data_VNK
#

_chem_comp.id                                   VNK
_chem_comp.name                                 "N-hexanoyl-L-valyl-N~1~-[(3S,4S)-3-hydroxy-2,6-dimethylheptan-4-yl]-N~5~,N~5~-dimethyl-L-glutamamide"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C27 H52 N4 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "vinylketone carmaphycin analogue VNK1, double bound form"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2012-11-01
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       512.726
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    VNK
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4HNP
_chem_comp.pdbx_subcomponent_list               "6NA VAL QMM 05U"
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VNK  C27  C27  C  0  1  N  N  N  12.421  -136.590  22.479   -6.036  -0.503  -0.430  CA    6NA   1  
VNK  C1   C1   C  0  1  N  N  N  11.924  -137.453  21.334   -4.747  -1.039   0.137  C     6NA   2  
VNK  O1   O1   O  0  1  N  N  N  12.472  -138.514  21.060   -4.753  -1.652   1.183  O     6NA   3  
VNK  C28  C28  C  0  1  N  N  N  12.713  -137.415  23.730   -7.194  -0.868   0.502  CB    6NA   4  
VNK  C29  C29  C  0  1  N  N  N  13.530  -136.607  24.734   -8.503  -0.323  -0.074  CG    6NA   5  
VNK  C30  C30  C  0  1  N  N  N  13.491  -137.244  26.119   -9.660  -0.688   0.858  CD    6NA   6  
VNK  C31  C31  C  0  1  N  N  N  14.126  -136.337  27.150  -10.969  -0.144   0.282  C6    6NA   7  
VNK  N1   N1   N  0  1  N  N  N  10.874  -136.967  20.670   -3.587  -0.837  -0.519  N     VAL   8  
VNK  C2   C2   C  0  1  N  N  S  10.242  -137.611  19.531   -2.334  -1.358   0.032  CA    VAL   9  
VNK  C5   C5   C  0  1  N  N  N  11.068  -137.335  18.297   -1.179  -0.536  -0.481  C     VAL  10  
VNK  O3   O3   O  0  1  N  N  N  11.526  -136.214  18.123   -1.320   0.160  -1.464  O     VAL  11  
VNK  C3   C3   C  0  1  N  N  N   8.788  -137.120  19.478   -2.154  -2.815  -0.399  CB    VAL  12  
VNK  C26  C26  C  0  1  N  N  N   8.277  -136.737  18.094   -0.901  -3.392   0.264  CG1   VAL  13  
VNK  C4   C4   C  0  1  N  N  N   7.854  -138.141  20.114   -3.377  -3.628   0.028  CG2   VAL  14  
VNK  C10  C10  C  0  1  N  N  N  11.284  -138.195  14.966    2.434  -0.517   0.073  C     QMM  15  
VNK  C9   C9   C  0  1  N  N  N  15.482  -139.364  17.325   -0.121   3.728  -0.108  CD    QMM  16  
VNK  C8   C8   C  0  1  N  N  N  13.999  -139.172  17.523   -0.094   2.288  -0.552  CG    QMM  17  
VNK  N2   N2   N  0  1  N  N  N  11.290  -138.351  17.452    0.009  -0.574   0.154  N     QMM  18  
VNK  O7   O7   O  0  1  N  N  N  15.988  -140.454  17.552    0.755   4.157   0.612  OE1   QMM  19  
VNK  N5   N5   N  0  1  N  N  N  16.197  -138.309  16.925   -1.117   4.540  -0.516  NE2   QMM  20  
VNK  C24  C24  C  0  1  N  N  N  16.765  -138.206  15.586   -2.172   4.022  -1.390  CH1   QMM  21  
