data_VAY
#

_chem_comp.id                                   VAY
_chem_comp.name                                 "{(1R,2R,3S,4R)-4-[(5-{4-[(1S)-1-(6-bromopyridin-2-yl)-1-hydroxyethyl]thiophene-2-carbonyl}pyrimidin-4-yl)amino]-2,3-dihydroxycyclopentyl}methyl sulfamate"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C22 H24 Br N5 O7 S2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-07-22
_chem_comp.pdbx_modified_date                   2021-03-05
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       614.489
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    VAY
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6XOG
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VAY  C4    C1   C   0  1  N  N  N  34.418   -3.082  26.201  -3.735  -0.343  -0.275  C4    VAY   1  
VAY  C5    C2   C   0  1  N  N  R  33.551   -3.397  24.917  -5.266  -0.466  -0.077  C5    VAY   2  
VAY  C6    C3   C   0  1  N  N  N  32.085   -3.222  25.330  -5.845   0.847   0.454  C6    VAY   3  
VAY  C8    C4   C   0  1  Y  N  N  37.703   -3.592  27.517  -1.080  -2.967  -0.174  C8    VAY   4  
VAY  C10   C5   C   0  1  Y  N  N  39.560   -2.354  26.793  -0.908  -5.060  -1.116  C10   VAY   5  
VAY  C13   C6   C   0  1  Y  N  N  38.369   -3.704  28.763   0.303  -2.995   0.099  C13   VAY   6  
VAY  C15   C7   C   0  1  Y  N  N  38.470   -5.155  30.980   1.251  -0.633   0.019  C15   VAY   7  
VAY  C20   C8   C   0  1  Y  N  N  39.678   -5.772  31.046   1.934   0.451   0.500  C20   VAY   8  
VAY  C21   C9   C   0  1  N  N  S  41.305   -7.167  32.693   2.775   2.754  -0.107  C21   VAY   9  
VAY  C22   C10  C   0  1  Y  N  N  40.659   -8.477  32.309   4.245   2.480   0.084  C22   VAY  10  
VAY  C24   C11  C   0  1  Y  N  N  40.537  -10.197  30.758   5.960   0.948   0.231  C24   VAY  11  
VAY  C26   C12  C   0  1  Y  N  N  39.184  -10.351  32.759   6.467   3.272   0.453  C26   VAY  12  
VAY  C27   C13  C   0  1  Y  N  N  39.734   -9.133  33.149   5.116   3.534   0.278  C27   VAY  13  
VAY  C25   C14  C   0  1  Y  N  N  39.598  -10.888  31.539   6.892   1.953   0.426  C25   VAY  14  
VAY  BR28  BR1  BR  0  0  N  N  N  41.119  -10.887  29.097   6.524  -0.856   0.198  BR28  VAY  15  
VAY  N23   N1   N   0  1  Y  N  N  41.056   -9.024  31.158   4.683   1.236   0.068  N23   VAY  16  
VAY  O30   O1   O   0  1  N  N  N  41.985   -6.390  31.779   2.598   3.671  -1.189  O30   VAY  17  
VAY  C29   C15  C   0  1  N  N  N  41.339   -6.810  34.170   2.199   3.360   1.175  C29   VAY  18  
VAY  C19   C16  C   0  1  Y  N  N  39.942   -6.359  32.288   2.060   1.465  -0.419  C19   VAY  19  
VAY  C18   C17  C   0  1  Y  N  N  38.910   -6.217  33.170   1.501   1.224  -1.611  C18   VAY  20  
