data_VDW
#

_chem_comp.id                                   VDW
_chem_comp.name                                 "[(2~{S})-5-[[(2~{R})-1-(2-hydroxy-2-oxoethylamino)-1-oxidanylidene-3-sulfanyl-propan-2-yl]amino]-1-oxidanyl-1,5-bis(oxidanylidene)pentan-2-yl]azanium"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C10 H18 N3 O6 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   1
_chem_comp.pdbx_initial_date                    2021-05-07
_chem_comp.pdbx_modified_date                   2021-05-21
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       308.331
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    VDW
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6TK8
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VDW  N1    N1   N  1  1  N  N  N  20.852   5.450  -13.220  -4.751   2.226  -0.170  N1    VDW   1  
VDW  CA1   C1   C  0  1  N  N  S  19.681   4.744  -12.625  -4.783   0.775  -0.396  CA1   VDW   2  
VDW  C1    C2   C  0  1  N  N  N  19.473   3.417  -13.381  -5.992   0.187   0.283  C1    VDW   3  
VDW  O11   O1   O  0  1  N  N  N  18.334   3.178  -13.823  -6.542   0.796   1.171  O11   VDW   4  
VDW  O12   O2   O  0  1  N  N  N  20.474   2.643  -13.485  -6.459  -1.012  -0.097  O12   VDW   5  
VDW  CB1   C3   C  0  1  N  N  N  18.449   5.670  -12.545  -3.515   0.141   0.181  CB1   VDW   6  
VDW  CG1   C4   C  0  1  N  N  N  18.082   6.461  -13.803  -2.296   0.645  -0.594  CG1   VDW   7  
VDW  CD1   C5   C  0  1  N  N  N  17.200   7.645  -13.460  -1.047   0.021  -0.025  CD1   VDW   8  
VDW  OE1   O3   O  0  1  N  N  N  17.466   8.378  -12.517  -1.125  -0.751   0.907  OE1   VDW   9  
VDW  N2    N2   N  0  1  N  N  N  16.086   7.811  -14.183   0.156   0.320  -0.553  N2    VDW  10  
VDW  CA2   C6   C  0  1  N  N  R  15.385   9.081  -14.346   1.370  -0.287  -0.001  CA2   VDW  11  
VDW  C2    C7   C  0  1  N  N  N  14.490   9.551  -13.179   2.552   0.602  -0.290  C2    VDW  12  
VDW  O2    O4   O  0  1  N  N  N  13.739   8.768  -12.599   2.396   1.640  -0.898  O2    VDW  13  
VDW  CB2   C8   C  0  1  N  N  N  14.551   9.077  -15.616   1.593  -1.657  -0.643  CB2   VDW  14  
VDW  SG2   S1   S  0  1  N  N  N  14.203  10.723  -16.290   0.169  -2.727  -0.295  SG2   VDW  15  
VDW  N3    N3   N  0  1  N  N  N  14.537  10.850  -12.877   3.783   0.243   0.126  N3    VDW  16  
VDW  CA3   C9   C  0  1  N  N  N  13.670  11.439  -11.882   4.932   1.107  -0.155  CA3   VDW  17  
VDW  C3    C10  C  0  1  N  N  N  14.279  11.438  -10.482   6.181   0.483   0.413  C3    VDW  18  
VDW  O31   O5   O  0  1  N  N  N  15.334  10.789  -10.327   6.117  -0.575   0.994  O31   VDW  19  
VDW  O32   O6   O  0  1  N  N  N  13.685  12.099   -9.594   7.363   1.102   0.275  O32   VDW  20  
VDW  HN13  H1   H  0  0  N  N  N  21.000   6.314  -12.739  -3.941   2.620  -0.626  HN13  VDW  21  
VDW  HN11  H2   H  0  0  N  N  N  21.666   4.876  -13.133  -5.587   2.644  -0.551  HN11  VDW  22  
VDW  HN12  H3   H  0  0  N  N  N  20.675   5.633  -14.187  -4.703   2.411   0.820  HN12  VDW  23  
VDW  HA1   H4   H  0  1  N  N  N  19.948   4.481  -11.591  -4.834   0.575  -1.467  HA1   VDW  24  
VDW  H1    H5   H  0  1  N  N  N  20.219   1.856  -13.951  -7.238  -1.348   0.368  H1    VDW  25  
VDW  HB13  H6   H  0  0  N  N  N  18.634   6.397  -11.740  -3.418   0.416   1.231  HB13  VDW  26  
VDW  HB12  H7   H  0  0  N  N  N  17.582   5.045  -12.283  -3.579  -0.943   0.093  HB12  VDW  27  
VDW  HG13  H8   H  0  0  N  N  N  17.544   5.801  -14.499  -2.393   0.371  -1.644  HG13  VDW  28  