VNK  C25  C25  C  0  1  N  N  N  16.490  -137.184  17.805   -1.143   5.939  -0.084  CH2   QMM  22  
VNK  C6   C6   C  0  1  N  N  S  12.099  -138.204  16.239    1.163   0.133  -0.409  CA    QMM  23  
VNK  C7   C7   C  0  1  N  N  N  13.245  -139.213  16.203    1.135   1.595   0.041  CB    QMM  24  
VNK  O2   O2   O  0  1  N  N  N  10.119  -138.574  14.976    2.382  -1.476   0.813  O     QMM  25  
VNK  N3   N3   N  0  1  N  N  N  11.907  -137.744  13.868    3.629  -0.033  -0.319  N3    05U  26  
VNK  C11  C11  C  0  1  N  N  S  11.274  -137.601  12.566    4.861  -0.729   0.059  C11   05U  27  
VNK  C12  C12  C  0  1  N  N  N  11.220  -136.076  12.376    5.199  -1.780  -0.999  C12   05U  28  
VNK  C13  C13  C  0  1  N  N  N   9.875  -135.367  12.550    6.405  -2.601  -0.537  C13   05U  29  
VNK  C15  C15  C  0  1  N  N  N   9.080  -135.789  13.776    6.027  -3.404   0.709  C15   05U  30  
VNK  C14  C14  C  0  1  N  N  N  10.079  -133.858  12.596    6.827  -3.559  -1.653  C14   05U  31  
VNK  C16  C16  C  0  1  N  N  S  11.991  -138.271  11.373    6.007   0.280   0.159  C16   05U  32  
VNK  O6   O6   O  0  1  N  N  N  13.394  -137.964  11.473    6.190   0.920  -1.106  O6    05U  33  
VNK  C17  C17  C  0  1  N  N  N  11.822  -139.808  11.201    5.670   1.332   1.218  C17   05U  34  
VNK  C23  C23  C  0  1  N  N  N  10.527  -140.292  11.840    5.473   0.648   2.572  C23   05U  35  
VNK  C18  C18  C  0  1  N  N  N  12.935  -140.556  11.927    6.815   2.341   1.318  C18   05U  36  
VNK  H22  H22  H  0  1  N  N  N  13.344  -136.081  22.166   -5.970   0.581  -0.521  HAC1  6NA  37  
VNK  H23  H23  H  0  1  N  N  N  11.652  -135.841  22.719   -6.210  -0.940  -1.413  HAC2  6NA  38  
VNK  H24  H24  H  0  1  N  N  N  11.762  -137.713  24.196   -7.260  -1.952   0.592  HBC1  6NA  39  
VNK  H25  H25  H  0  1  N  N  N  13.279  -138.314  23.445   -7.020  -0.431   1.485  HBC2  6NA  40  
VNK  H26  H26  H  0  1  N  N  N  14.574  -136.559  24.391   -8.437   0.761  -0.164  HGC1  6NA  41  
VNK  H27  H27  H  0  1  N  N  N  13.117  -135.589  24.796   -8.677  -0.760  -1.057  HGC2  6NA  42  
VNK  H28  H28  H  0  1  N  N  N  12.444  -137.431  26.400   -9.726  -1.772   0.949  HDC1  6NA  43  
VNK  H29  H29  H  0  1  N  N  N  14.039  -138.197  26.092   -9.486  -0.251   1.842  HDC2  6NA  44  
VNK  H30  H30  H  0  1  N  N  N  14.085  -136.819  28.138  -10.903   0.941   0.192  H6C1  6NA  45  
VNK  H31  H31  H  0  1  N  N  N  15.175  -136.150  26.877  -11.143  -0.581  -0.701  H6C2  6NA  46  
VNK  H32  H32  H  0  1  N  N  N  13.580  -135.383  27.185  -11.794  -0.403   0.946  H6C3  6NA  47  
VNK  H21  H21  H  0  1  N  N  N  10.494  -136.095  20.979   -3.582  -0.346  -1.356  H     VAL  48  
VNK  H13  H13  H  0  1  N  N  N  10.226  -138.698  19.698   -2.364  -1.302   1.120  HA    VAL  49  
VNK  H14  H14  H  0  1  N  N  N   8.738  -136.213  20.098   -2.046  -2.862  -1.482  HB    VAL  50  