VAY  S17   S1   S   0  1  Y  N  N  37.618   -5.342  32.415   0.773  -0.319  -1.644  S17   VAY  21  
VAY  C14   C18  C   0  1  N  N  N  37.710   -4.408  29.865   0.969  -1.860   0.767  C14   VAY  22  
VAY  O16   O2   O   0  1  N  N  N  36.491   -4.310  29.950   1.283  -1.944   1.941  O16   VAY  23  
VAY  C12   C19  C   0  1  Y  N  N  39.621   -3.139  28.999   1.025  -4.130  -0.282  C12   VAY  24  
VAY  N11   N2   N   0  1  Y  N  N  40.185   -2.468  27.988   0.389  -5.124  -0.877  N11   VAY  25  
VAY  N9    N3   N   0  1  Y  N  N  38.359   -2.902  26.561  -1.634  -4.015  -0.777  N9    VAY  26  
VAY  N7    N4   N   0  1  N  N  N  36.485   -4.141  27.324  -1.845  -1.877   0.184  N7    VAY  27  
VAY  C3    C20  C   0  1  N  N  R  35.672   -4.009  26.046  -3.257  -1.815  -0.203  C3    VAY  28  
VAY  C2    C21  C   0  1  N  N  S  34.960   -5.343  25.679  -4.144  -2.447   0.890  C2    VAY  29  
VAY  O32   O3   O   0  1  N  N  N  35.884   -6.183  24.993  -4.474  -3.792   0.534  O32   VAY  30  
VAY  C1    C22  C   0  1  N  N  R  33.838   -4.921  24.662  -5.424  -1.589   0.970  C1    VAY  31  
VAY  O31   O4   O   0  1  N  N  N  34.243   -4.967  23.297  -6.570  -2.385   0.665  O31   VAY  32  
VAY  O33   O5   O   0  1  N  N  N  31.187   -3.527  24.313  -5.714   1.863  -0.542  O33   VAY  33  
VAY  S34   S2   S   0  1  N  N  N  29.829   -4.062  24.654  -6.260   3.219  -0.118  S34   VAY  34  
VAY  O35   O6   O   0  1  N  N  N  29.075   -4.140  23.391  -6.235   4.041  -1.277  O35   VAY  35  
VAY  O36   O7   O   0  1  N  N  N  30.038   -5.362  25.314  -7.443   2.961   0.626  O36   VAY  36  
VAY  N37   N5   N   0  1  N  N  N  29.066   -2.983  25.700  -5.173   3.875   0.945  N37   VAY  37  
VAY  H1    H1   H   0  1  N  N  N  34.715   -2.023  26.223  -3.505   0.091  -1.248  H1    VAY  38  
VAY  H2    H2   H   0  1  N  N  N  33.862   -3.326  27.118  -3.289   0.248   0.525  H2    VAY  39  
VAY  H3    H3   H   0  1  N  N  N  33.833   -2.768  24.060  -5.751  -0.744  -1.013  H3    VAY  40  
VAY  H4    H4   H   0  1  N  N  N  31.930   -2.175  25.631  -6.899   0.708   0.696  H4    VAY  41  
VAY  H5    H5   H   0  1  N  N  N  31.882   -3.883  26.185  -5.304   1.145   1.352  H5    VAY  42  
VAY  H6    H6   H   0  1  N  N  N  40.045   -1.803  26.000  -1.390  -5.894  -1.605  H6    VAY  43  
VAY  H7    H7   H   0  1  N  N  N  40.370   -5.806  30.217   2.334   0.504   1.502  H7    VAY  44  
VAY  H8    H8   H   0  1  N  N  N  38.462  -10.862  33.379   7.171   4.076   0.608  H8    VAY  45  
VAY  H9    H9   H   0  1  N  N  N  39.453   -8.691  34.093   4.750   4.550   0.294  H9    VAY  46  
VAY  H10   H10  H   0  1  N  N  N  39.197  -11.831  31.198   7.936   1.712   0.559  H10   VAY  47  