VDW  HG12  H9   H  0  0  N  N  N  19.003   6.825  -14.281  -2.232   1.730  -0.506  HG12  VDW  29  
VDW  HN2   H10  H  0  1  N  N  N  15.707   7.009  -14.644   0.219   0.937  -1.299  HN2   VDW  30  
VDW  HA2   H11  H  0  1  N  N  N  16.151   9.860  -14.478   1.259  -0.404   1.077  HA2   VDW  31  
VDW  HB23  H12  H  0  0  N  N  N  13.592   8.586  -15.396   1.704  -1.539  -1.721  HB23  VDW  32  
VDW  HB22  H13  H  0  0  N  N  N  15.092   8.500  -16.381   2.496  -2.109  -0.232  HB22  VDW  33  
VDW  HSG   H14  H  0  1  N  N  N  13.495  10.440  -17.343   0.498  -3.877  -0.909  HSG   VDW  34  
VDW  HN3   H15  H  0  1  N  N  N  15.193  11.435  -13.354   3.907  -0.587   0.613  HN3   VDW  35  
VDW  HA31  H16  H  0  0  N  N  N  13.460  12.479  -12.172   5.043   1.225  -1.233  HA31  VDW  36  
VDW  HA32  H17  H  0  0  N  N  N  12.730  10.869  -11.855   4.773   2.083   0.303  HA32  VDW  37  
VDW  H2    H18  H  0  1  N  N  N  14.163  12.032   -8.776   8.136   0.663   0.656  H2    VDW  38  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VDW  SG2  CB2   SING  N  N   1  
VDW  CB2  CA2   SING  N  N   2  
VDW  CA2  N2    SING  N  N   3  
VDW  CA2  C2    SING  N  N   4  
VDW  N2   CD1   SING  N  N   5  
VDW  O11  C1    DOUB  N  N   6  
VDW  CG1  CD1   SING  N  N   7  
VDW  CG1  CB1   SING  N  N   8  
VDW  O12  C1    SING  N  N   9  
VDW  CD1  OE1   DOUB  N  N  10  
VDW  C1   CA1   SING  N  N  11  
VDW  N1   CA1   SING  N  N  12  
VDW  C2   N3    SING  N  N  13  
VDW  C2   O2    DOUB  N  N  14  
VDW  N3   CA3   SING  N  N  15  
VDW  CA1  CB1   SING  N  N  16  
VDW  CA3  C3    SING  N  N  17  
VDW  C3   O31   DOUB  N  N  18  
VDW  C3   O32   SING  N  N  19  
VDW  N1   HN13  SING  N  N  20  
VDW  N1   HN11  SING  N  N  21  
VDW  N1   HN12  SING  N  N  22  
VDW  CA1  HA1   SING  N  N  23  
VDW  O12  H1    SING  N  N  24  
VDW  CB1  HB13  SING  N  N  25  
VDW  CB1  HB12  SING  N  N  26  
VDW  CG1  HG13  SING  N  N  27  
VDW  CG1  HG12  SING  N  N  28  
VDW  N2   HN2   SING  N  N  29  
VDW  CA2  HA2   SING  N  N  30  
VDW  CB2  HB23  SING  N  N  31  
VDW  CB2  HB22  SING  N  N  32  
VDW  SG2  HSG   SING  N  N  33  
VDW  N3   HN3   SING  N  N  34  
VDW  CA3  HA31  SING  N  N  35  
VDW  CA3  HA32  SING  N  N  36  
VDW  O32  H2    SING  N  N  37  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VDW  InChI             InChI                 1.03   "InChI=1S/C10H17N3O6S/c11-5(10(18)19)1-2-7(14)13-6(4-20)9(17)12-3-8(15)16/h5-6,20H,1-4,11H2,(H,12,17)(H,13,14)(H,15,16)(H,18,19)/p+1/t5-,6-/m0/s1"  
VDW  InChIKey          InChI                 1.03   RWSXRVCMGQZWBV-WDSKDSINSA-O  
VDW  SMILES_CANONICAL  CACTVS                3.385  "[NH3+][C@@H](CCC(=O)N[C@@H](CS)C(=O)NCC(O)=O)C(O)=O"  
VDW  SMILES            CACTVS                3.385  "[NH3+][CH](CCC(=O)N[CH](CS)C(=O)NCC(O)=O)C(O)=O"  
VDW  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C(CC(=O)N[C@@H](CS)C(=O)NCC(=O)O)[C@@H](C(=O)O)[NH3+]"  
VDW  SMILES            "OpenEye OEToolkits"  2.0.7  "C(CC(=O)NC(CS)C(=O)NCC(=O)O)C(C(=O)O)[NH3+]"  
#
_pdbx_chem_comp_identifier.comp_id          VDW
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "[(2~{S})-5-[[(2~{R})-1-(2-hydroxy-2-oxoethylamino)-1-oxidanylidene-3-sulfanyl-propan-2-yl]amino]-1-oxidanyl-1,5-bis(oxidanylidene)pentan-2-yl]azanium"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VDW  "Create component"  2021-05-07  PDBE  
VDW  "Initial release"   2021-05-26  RCSB  
##
