data_VJA
#

_chem_comp.id                                   VJA
_chem_comp.name                                 "N-[(benzyloxy)carbonyl]-L-valyl-N-{(2R)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-leucinamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C26 H40 N4 O6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-08-14
_chem_comp.pdbx_modified_date                   2021-10-08
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       504.619
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    VJA
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7JP0
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VJA  C1   C1   C  0  1  Y  N  N  -16.621  10.502  -2.588  10.133   1.679   1.020  C1   VJA   1  
VJA  C10  C2   C  0  1  N  N  N  -12.931  -1.542   2.344  -4.839  -2.299   1.566  C10  VJA   2  
VJA  C11  C3   C  0  1  N  N  S  -15.064   4.803  -0.471   2.115  -1.053  -0.428  C11  VJA   3  
VJA  C12  C4   C  0  1  N  N  N  -15.224   3.525   0.297   0.933  -0.343   0.180  C12  VJA   4  
VJA  C14  C5   C  0  1  N  N  S  -15.625   1.141   0.279  -1.429   0.255   0.181  C14  VJA   5  
VJA  C15  C6   C  0  1  N  N  N  -14.242   0.603   0.537  -2.700  -0.533  -0.005  C15  VJA   6  
VJA  C17  C7   C  0  1  N  N  R  -13.016  -0.053   2.701  -4.982  -1.087   0.643  C17  VJA   7  
VJA  C19  C8   C  0  1  N  N  N  -11.640   0.537   2.994  -6.209  -0.272   1.059  C19  VJA   8  
VJA  C2   C9   C  0  1  Y  N  N  -17.421   9.510  -3.158   9.854   0.342   1.235  C2   VJA   9  
VJA  C20  C10  C  0  1  N  N  S  -11.626   2.037   2.760  -6.424   0.869   0.062  C20  VJA  10  
VJA  C21  C11  C  0  1  N  N  N  -10.437   2.385   1.883  -7.642   1.727   0.477  C21  VJA  11  
VJA  C22  C12  C  0  1  N  N  N   -9.812   3.615   2.531  -8.780   1.076  -0.339  C22  VJA  12  
VJA  C24  C13  C  0  1  N  N  N  -11.394   2.818   4.014  -6.803   0.321  -1.296  C24  VJA  13  
VJA  C3   C14  C  0  1  Y  N  N  -18.126   8.648  -2.321   8.783  -0.252   0.595  C3   VJA  14  
VJA  C30  C15  C  0  1  N  N  N  -13.669   5.369  -0.305   2.055  -2.540  -0.073  C30  VJA  15  
VJA  C31  C16  C  0  1  N  N  N  -13.614   6.733  -0.993   0.757  -3.141  -0.616  C31  VJA  16  
VJA  C32  C17  C  0  1  N  N  N  -12.609   4.400  -0.816   3.251  -3.262  -0.696  C32  VJA  17  
VJA  C34  C18  C  0  1  N  N  N  -16.434   0.166  -0.572  -1.538   1.583  -0.572  C34  VJA  18  
VJA  C35  C19  C  0  1  N  N  N  -17.895   0.601  -0.693  -2.639   2.438   0.058  C35  VJA  19  
VJA  C36  C20  C  0  1  N  N  N  -18.588   0.668   0.666  -2.222   2.845   1.473  C36  VJA  20  
VJA  C37  C21  C  0  1  N  N  N  -18.662  -0.286  -1.684  -2.859   3.692  -0.790  C37  VJA  21  
VJA  C4   C22  C  0  1  Y  N  N  -18.045   8.768  -0.937   7.989   0.491  -0.259  C4   VJA  22  
VJA  C5   C23  C  0  1  Y  N  N  -17.238   9.751  -0.385   8.267   1.828  -0.473  C5   VJA  23  
VJA  C6   C24  C  0  1  Y  N  N  -16.525  10.615  -1.205   9.340   2.421   0.166  C6   VJA  24  
VJA  C7   C25  C  0  1  N  N  N  -18.819   7.842  -0.025   6.822  -0.158  -0.957  C7   VJA  25  