VAY  H11   H11  H   0  1  N  N  N  42.902   -6.638  31.772   2.941   3.352  -2.035  H11   VAY  48  
VAY  H12   H12  H   0  1  N  N  N  40.743   -7.540  34.738   2.717   4.292   1.400  H12   VAY  49  
VAY  H13   H13  H   0  1  N  N  N  42.379   -6.828  34.528   1.136   3.558   1.037  H13   VAY  50  
VAY  H14   H14  H   0  1  N  N  N  40.920   -5.803  34.313   2.334   2.661   2.000  H14   VAY  51  
VAY  H15   H15  H   0  1  N  N  N  38.900   -6.592  34.183   1.510   1.914  -2.442  H15   VAY  52  
VAY  H16   H16  H   0  1  N  N  N  40.114   -3.238  29.955   2.086  -4.194  -0.093  H16   VAY  53  
VAY  H17   H17  H   0  1  N  N  N  35.906   -3.771  28.050  -1.449  -1.151   0.691  H17   VAY  54  
VAY  H18   H18  H   0  1  N  N  N  36.301   -3.666  25.212  -3.413  -2.313  -1.159  H18   VAY  55  
VAY  H19   H19  H   0  1  N  N  N  34.523   -5.817  26.570  -3.625  -2.431   1.848  H19   VAY  56  
VAY  H20   H20  H   0  1  N  N  N  36.573   -6.451  25.590  -5.031  -4.244   1.182  H20   VAY  57  
VAY  H21   H21  H   0  1  N  N  N  32.927   -5.510  24.843  -5.522  -1.158   1.966  H21   VAY  58  
VAY  H22   H22  H   0  1  N  N  N  34.439   -5.864  23.054  -6.723  -3.109   1.287  H22   VAY  59  
VAY  H23   H23  H   0  1  N  N  N  29.578   -2.930  26.557  -4.368   3.387   1.178  H23   VAY  60  
VAY  H24   H24  H   0  1  N  N  N  29.030   -2.078  25.277  -5.341   4.747   1.334  H24   VAY  61  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VAY  O31   C1   SING  N  N   1  
VAY  O35   S34  DOUB  N  N   2  
VAY  O33   S34  SING  N  N   3  
VAY  O33   C6   SING  N  N   4  
VAY  S34   O36  DOUB  N  N   5  
VAY  S34   N37  SING  N  N   6  
VAY  C1    C5   SING  N  N   7  
VAY  C1    C2   SING  N  N   8  
VAY  C5    C6   SING  N  N   9  
VAY  C5    C4   SING  N  N  10  
VAY  O32   C2   SING  N  N  11  
VAY  C2    C3   SING  N  N  12  
VAY  C3    C4   SING  N  N  13  
VAY  C3    N7   SING  N  N  14  
VAY  N9    C10  DOUB  Y  N  15  
VAY  N9    C8   SING  Y  N  16  
VAY  C10   N11  SING  Y  N  17  
VAY  N7    C8   SING  N  N  18  
VAY  C8    C13  DOUB  Y  N  19  
VAY  N11   C12  DOUB  Y  N  20  
VAY  C13   C12  SING  Y  N  21  
VAY  C13   C14  SING  N  N  22  
VAY  BR28  C24  SING  N  N  23  
VAY  C14   O16  DOUB  N  N  24  
VAY  C14   C15  SING  N  N  25  
VAY  C24   N23  DOUB  Y  N  26  
VAY  C24   C25  SING  Y  N  27  
VAY  C15   C20  DOUB  Y  N  28  
VAY  C15   S17  SING  Y  N  29  
VAY  C20   C19  SING  Y  N  30  
VAY  N23   C22  SING  Y  N  31  
VAY  C25   C26  DOUB  Y  N  32  
VAY  O30   C21  SING  N  N  33  
VAY  C19   C21  SING  N  N  34  
VAY  C19   C18  DOUB  Y  N  35  
VAY  C22   C21  SING  N  N  36  