VNK  H15  H15  H  0  1  N  N  N   7.232  -136.401  18.168   -0.964  -3.251   1.343  HG11  VAL  51  
VNK  H16  H16  H  0  1  N  N  N   8.895  -135.923  17.687   -0.829  -4.456   0.040  HG12  VAL  52  
VNK  H17  H17  H  0  1  N  N  N   8.335  -137.610  17.427   -0.019  -2.879  -0.119  HG13  VAL  53  
VNK  H18  H18  H  0  1  N  N  N   8.230  -138.411  21.112   -4.270  -3.217  -0.444  HG21  VAL  54  
VNK  H19  H19  H  0  1  N  N  N   6.847  -137.709  20.207   -3.249  -4.666  -0.279  HG22  VAL  55  
VNK  H20  H20  H  0  1  N  N  N   7.810  -139.041  19.483   -3.485  -3.580   1.112  HG23  VAL  56  
VNK  H7   H7   H  0  1  N  N  N  13.827  -138.197  18.002   -0.997   1.784  -0.207  HG1   QMM  57  
VNK  H8   H8   H  0  1  N  N  N  13.620  -139.973  18.175   -0.045   2.244  -1.640  HG2   QMM  58  
VNK  H12  H12  H  0  1  N  N  N  10.888  -139.244  17.657    0.101  -1.069   0.983  H     QMM  59  
VNK  H4   H4   H  0  1  N  N  N  17.308  -137.254  15.490   -2.987   3.629  -0.783  HH1   QMM  60  
VNK  H5   H5   H  0  1  N  N  N  17.458  -139.043  15.417   -2.546   4.827  -2.023  HH1A  QMM  61  
VNK  H6   H6   H  0  1  N  N  N  15.957  -138.243  14.841   -1.768   3.226  -2.015  HH1B  QMM  62  
VNK  H1   H1   H  0  1  N  N  N  16.022  -137.353  18.786   -0.597   6.551  -0.802  HH2   QMM  63  
VNK  H2   H2   H  0  1  N  N  N  17.579  -137.090  17.930   -2.177   6.282  -0.027  HH2A  QMM  64  
VNK  H3   H3   H  0  1  N  N  N  16.091  -136.259  17.363   -0.677   6.026   0.897  HH2B  QMM  65  
VNK  H11  H11  H  0  1  N  N  N  12.574  -137.214  16.300    1.121   0.087  -1.497  HA    QMM  66  
VNK  H9   H9   H  0  1  N  N  N  12.839  -140.223  16.044    2.038   2.098  -0.303  HB2   QMM  67  
VNK  H10  H10  H  0  1  N  N  N  13.931  -138.960  15.381    1.087   1.639   1.130  HB3   QMM  68  
VNK  H33  H33  H  0  1  N  N  N  12.871  -137.489  13.949    3.673   0.777  -0.852  H33   05U  69  
VNK  H34  H34  H  0  1  N  N  N  10.244  -137.984  12.612    4.722  -1.216   1.024  H34   05U  70  
VNK  H35  H35  H  0  1  N  N  N  11.570  -135.863  11.355    4.343  -2.440  -1.142  H35   05U  71  
VNK  H36  H36  H  0  1  N  N  N  11.917  -135.633  13.102    5.436  -1.285  -1.941  H36   05U  72  
VNK  H37  H37  H  0  1  N  N  N   9.265  -135.593  11.663    7.231  -1.931  -0.301  H37   05U  73  
VNK  H38  H38  H  0  1  N  N  N   8.135  -135.227  13.812    5.255  -4.130   0.453  H38   05U  74  
VNK  H39  H39  H  0  1  N  N  N   8.864  -136.866  13.720    6.907  -3.926   1.085  H39   05U  75  
VNK  H40  H40  H  0  1  N  N  N   9.666  -135.580  14.683    5.649  -2.728   1.477  H40   05U  76  
VNK  H41  H41  H  0  1  N  N  N   9.106  -133.360  12.721    7.096  -2.987  -2.540  H41   05U  77  
VNK  H42  H42  H  0  1  N  N  N  10.734  -133.602  13.442    7.686  -4.144  -1.323  H42   05U  78  
VNK  H43  H43  H  0  1  N  N  N  10.545  -133.522  11.658    6.001  -4.229  -1.889  H43   05U  79  
