data_VBA
#

_chem_comp.id                                   VBA
_chem_comp.name                                 "[(1R,2R,3S,4R)-4-{[5-(1-benzyl-1H-pyrazole-3-carbonyl)pyrimidin-4-yl]amino}-2,3-dihydroxycyclopentyl]methyl sulfamate"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C21 H24 N6 O6 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-07-22
_chem_comp.pdbx_modified_date                   2021-03-19
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       488.517
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    VBA
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6XOI
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VBA  C4   C1   C  0  1  N  N  N  34.756   -2.918  26.104  -3.207  -0.225  -0.439  C4   VBA   1  
VBA  C5   C2   C  0  1  N  N  R  33.791   -3.239  24.932  -4.437  -1.076  -0.034  C5   VBA   2  
VBA  C8   C3   C  0  1  N  N  N  32.376   -3.057  25.437  -5.554  -0.179   0.503  C8   VBA   3  
VBA  C10  C4   C  0  1  Y  N  N  37.875   -3.409  27.463   0.411  -1.137  -0.560  C10  VBA   4  
VBA  C15  C5   C  0  1  Y  N  N  38.465   -3.505  28.725   1.633  -0.436  -0.477  C15  VBA   5  
VBA  C17  C6   C  0  1  Y  N  N  38.505   -4.722  30.982   2.949   1.704  -0.010  C17  VBA   6  
VBA  C21  C7   C  0  1  Y  N  N  40.029   -5.472  32.445   4.457   3.297   0.208  C21  VBA   7  
VBA  C22  C8   C  0  1  Y  N  N  39.880   -5.054  31.142   3.151   3.030   0.440  C22  VBA   8  
VBA  C24  C9   C  0  1  Y  N  N  37.565   -6.931  34.393   7.003   0.843  -0.090  C24  VBA   9  
VBA  C26  C10  C  0  1  Y  N  N  37.258   -9.346  34.353   8.160  -0.141   1.762  C26  VBA  10  
VBA  C28  C11  C  0  1  Y  N  N  35.336   -7.892  34.695   7.493  -1.501  -0.093  C28  VBA  11  
VBA  C25  C12  C  0  1  Y  N  N  38.096   -8.226  34.264   7.611   0.968   1.146  C25  VBA  12  
VBA  C27  C13  C  0  1  Y  N  N  35.880   -9.178  34.566   8.100  -1.375   1.143  C27  VBA  13  
VBA  C29  C14  C  0  1  Y  N  N  36.186   -6.778  34.618   6.944  -0.391  -0.709  C29  VBA  14  
VBA  C23  C15  C  0  1  N  N  N  38.434   -5.714  34.327   6.400   2.051  -0.758  C23  VBA  15  
VBA  N20  N1   N  0  1  Y  N  N  38.776   -5.378  32.970   4.999   2.187  -0.350  N20  VBA  16  
VBA  N19  N2   N  0  1  Y  N  N  37.824   -4.935  32.121   4.107   1.270  -0.468  N19  VBA  17  
VBA  C16  C16  C  0  1  N  N  N  37.788   -4.224  29.806   1.682   0.946   0.033  C16  VBA  18  
VBA  O18  O1   O  0  1  N  N  N  36.580   -4.367  29.676   0.680   1.461   0.489  O18  VBA  19  
VBA  C14  C17  C  0  1  Y  N  N  39.673   -2.870  28.936   2.796  -1.092  -0.893  C14  VBA  20  
VBA  N13  N3   N  0  1  Y  N  N  40.305   -2.174  27.966   2.706  -2.332  -1.344  N13  VBA  21  
VBA  C12  C18  C  0  1  Y  N  N  39.676   -2.134  26.786   1.544  -2.954  -1.406  C12  VBA  22  
VBA  N11  N4   N  0  1  Y  N  N  38.505   -2.724  26.508   0.420  -2.382  -1.027  N11  VBA  23  
VBA  N9   N5   N  0  1  N  N  N  36.637   -4.020  27.220  -0.767  -0.545  -0.159  N9   VBA  24  
VBA  C3   C19  C  0  1  N  N  R  35.983   -3.850  25.895  -2.041  -1.241  -0.358  C3   VBA  25  
VBA  C2   C20  C  0  1  N  N  S  35.185   -5.135  25.620  -2.380  -2.108   0.872  C2   VBA  26  
VBA  O7   O2   O  0  1  N  N  N  36.108   -6.079  25.074  -2.008  -3.467   0.631  O7   VBA  27  