VAY  C22   C27  DOUB  Y  N  37  
VAY  S17   C18  SING  Y  N  38  
VAY  C21   C29  SING  N  N  39  
VAY  C26   C27  SING  Y  N  40  
VAY  C4    H1   SING  N  N  41  
VAY  C4    H2   SING  N  N  42  
VAY  C5    H3   SING  N  N  43  
VAY  C6    H4   SING  N  N  44  
VAY  C6    H5   SING  N  N  45  
VAY  C10   H6   SING  N  N  46  
VAY  C20   H7   SING  N  N  47  
VAY  C26   H8   SING  N  N  48  
VAY  C27   H9   SING  N  N  49  
VAY  C25   H10  SING  N  N  50  
VAY  O30   H11  SING  N  N  51  
VAY  C29   H12  SING  N  N  52  
VAY  C29   H13  SING  N  N  53  
VAY  C29   H14  SING  N  N  54  
VAY  C18   H15  SING  N  N  55  
VAY  C12   H16  SING  N  N  56  
VAY  N7    H17  SING  N  N  57  
VAY  C3    H18  SING  N  N  58  
VAY  C2    H19  SING  N  N  59  
VAY  O32   H20  SING  N  N  60  
VAY  C1    H21  SING  N  N  61  
VAY  O31   H22  SING  N  N  62  
VAY  N37   H23  SING  N  N  63  
VAY  N37   H24  SING  N  N  64  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VAY  SMILES            ACDLabs               12.01  "C1C(COS(=O)(N)=O)C(C(C1Nc2c(cncn2)C(c4cc(C(C)(c3cccc(n3)Br)O)cs4)=O)O)O"  
VAY  InChI             InChI                 1.03   "InChI=1S/C22H24BrN5O7S2/c1-22(32,16-3-2-4-17(23)28-16)12-6-15(36-9-12)19(30)13-7-25-10-26-21(13)27-14-5-11(18(29)20(14)31)8-35-37(24,33)34/h2-4,6-7,9-11,14,18,20,29,31-32H,5,8H2,1H3,(H2,24,33,34)(H,25,26,27)/t11-,14-,18-,20+,22+/m1/s1"  
VAY  InChIKey          InChI                 1.03   IZYVMHSGDZFGFW-SULQKKJVSA-N  
VAY  SMILES_CANONICAL  CACTVS                3.385  "C[C@](O)(c1csc(c1)C(=O)c2cncnc2N[C@@H]3C[C@H](CO[S](N)(=O)=O)[C@@H](O)[C@H]3O)c4cccc(Br)n4"  
VAY  SMILES            CACTVS                3.385  "C[C](O)(c1csc(c1)C(=O)c2cncnc2N[CH]3C[CH](CO[S](N)(=O)=O)[CH](O)[CH]3O)c4cccc(Br)n4"  
VAY  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@@](c1cccc(n1)Br)(c2cc(sc2)C(=O)c3cncnc3N[C@@H]4C[C@@H]([C@H]([C@H]4O)O)COS(=O)(=O)N)O"  
VAY  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(c1cccc(n1)Br)(c2cc(sc2)C(=O)c3cncnc3NC4CC(C(C4O)O)COS(=O)(=O)N)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VAY  "SYSTEMATIC NAME"  ACDLabs               12.01  "{(1R,2R,3S,4R)-4-[(5-{4-[(1S)-1-(6-bromopyridin-2-yl)-1-hydroxyethyl]thiophene-2-carbonyl}pyrimidin-4-yl)amino]-2,3-dihydroxycyclopentyl}methyl sulfamate"  
VAY  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "[(1~{R},2~{R},3~{S},4~{R})-4-[[5-[4-[(1~{S})-1-(6-bromanylpyridin-2-yl)-1-oxidanyl-ethyl]thiophen-2-yl]carbonylpyrimidin-4-yl]amino]-2,3-bis(oxidanyl)cyclopentyl]methyl sulfamate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VAY  "Create component"  2020-07-22  RCSB  
VAY  "Initial release"   2021-03-10  RCSB  
##