VJA  C9   C26  C  0  1  N  N  N  -17.148   6.020  -0.355   4.494  -0.560  -0.617  C9   VJA  26  
VJA  N10  N1   N  0  1  N  N  N  -15.928   5.798   0.096   3.355  -0.475   0.098  N10  VJA  27  
VJA  N13  N2   N  0  1  N  N  N  -15.585   2.438  -0.381  -0.297  -0.512  -0.344  N13  VJA  28  
VJA  N16  N3   N  0  1  N  N  N  -13.798   0.794   1.789  -3.783  -0.252   0.746  N16  VJA  29  
VJA  N23  N4   N  0  1  N  N  N  -10.415   3.697   3.846  -8.125   0.454  -1.497  N23  VJA  30  
VJA  O11  O1   O  0  1  N  N  N  -11.781  -1.789   1.514  -4.799  -1.861   2.925  O11  VJA  31  
VJA  O26  O2   O  0  1  N  N  N  -12.029   2.662   5.048  -6.026  -0.168  -2.089  O26  VJA  32  
VJA  O29  O3   O  0  1  N  N  N  -17.556   5.593  -1.424   4.493  -1.115  -1.697  O29  VJA  33  
VJA  O33  O4   O  0  1  N  N  N  -15.042   3.499   1.505   1.088   0.382   1.140  O33  VJA  34  
VJA  O38  O5   O  0  1  N  N  N  -13.605   0.100  -0.375  -2.748  -1.420  -0.831  O38  VJA  35  
VJA  O8   O6   O  0  1  N  N  N  -18.014   6.802   0.508   5.633  -0.029  -0.133  O8   VJA  36  
VJA  H1   H1   H  0  1  N  N  N  -16.075  11.184  -3.223  10.967   2.144   1.523  H1   VJA  37  
VJA  H2   H2   H  0  1  N  N  N  -13.841  -1.838   1.802  -5.690  -2.966   1.424  H2   VJA  38  
VJA  H3   H3   H  0  1  N  N  N  -12.846  -2.133   3.268  -3.918  -2.831   1.327  H3   VJA  39  
VJA  H4   H4   H  0  1  N  N  N  -15.284   4.641  -1.536   2.091  -0.936  -1.511  H4   VJA  40  
VJA  H5   H5   H  0  1  N  N  N  -16.136   1.251   1.247  -1.275   0.451   1.242  H5   VJA  41  
VJA  H6   H6   H  0  1  N  N  N  -13.549  -0.022   3.663  -5.103  -1.426  -0.386  H6   VJA  42  
VJA  H7   H7   H  0  1  N  N  N  -11.379   0.335   4.043  -7.088  -0.917   1.068  H7   VJA  43  
VJA  H8   H8   H  0  1  N  N  N  -10.898   0.064   2.334  -6.050   0.141   2.055  H8   VJA  44  
VJA  H9   H9   H  0  1  N  N  N  -17.492   9.412  -4.231  10.474  -0.238   1.902  H9   VJA  45  
VJA  H10  H10  H  0  1  N  N  N  -12.561   2.354   2.276  -5.528   1.485  -0.011  H10  VJA  46  
VJA  H11  H11  H  0  1  N  N  N  -10.766   2.614   0.859  -7.832   1.643   1.547  H11  VJA  47  
VJA  H12  H12  H  0  1  N  N  N   -9.718   1.553   1.860  -7.501   2.769   0.188  H12  VJA  48  
VJA  H13  H13  H  0  1  N  N  N   -8.722   3.496   2.613  -9.287   0.318   0.259  H13  VJA  49  
VJA  H14  H14  H  0  1  N  N  N  -10.039   4.518   1.945  -9.489   1.834  -0.669  H14  VJA  50  
VJA  H15  H15  H  0  1  N  N  N  -18.745   7.875  -2.753   8.566  -1.297   0.762  H15  VJA  51  
VJA  H16  H16  H  0  1  N  N  N  -13.492   5.527   0.769   2.083  -2.656   1.011  H16  VJA  52  
VJA  H17  H17  H  0  1  N  N  N  -14.400   7.383  -0.582   0.712  -2.994  -1.695  H17  VJA  53  
VJA  H18  H18  H  0  1  N  N  N  -12.630   7.192  -0.818   0.729  -4.208  -0.393  H18  VJA  54  
VJA  H19  H19  H  0  1  N  N  N  -13.772   6.605  -2.074  -0.096  -2.650  -0.147  H19  VJA  55  
VJA  H20  H20  H  0  1  N  N  N  -12.701   3.441  -0.284   4.176  -2.833  -0.309  H20  VJA  56  