VBA  C1   C21  C  0  1  N  N  R  34.085   -4.731  24.607  -3.906  -2.003   1.078  C1   VBA  28  
VBA  O6   O3   O  0  1  N  N  N  34.582   -4.824  23.255  -4.507  -3.294   0.968  O6   VBA  29  
VBA  O30  O4   O  0  1  N  N  N  31.501   -3.327  24.379  -6.049   0.649  -0.550  O30  VBA  30  
VBA  S31  S1   S  0  1  N  N  N  30.031   -3.992  24.679  -7.170   1.587  -0.126  S31  VBA  31  
VBA  O33  O5   O  0  1  N  N  N  29.395   -3.899  23.376  -7.671   2.178  -1.317  O33  VBA  32  
VBA  O34  O6   O  0  1  N  N  N  30.351   -5.270  25.275  -7.984   0.855   0.780  O34  VBA  33  
VBA  N32  N6   N  0  1  N  N  N  29.417   -2.778  25.669  -6.481   2.811   0.749  N32  VBA  34  
VBA  H1   H1   H  0  1  N  N  N  35.064   -1.863  26.071  -3.318   0.156  -1.454  H1   VBA  35  
VBA  H2   H2   H  0  1  N  N  N  34.273   -3.129  27.069  -3.056   0.594   0.265  H2   VBA  36  
VBA  H3   H3   H  0  1  N  N  N  33.997   -2.597  24.063  -4.792  -1.660  -0.883  H3   VBA  37  
VBA  H4   H4   H  0  1  N  N  N  32.234   -2.023  25.784  -6.364  -0.800   0.889  H4   VBA  38  
VBA  H5   H5   H  0  1  N  N  N  32.184   -3.753  26.267  -5.164   0.447   1.305  H5   VBA  39  
VBA  H6   H6   H  0  1  N  N  N  40.932   -5.799  32.938   4.971   4.221   0.426  H6   VBA  40  
VBA  H7   H7   H  0  1  N  N  N  40.653   -4.991  30.390   2.416   3.691   0.877  H7   VBA  41  
VBA  H8   H8   H  0  1  N  N  N  37.672  -10.339  34.258   8.634  -0.043   2.727  H8   VBA  42  
VBA  H9   H9   H  0  1  N  N  N  34.276   -7.760  34.852   7.446  -2.465  -0.576  H9   VBA  43  
VBA  H10  H10  H  0  1  N  N  N  39.155   -8.359  34.096   7.657   1.933   1.630  H10  VBA  44  
VBA  H11  H11  H  0  1  N  N  N  35.237  -10.043  34.631   8.528  -2.242   1.625  H11  VBA  45  
VBA  H12  H12  H  0  1  N  N  N  35.774   -5.787  34.734   6.470  -0.489  -1.674  H12  VBA  46  
VBA  H13  H13  H  0  1  N  N  N  39.359   -5.905  34.891   6.952   2.944  -0.464  H13  VBA  47  
VBA  H14  H14  H  0  1  N  N  N  37.897   -4.867  34.780   6.453   1.932  -1.840  H14  VBA  48  
VBA  H15  H15  H  0  1  N  N  N  40.129   -2.932  29.913   3.753  -0.594  -0.848  H15  VBA  49  
VBA  H16  H16  H  0  1  N  N  N  40.152   -1.580  25.990   1.513  -3.966  -1.781  H16  VBA  50  
VBA  H17  H17  H  0  1  N  N  N  36.000   -3.669  27.906  -0.753   0.332   0.254  H17  VBA  51  
VBA  H18  H18  H  0  1  N  N  N  36.649   -3.542  25.076  -2.004  -1.852  -1.259  H18  VBA  52  
VBA  H19  H19  H  0  1  N  N  N  34.725   -5.503  26.549  -1.859  -1.729   1.752  H19  VBA  53  
VBA  H20  H20  H  0  1  N  N  N  36.762   -6.297  25.727  -2.196  -4.063   1.369  H20  VBA  54  
VBA  H21  H21  H  0  1  N  N  N  33.182   -5.341  24.757  -4.120  -1.573   2.057  H21  VBA  55  
VBA  H22  H22  H  0  1  N  N  N  34.765   -5.733  23.046  -4.214  -3.924   1.641  H22  VBA  56  
VBA  H23  H23  H  0  1  N  N  N  29.848   -2.832  26.570  -5.522   2.821   0.899  H23  VBA  57  
VBA  H24  H24  H  0  1  N  N  N  29.609   -1.886  25.261  -7.035   3.519   1.113  H24  VBA  58  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VBA  O6   C1   SING  N  N   1  
VBA  O33  S31  DOUB  N  N   2  
VBA  O30  S31  SING  N  N   3  
VBA  O30  C8   SING  N  N   4  
VBA  C1   C5   SING  N  N   5  
VBA  C1   C2   SING  N  N   6  
VBA  S31  O34  DOUB  N  N   7  
VBA  S31  N32  SING  N  N   8  
