data_VB7
#

_chem_comp.id                                   VB7
_chem_comp.name                                 "{(1R,2S,4R)-4-[(5-{4-[(1R)-3,4-dihydro-1H-2-benzopyran-1-yl]thiophene-2-carbonyl}pyrimidin-4-yl)amino]-2-hydroxycyclopentyl}methyl sulfamate"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C24 H26 N4 O6 S2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-07-22
_chem_comp.pdbx_modified_date                   2021-03-19
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       530.616
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    VB7
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6XOH
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VB7  C5   C1   C  0  1  Y  N  N  39.870   -2.159  26.847   0.403   5.415  -0.980  C5   VB7   1  
VB7  C7   C2   C  0  1  Y  N  N  39.794   -2.962  29.028  -1.370   4.671   0.285  C7   VB7   2  
VB7  C8   C3   C  0  1  Y  N  N  38.571   -3.542  28.714  -0.750   3.424   0.403  C8   VB7   3  
VB7  C13  C4   C  0  1  Y  N  N  40.200   -6.102  32.121  -3.198  -0.720   0.121  C13  VB7   4  
VB7  C17  C5   C  0  1  Y  N  N  41.523   -8.222  31.802  -5.450  -1.678   0.358  C17  VB7   5  
VB7  C20  C6   C  0  1  N  N  N  44.079   -6.867  31.938  -4.385  -4.215  -0.048  C20  VB7   6  
VB7  C22  C7   C  0  1  Y  N  N  40.325   -8.942  31.926  -5.964  -0.457   0.766  C22  VB7   7  
VB7  C24  C8   C  0  1  Y  N  N  41.329  -10.820  30.792  -8.149  -1.133   0.067  C24  VB7   8  
VB7  C26  C9   C  0  1  N  N  N  34.826   -3.017  26.036   2.793   0.427  -1.043  C26  VB7   9  
VB7  C28  C10  C  0  1  N  N  S  34.118   -4.931  24.674   4.437   1.060   0.616  C28  VB7  10  
VB7  C23  C11  C  0  1  Y  N  N  40.228  -10.239  31.428  -7.310  -0.184   0.621  C23  VB7  11  
VB7  C25  C12  C  0  1  Y  N  N  42.530  -10.107  30.679  -7.639  -2.351  -0.336  C25  VB7  12  
VB7  C18  C13  C  0  1  Y  N  N  42.657   -8.801  31.180  -6.287  -2.623  -0.196  C18  VB7  13  
VB7  C19  C14  C  0  1  N  N  N  44.035   -8.103  31.006  -5.764  -3.959  -0.659  C19  VB7  14  
VB7  O21  O1   O  0  1  N  N  N  42.774   -6.125  31.878  -3.572  -3.054  -0.255  O21  VB7  15  
VB7  C16  C15  C  0  1  N  N  R  41.579   -6.791  32.378  -3.977  -1.940   0.539  C16  VB7  16  
VB7  C12  C16  C  0  1  Y  N  N  39.818   -5.549  30.935  -2.700   0.183   1.029  C12  VB7  17  
VB7  C14  C17  C  0  1  Y  N  N  39.261   -6.043  33.086  -2.936  -0.439  -1.162  C14  VB7  18  
VB7  S15  S1   S  0  1  Y  N  N  37.886   -5.248  32.436  -2.038   1.005  -1.300  S15  VB7  19  
VB7  C11  C18  C  0  1  Y  N  N  38.569   -5.014  30.924  -2.023   1.220   0.445  C11  VB7  20  