VJA  H21  H21  H  0  1  N  N  N  -12.752   4.236  -1.894   3.208  -4.321  -0.443  H21  VJA  57  
VJA  H22  H22  H  0  1  N  N  N  -11.609   4.823  -0.639   3.222  -3.145  -1.779  H22  VJA  58  
VJA  H23  H23  H  0  1  N  N  N  -16.396  -0.830  -0.107  -0.587   2.113  -0.512  H23  VJA  59  
VJA  H24  H24  H  0  1  N  N  N  -15.991   0.118  -1.578  -1.781   1.390  -1.617  H24  VJA  60  
VJA  H25  H25  H  0  1  N  N  N  -17.895   1.620  -1.107  -3.564   1.863   0.103  H25  VJA  61  
VJA  H26  H26  H  0  1  N  N  N  -18.007   1.311   1.343  -1.338   3.481   1.422  H26  VJA  62  
VJA  H27  H27  H  0  1  N  N  N  -19.599   1.084   0.542  -3.036   3.392   1.948  H27  VJA  63  
VJA  H28  H28  H  0  1  N  N  N  -18.658  -0.344   1.092  -1.995   1.953   2.056  H28  VJA  64  
VJA  H29  H29  H  0  1  N  N  N  -19.707   0.053  -1.748  -3.156   3.402  -1.798  H29  VJA  65  
VJA  H30  H30  H  0  1  N  N  N  -18.193  -0.217  -2.677  -3.644   4.301  -0.341  H30  VJA  66  
VJA  H31  H31  H  0  1  N  N  N  -18.636  -1.330  -1.338  -1.934   4.267  -0.835  H31  VJA  67  
VJA  H32  H32  H  0  1  N  N  N  -17.164   9.845   0.688   7.647   2.408  -1.141  H32  VJA  68  
VJA  H33  H33  H  0  1  N  N  N  -15.895  11.376  -0.769   9.555   3.467   0.001  H33  VJA  69  
VJA  H34  H34  H  0  1  N  N  N  -19.231   8.431   0.808   6.654   0.333  -1.916  H34  VJA  70  
VJA  H35  H35  H  0  1  N  N  N  -19.643   7.391  -0.598   7.037  -1.213  -1.122  H35  VJA  71  
VJA  H36  H36  H  0  1  N  N  N  -15.593   6.345   0.863   3.355  -0.032   0.961  H36  VJA  72  
VJA  H37  H37  H  0  1  N  N  N  -15.830   2.513  -1.348  -0.433  -1.143  -1.069  H37  VJA  73  
VJA  H38  H38  H  0  1  N  N  N  -14.047   1.682   2.175  -3.769   0.504   1.354  H38  VJA  74  
VJA  H39  H39  H  0  1  N  N  N  -10.125   4.345   4.550  -8.587   0.176  -2.303  H39  VJA  75  
VJA  H40  H40  H  0  1  N  N  N  -11.738  -2.713   1.299  -4.709  -2.579   3.567  H40  VJA  76  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VJA  C2   C1   DOUB  Y  N   1  
VJA  C2   C3   SING  Y  N   2  
VJA  C1   C6   SING  Y  N   3  
VJA  C3   C4   DOUB  Y  N   4  
VJA  C37  C35  SING  N  N   5  
VJA  O29  C9   DOUB  N  N   6  
VJA  C6   C5   DOUB  Y  N   7  
VJA  C31  C30  SING  N  N   8  
VJA  C4   C5   SING  Y  N   9  
VJA  C4   C7   SING  N  N  10  
VJA  C32  C30  SING  N  N  11  
VJA  C35  C34  SING  N  N  12  
VJA  C35  C36  SING  N  N  13  
VJA  C34  C14  SING  N  N  14  
VJA  C11  C30  SING  N  N  15  
VJA  C11  N10  SING  N  N  16  
VJA  C11  C12  SING  N  N  17  
VJA  N13  C14  SING  N  N  18  
VJA  N13  C12  SING  N  N  19  
VJA  O38  C15  DOUB  N  N  20  
VJA  C9   N10  SING  N  N  21  
VJA  C9   O8   SING  N  N  22  
VJA  C7   O8   SING  N  N  23  
VJA  C14  C15  SING  N  N  24  
VJA  C12  O33  DOUB  N  N  25  
VJA  C15  N16  SING  N  N  26  
VJA  O11  C10  SING  N  N  27  
VJA  N16  C17  SING  N  N  28  
VJA  C21  C22  SING  N  N  29  
VJA  C21  C20  SING  N  N  30  
VJA  C10  C17  SING  N  N  31  
VJA  C22  N23  SING  N  N  32  
VJA  C17  C19  SING  N  N  33  
VJA  C20  C19  SING  N  N  34  