VBA  C5   C8   SING  N  N   9  
VBA  C5   C4   SING  N  N  10  
VBA  O7   C2   SING  N  N  11  
VBA  C2   C3   SING  N  N  12  
VBA  C3   C4   SING  N  N  13  
VBA  C3   N9   SING  N  N  14  
VBA  N11  C12  DOUB  Y  N  15  
VBA  N11  C10  SING  Y  N  16  
VBA  C12  N13  SING  Y  N  17  
VBA  N9   C10  SING  N  N  18  
VBA  C10  C15  DOUB  Y  N  19  
VBA  N13  C14  DOUB  Y  N  20  
VBA  C15  C14  SING  Y  N  21  
VBA  C15  C16  SING  N  N  22  
VBA  O18  C16  DOUB  N  N  23  
VBA  C16  C17  SING  N  N  24  
VBA  C17  C22  SING  Y  N  25  
VBA  C17  N19  DOUB  Y  N  26  
VBA  C22  C21  DOUB  Y  N  27  
VBA  N19  N20  SING  Y  N  28  
VBA  C21  N20  SING  Y  N  29  
VBA  N20  C23  SING  N  N  30  
VBA  C25  C26  DOUB  Y  N  31  
VBA  C25  C24  SING  Y  N  32  
VBA  C23  C24  SING  N  N  33  
VBA  C26  C27  SING  Y  N  34  
VBA  C24  C29  DOUB  Y  N  35  
VBA  C27  C28  DOUB  Y  N  36  
VBA  C29  C28  SING  Y  N  37  
VBA  C4   H1   SING  N  N  38  
VBA  C4   H2   SING  N  N  39  
VBA  C5   H3   SING  N  N  40  
VBA  C8   H4   SING  N  N  41  
VBA  C8   H5   SING  N  N  42  
VBA  C21  H6   SING  N  N  43  
VBA  C22  H7   SING  N  N  44  
VBA  C26  H8   SING  N  N  45  
VBA  C28  H9   SING  N  N  46  
VBA  C25  H10  SING  N  N  47  
VBA  C27  H11  SING  N  N  48  
VBA  C29  H12  SING  N  N  49  
VBA  C23  H13  SING  N  N  50  
VBA  C23  H14  SING  N  N  51  
VBA  C14  H15  SING  N  N  52  
VBA  C12  H16  SING  N  N  53  
VBA  N9   H17  SING  N  N  54  
VBA  C3   H18  SING  N  N  55  
VBA  C2   H19  SING  N  N  56  
VBA  O7   H20  SING  N  N  57  
VBA  C1   H21  SING  N  N  58  
VBA  O6   H22  SING  N  N  59  
VBA  N32  H23  SING  N  N  60  
VBA  N32  H24  SING  N  N  61  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VBA  SMILES            ACDLabs               12.01  "C1C(COS(=O)(N)=O)C(C(C1Nc2c(cncn2)C(c4ccn(Cc3ccccc3)n4)=O)O)O"  
VBA  InChI             InChI                 1.03   "InChI=1S/C21H24N6O6S/c22-34(31,32)33-11-14-8-17(20(30)18(14)28)25-21-15(9-23-12-24-21)19(29)16-6-7-27(26-16)10-13-4-2-1-3-5-13/h1-7,9,12,14,17-18,20,28,30H,8,10-11H2,(H2,22,31,32)(H,23,24,25)/t14-,17-,18-,20+/m1/s1"  
VBA  InChIKey          InChI                 1.03   AGIKMOLYLSSZIM-ZESCBINXSA-N  
VBA  SMILES_CANONICAL  CACTVS                3.385  "N[S](=O)(=O)OC[C@H]1C[C@@H](Nc2ncncc2C(=O)c3ccn(Cc4ccccc4)n3)[C@H](O)[C@@H]1O"  
VBA  SMILES            CACTVS                3.385  "N[S](=O)(=O)OC[CH]1C[CH](Nc2ncncc2C(=O)c3ccn(Cc4ccccc4)n3)[CH](O)[CH]1O"  
VBA  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1ccc(cc1)Cn2ccc(n2)C(=O)c3cncnc3N[C@@H]4C[C@@H]([C@H]([C@H]4O)O)COS(=O)(=O)N"  
VBA  SMILES            "OpenEye OEToolkits"  2.0.7  "c1ccc(cc1)Cn2ccc(n2)C(=O)c3cncnc3NC4CC(C(C4O)O)COS(=O)(=O)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VBA  "SYSTEMATIC NAME"  ACDLabs               12.01  "[(1R,2R,3S,4R)-4-{[5-(1-benzyl-1H-pyrazole-3-carbonyl)pyrimidin-4-yl]amino}-2,3-dihydroxycyclopentyl]methyl sulfamate"  
VBA  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "[(1~{R},2~{R},3~{S},4~{R})-2,3-bis(oxidanyl)-4-[[5-[1-(phenylmethyl)pyrazol-3-yl]carbonylpyrimidin-4-yl]amino]cyclopentyl]methyl sulfamate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VBA  "Create component"  2020-07-22  RCSB  
VBA  "Initial release"   2021-03-24  RCSB  
##