VB7  C9   C19  C  0  1  N  N  N  37.823   -4.319  29.741  -1.386   2.329   1.159  C9   VB7  21  
VB7  O10  O2   O  0  1  N  N  N  36.609   -4.435  29.571  -1.382   2.346   2.377  O10  VB7  22  
VB7  N6   N1   N  0  1  Y  N  N  40.427   -2.281  28.067  -0.769   5.622  -0.410  N6   VB7  23  
VB7  N4   N2   N  0  1  Y  N  N  38.694   -2.721  26.539   1.032   4.261  -0.895  N4   VB7  24  
VB7  C3   C20  C  0  1  Y  N  N  38.000   -3.432  27.428   0.502   3.245  -0.221  C3   VB7  25  
VB7  N2   N3   N  0  1  N  N  N  36.806   -3.995  27.175   1.165   2.038  -0.134  N2   VB7  26  
VB7  C1   C21  C  0  1  N  N  R  36.024   -3.961  25.895   2.514   1.902  -0.688  C1   VB7  27  
VB7  C29  C22  C  0  1  N  N  N  35.319   -5.341  25.577   3.560   2.304   0.367  C29  VB7  28  
VB7  O32  O3   O  0  1  N  N  N  34.388   -4.930  23.229   5.801   1.441   0.808  O32  VB7  29  
VB7  C27  C23  C  0  1  N  N  R  33.815   -3.443  24.984   4.285   0.221  -0.681  C27  VB7  30  
VB7  C30  C24  C  0  1  N  N  N  32.374   -3.249  25.450   4.580  -1.256  -0.409  C30  VB7  31  
VB7  O31  O4   O  0  1  N  N  N  31.439   -3.500  24.407   5.960  -1.411  -0.071  O31  VB7  32  
VB7  S33  S2   S  0  1  N  N  N  30.071   -4.071  24.644   6.368  -2.848   0.221  S33  VB7  33  
VB7  O35  O5   O  0  1  N  N  N  29.309   -4.144  23.366   7.694  -2.793   0.728  O35  VB7  34  
VB7  O36  O6   O  0  1  N  N  N  30.286   -5.406  25.244   5.287  -3.435   0.933  O36  VB7  35  
VB7  N34  N4   N  0  1  N  N  N  29.251   -2.972  25.532   6.454  -3.638  -1.231  N34  VB7  36  
VB7  H1   H1   H  0  1  N  N  N  40.389   -1.589  26.091   0.861   6.218  -1.539  H1   VB7  37  
VB7  H2   H2   H  0  1  N  N  N  40.219   -3.058  30.016  -2.329   4.853   0.746  H2   VB7  38  
VB7  H3   H3   H  0  1  N  N  N  44.262   -7.197  32.971  -4.487  -4.401   1.021  H3   VB7  39  
VB7  H4   H4   H  0  1  N  N  N  44.892   -6.199  31.617  -3.927  -5.080  -0.528  H4   VB7  40  
VB7  H5   H5   H  0  1  N  N  N  39.473   -8.488  32.410  -5.309   0.284   1.200  H5   VB7  41  
VB7  H6   H6   H  0  1  N  N  N  41.254  -11.819  30.388  -9.202  -0.924  -0.046  H6   VB7  42  
VB7  H7   H7   H  0  1  N  N  N  35.139   -1.977  25.863   2.161  -0.235  -0.450  H7   VB7  43  
VB7  H8   H8   H  0  1  N  N  N  34.389   -3.106  27.041   2.631   0.254  -2.107  H8   VB7  44  
VB7  H9   H9   H  0  1  N  N  N  33.241   -5.551  24.913   4.071   0.501   1.477  H9   VB7  45  
VB7  H10  H10  H  0  1  N  N  N  39.307  -10.793  31.533  -7.706   0.768   0.940  H10  VB7  46  
VB7  H11  H11  H  0  1  N  N  N  43.377  -10.572  30.196  -8.295  -3.093  -0.768  H11  VB7  47  