VJA  C20  C24  SING  N  N  35  
VJA  N23  C24  SING  N  N  36  
VJA  C24  O26  DOUB  N  N  37  
VJA  C1   H1   SING  N  N  38  
VJA  C10  H2   SING  N  N  39  
VJA  C10  H3   SING  N  N  40  
VJA  C11  H4   SING  N  N  41  
VJA  C14  H5   SING  N  N  42  
VJA  C17  H6   SING  N  N  43  
VJA  C19  H7   SING  N  N  44  
VJA  C19  H8   SING  N  N  45  
VJA  C2   H9   SING  N  N  46  
VJA  C20  H10  SING  N  N  47  
VJA  C21  H11  SING  N  N  48  
VJA  C21  H12  SING  N  N  49  
VJA  C22  H13  SING  N  N  50  
VJA  C22  H14  SING  N  N  51  
VJA  C3   H15  SING  N  N  52  
VJA  C30  H16  SING  N  N  53  
VJA  C31  H17  SING  N  N  54  
VJA  C31  H18  SING  N  N  55  
VJA  C31  H19  SING  N  N  56  
VJA  C32  H20  SING  N  N  57  
VJA  C32  H21  SING  N  N  58  
VJA  C32  H22  SING  N  N  59  
VJA  C34  H23  SING  N  N  60  
VJA  C34  H24  SING  N  N  61  
VJA  C35  H25  SING  N  N  62  
VJA  C36  H26  SING  N  N  63  
VJA  C36  H27  SING  N  N  64  
VJA  C36  H28  SING  N  N  65  
VJA  C37  H29  SING  N  N  66  
VJA  C37  H30  SING  N  N  67  
VJA  C37  H31  SING  N  N  68  
VJA  C5   H32  SING  N  N  69  
VJA  C6   H33  SING  N  N  70  
VJA  C7   H34  SING  N  N  71  
VJA  C7   H35  SING  N  N  72  
VJA  N10  H36  SING  N  N  73  
VJA  N13  H37  SING  N  N  74  
VJA  N16  H38  SING  N  N  75  
VJA  N23  H39  SING  N  N  76  
VJA  O11  H40  SING  N  N  77  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VJA  SMILES            ACDLabs               12.01  "c1ccc(cc1)COC(NC(C(C)C)C(=O)NC(C(NC(CO)CC2C(=O)NCC2)=O)CC(C)C)=O"  
VJA  InChI             InChI                 1.03   "InChI=1S/C26H40N4O6/c1-16(2)12-21(24(33)28-20(14-31)13-19-10-11-27-23(19)32)29-25(34)22(17(3)4)30-26(35)36-15-18-8-6-5-7-9-18/h5-9,16-17,19-22,31H,10-15H2,1-4H3,(H,27,32)(H,28,33)(H,29,34)(H,30,35)/t19-,20+,21-,22-/m0/s1"  
VJA  InChIKey          InChI                 1.03   GLZAWCKOCLSXEU-LRSLUSHPSA-N  
VJA  SMILES_CANONICAL  CACTVS                3.385  "CC(C)C[C@H](NC(=O)[C@@H](NC(=O)OCc1ccccc1)C(C)C)C(=O)N[C@@H](CO)C[C@@H]2CCNC2=O"  
VJA  SMILES            CACTVS                3.385  "CC(C)C[CH](NC(=O)[CH](NC(=O)OCc1ccccc1)C(C)C)C(=O)N[CH](CO)C[CH]2CCNC2=O"  
VJA  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(C)C[C@@H](C(=O)N[C@H](C[C@@H]1CCNC1=O)CO)NC(=O)[C@H](C(C)C)NC(=O)OCc2ccccc2"  
VJA  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)CC(C(=O)NC(CC1CCNC1=O)CO)NC(=O)C(C(C)C)NC(=O)OCc2ccccc2"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VJA  "SYSTEMATIC NAME"  ACDLabs               12.01  "N-[(benzyloxy)carbonyl]-L-valyl-N-{(2R)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-leucinamide"  
VJA  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(phenylmethyl) ~{N}-[(2~{S})-3-methyl-1-[[(2~{S})-4-methyl-1-oxidanylidene-1-[[(2~{R})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]pentan-2-yl]amino]-1-oxidanylidene-butan-2-yl]carbamate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VJA  "Create component"  2020-08-14  RCSB  
VJA  "Initial release"   2021-10-13  RCSB  
##
