING N N 63 
V9R C34 H18 SING N N 64 
V9R C34 H19 SING N N 65 
V9R C30 H20 SING N N 66 
V9R C30 H21 SING N N 67 
V9R N38 H22 SING N N 68 
V9R C40 H23 SING N N 69 
V9R C42 H24 SING N N 70 
V9R C42 H25 SING N N 71 
V9R C45 H26 SING N N 72 
V9R N49 H27 SING N N 73 
V9R C51 H28 SING N N 74 
V9R C51 H29 SING N N 75 
V9R C54 H30 SING N N 76 
V9R C54 H31 SING N N 77 
V9R C57 H32 SING N N 78 
V9R O40 H33 SING N N 79 
V9R N36 H34 SING N N 80 
V9R C13 H35 SING N N 81 
V9R C13 H36 SING N N 82 
V9R C28 H37 SING N N 83 
V9R C26 H38 SING N N 84 
V9R C25 H39 SING N N 85 
V9R C23 H40 SING N N 86 
V9R C15 H41 SING N N 87 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
V9R InChI            InChI                1.06  "InChI=1S/C31H41N5O7/c1-31(2,3)43-30(42)35-22-10-7-15-36(29(22)41)24(16-19-11-12-19)27(39)34-23(17-21-13-14-32-26(21)38)25(37)28(40)33-18-20-8-5-4-6-9-20/h4-9,15,19,21,23-25,37H,10-14,16-18H2,1-3H3,(H,32,38)(H,33,40)(H,34,39)/b35-22+/t21-,23-,24+,25-/m0/s1" 
V9R InChIKey         InChI                1.06  HIQXVKIISKTUPK-FTZGMBJCSA-N                                                                                                                                                                                                                                       
V9R SMILES_CANONICAL CACTVS               3.385 "CC(C)(C)OC(=O)N=C1CC=CN([C@H](CC2CC2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@H](O)C(=O)NCc4ccccc4)C1=O"                                                                                                                                                                  
V9R SMILES           CACTVS               3.385 "CC(C)(C)OC(=O)N=C1CC=CN([CH](CC2CC2)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)C(=O)NCc4ccccc4)C1=O"                                                                                                                                                                        
V9R SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(C)OC(=O)/N=C/1\CC=CN(C1=O)[C@H](CC2CC2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@@H](C(=O)NCc4ccccc4)O"                                                                                                                                                              
V9R SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)(C)OC(=O)N=C1CC=CN(C1=O)C(CC2CC2)C(=O)NC(CC3CCNC3=O)C(C(=O)NCc4ccccc4)O"                                                                                                                                                                                    
# 
_pdbx_chem_comp_identifier.comp_id           V9R 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "~{tert}-butyl (~{N}~{E})-~{N}-[1-[(2~{R})-3-cyclopropyl-1-oxidanylidene-1-[[(2~{S},3~{S})-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]-4-[(phenylmethyl)amino]butan-2-yl]amino]propan-2-yl]-2-oxidanylidene-4~{H}-pyridin-3-ylidene]carbamate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
V9R "Create component" 2023-02-28 PDBE 
V9R "Initial release"  2023-03-08 RCSB 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 V9R "(R,S,S)-13b" AUTHOR ? 
2 V9R 13b-H         AUTHOR ? 
# 