VB7  H12  H12  H  0  1  N  N  N  44.841   -8.801  31.276  -5.685  -3.961  -1.746  H12  VB7  48  
VB7  H13  H13  H  0  1  N  N  N  44.161   -7.784  29.961  -6.451  -4.746  -0.345  H13  VB7  49  
VB7  H14  H14  H  0  1  N  N  N  41.681   -6.891  33.469  -3.775  -2.155   1.588  H14  VB7  50  
VB7  H15  H15  H  0  1  N  N  N  40.461   -5.537  30.067  -2.830   0.086   2.096  H15  VB7  51  
VB7  H16  H16  H  0  1  N  N  N  39.357   -6.428  34.091  -3.250  -1.047  -1.998  H16  VB7  52  
VB7  H17  H17  H  0  1  N  N  N  36.191   -3.603  27.859   0.737   1.280   0.294  H17  VB7  53  
VB7  H18  H18  H  0  1  N  N  N  36.660   -3.659  25.049   2.618   2.526  -1.575  H18  VB7  54  
VB7  H19  H19  H  0  1  N  N  N  34.970   -5.827  26.500   3.063   2.601   1.291  H19  VB7  55  
VB7  H20  H20  H  0  1  N  N  N  36.001   -6.018  25.042   4.172   3.124  -0.008  H20  VB7  56  
VB7  H21  H21  H  0  1  N  N  N  34.587   -5.814  22.943   5.954   1.967   1.604  H21  VB7  57  
VB7  H22  H22  H  0  1  N  N  N  33.978   -2.853  24.070   4.933   0.604  -1.468  H22  VB7  58  
VB7  H23  H23  H  0  1  N  N  N  32.249   -2.213  25.797   3.961  -1.604   0.418  H23  VB7  59  
VB7  H24  H24  H  0  1  N  N  N  32.173   -3.941  26.281   4.357  -1.841  -1.301  H24  VB7  60  
VB7  H25  H25  H  0  1  N  N  N  29.699   -2.858  26.419   7.077  -4.373  -1.347  H25  VB7  61  
VB7  H26  H26  H  0  1  N  N  N  29.239   -2.096  25.050   5.883  -3.366  -1.966  H26  VB7  62  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VB7  O32  C28  SING  N  N   1  
VB7  O35  S33  DOUB  N  N   2  
VB7  O31  S33  SING  N  N   3  
VB7  O31  C30  SING  N  N   4  
VB7  S33  O36  DOUB  N  N   5  
VB7  S33  N34  SING  N  N   6  
VB7  C28  C27  SING  N  N   7  
VB7  C28  C29  SING  N  N   8  
VB7  C27  C30  SING  N  N   9  
VB7  C27  C26  SING  N  N  10  
VB7  C29  C1   SING  N  N  11  
VB7  C1   C26  SING  N  N  12  
VB7  C1   N2   SING  N  N  13  
VB7  N4   C5   DOUB  Y  N  14  
VB7  N4   C3   SING  Y  N  15  
VB7  C5   N6   SING  Y  N  16  
VB7  N2   C3   SING  N  N  17  
VB7  C3   C8   DOUB  Y  N  18  
VB7  N6   C7   DOUB  Y  N  19  
VB7  C8   C7   SING  Y  N  20  
VB7  C8   C9   SING  N  N  21  
VB7  O10  C9   DOUB  N  N  22  
VB7  C9   C11  SING  N  N  23  
VB7  C25  C24  DOUB  Y  N  24  
VB7  C25  C18  SING  Y  N  25  
VB7  C24  C23  SING  Y  N  26  
VB7  C11  C12  DOUB  Y  N  27  
VB7  C11  S15  SING  Y  N  28  
VB7  C12  C13  SING  Y  N  29  
VB7  C19  C18  SING  N  N  30  
VB7  C19  C20  SING  N  N  31  
VB7  C18  C17  DOUB  Y  N  32  
VB7  C23  C22  DOUB  Y  N  33  
VB7  C17  C22  SING  Y  N  34  
VB7  C17  C16  SING  N  N  35  
VB7  O21  C20  SING  N  N  36  
VB7  O21  C16  SING  N  N  37  
VB7  C13  C16  SING  N  N  38  
VB7  C13  C14  DOUB  Y  N  39  
VB7  S15  C14  SING  Y  N  40  
VB7  C5   H1   SING  N  N  41  
VB7  C7   H2   SING  N  N  42  
VB7  C20  H3   SING  N  N  43  
VB7  C20  H4   SING  N  N  44  
VB7  C22  H5   SING  N  N  45  
VB7  C24  H6   SING  N  N  46  
VB7  C26  H7   SING  N  N  47  
VB7  C26  H8   SING  N  N  48  
VB7  C28  H9   SING  N  N  49  
VB7  C23  H10  SING  N  N  50  
VB7  C25  H11  SING  N  N  51  
VB7  C19  H12  SING  N  N  52  
VB7  C19  H13  SING  N  N  53  
VB7  C16  H14  SING  N  N  54  
VB7  C12  H15  SING  N  N  55  
VB7  C14  H16  SING  N  N  56  
VB7  N2   H17  SING  N  N  57  
VB7  C1   H18  SING  N  N  58  
VB7  C29  H19  SING  N  N  59  
VB7  C29  H20  SING  N  N  60  
VB7  O32  H21  SING  N  N  61  
VB7  C27  H22  SING  N  N  62  
VB7  C30  H23  SING  N  N  63  
VB7  C30  H24  SING  N  N  64  
VB7  N34  H25  SING  N  N  65  
VB7  N34  H26  SING  N  N  66  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VB7  SMILES            ACDLabs               12.01  "c4ncc(C(c3cc(C2c1ccccc1CCO2)cs3)=O)c(n4)NC5CC(C(C5)O)COS(=O)(N)=O"  
VB7  InChI             InChI                 1.03   "InChI=1S/C24H26N4O6S2/c25-36(31,32)34-11-15-7-17(9-20(15)29)28-24-19(10-26-13-27-24)22(30)21-8-16(12-35-21)23-18-4-2-1-3-14(18)5-6-33-23/h1-4,8,10,12-13,15,17,20,23,29H,5-7,9,11H2,(H2,25,31,32)(H,26,27,28)/t15-,17-,20+,23+/m1/s1"  
VB7  InChIKey          InChI                 1.03   HKKCQZRJLCIYQD-NPDZVAPOSA-N  
VB7  SMILES_CANONICAL  CACTVS                3.385  "N[S](=O)(=O)OC[C@H]1C[C@H](C[C@@H]1O)Nc2ncncc2C(=O)c3scc(c3)[C@@H]4OCCc5ccccc45"  
VB7  SMILES            CACTVS                3.385  "N[S](=O)(=O)OC[CH]1C[CH](C[CH]1O)Nc2ncncc2C(=O)c3scc(c3)[CH]4OCCc5ccccc45"  
VB7  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1ccc2c(c1)CCO[C@H]2c3cc(sc3)C(=O)c4cncnc4N[C@@H]5C[C@@H]([C@H](C5)O)COS(=O)(=O)N"  
VB7  SMILES            "OpenEye OEToolkits"  2.0.7  "c1ccc2c(c1)CCOC2c3cc(sc3)C(=O)c4cncnc4NC5CC(C(C5)O)COS(=O)(=O)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VB7  "SYSTEMATIC NAME"  ACDLabs               12.01  "{(1R,2S,4R)-4-[(5-{4-[(1R)-3,4-dihydro-1H-2-benzopyran-1-yl]thiophene-2-carbonyl}pyrimidin-4-yl)amino]-2-hydroxycyclopentyl}methyl sulfamate"  
VB7  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "[(1~{R},2~{S},4~{R})-4-[[5-[4-[(1~{R})-3,4-dihydro-1~{H}-isochromen-1-yl]thiophen-2-yl]carbonylpyrimidin-4-yl]amino]-2-oxidanyl-cyclopentyl]methyl sulfamate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VB7  "Create component"  2020-07-22  RCSB  
VB7  "Initial release"   2021-03-24  RCSB  
##