VNK  H44  H44  H  0  1  N  N  N  11.600  -137.802  10.458    6.924  -0.237   0.441  H44   05U  80  
VNK  H45  H45  H  0  1  N  N  N  13.507  -137.027  11.578    5.412   1.401  -1.419  H45   05U  81  
VNK  H46  H46  H  0  1  N  N  N  11.833  -140.063  10.131    4.753   1.850   0.936  H46   05U  82  
VNK  H47  H47  H  0  1  N  N  N  10.434  -141.380  11.703    4.657  -0.071   2.501  H47   05U  83  
VNK  H48  H48  H  0  1  N  N  N  10.538  -140.057  12.915    6.390   0.130   2.854  H48   05U  84  
VNK  H49  H49  H  0  1  N  N  N   9.673  -139.789  11.364    5.233   1.397   3.326  H49   05U  85  
VNK  H50  H50  H  0  1  N  N  N  12.797  -141.639  11.793    6.955   2.829   0.353  H50   05U  86  
VNK  H51  H51  H  0  1  N  N  N  13.909  -140.256  11.513    6.575   3.091   2.072  H51   05U  87  
VNK  H52  H52  H  0  1  N  N  N  12.902  -140.312  12.999    7.732   1.824   1.599  H52   05U  88  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VNK  C17  C16  SING  N  N   1  
VNK  C17  C23  SING  N  N   2  
VNK  C17  C18  SING  N  N   3  
VNK  C16  O6   SING  N  N   4  
VNK  C16  C11  SING  N  N   5  
VNK  C12  C13  SING  N  N   6  
VNK  C12  C11  SING  N  N   7  
VNK  C13  C14  SING  N  N   8  
VNK  C13  C15  SING  N  N   9  
VNK  C11  N3   SING  N  N  10  
VNK  N3   C10  SING  N  N  11  
VNK  C10  O2   DOUB  N  N  12  
VNK  C10  C6   SING  N  N  13  
VNK  C24  N5   SING  N  N  14  
VNK  C7   C6   SING  N  N  15  
VNK  C7   C8   SING  N  N  16  
VNK  C6   N2   SING  N  N  17  
VNK  N5   C9   SING  N  N  18  
VNK  N5   C25  SING  N  N  19  
VNK  C9   C8   SING  N  N  20  
VNK  C9   O7   DOUB  N  N  21  
VNK  N2   C5   SING  N  N  22  
VNK  C26  C3   SING  N  N  23  
VNK  O3   C5   DOUB  N  N  24  
VNK  C5   C2   SING  N  N  25  
VNK  C3   C2   SING  N  N  26  
VNK  C3   C4   SING  N  N  27  
VNK  C2   N1   SING  N  N  28  
VNK  N1   C1   SING  N  N  29  
VNK  O1   C1   DOUB  N  N  30  
VNK  C1   C27  SING  N  N  31  
VNK  C27  C28  SING  N  N  32  
VNK  C28  C29  SING  N  N  33  
VNK  C29  C30  SING  N  N  34  
VNK  C30  C31  SING  N  N  35  
VNK  C25  H1   SING  N  N  36  
VNK  C25  H2   SING  N  N  37  
VNK  C25  H3   SING  N  N  38  
VNK  C24  H4   SING  N  N  39  
VNK  C24  H5   SING  N  N  40  
VNK  C24  H6   SING  N  N  41  
VNK  C8   H7   SING  N  N  42  
VNK  C8   H8   SING  N  N  43  
VNK  C7   H9   SING  N  N  44  
VNK  C7   H10  SING  N  N  45  
VNK  C6   H11  SING  N  N  46  
VNK  N2   H12  SING  N  N  47  
VNK  C2   H13  SING  N  N  48  
VNK  C3   H14  SING  N  N  49  
VNK  C26  H15  SING  N  N  50  
VNK  C26  H16  SING  N  N  51  
VNK  C26  H17  SING  N  N  52  
VNK  C4   H18  SING  N  N  53  
VNK  C4   H19  SING  N  N  54  
VNK  C4   H20  SING  N  N  55  
VNK  N1   H21  SING  N  N  56  
VNK  C27  H22  SING  N  N  57  
VNK  C27  H23  SING  N  N  58  
VNK  C28  H24  SING  N  N  59  
VNK  C28  H25  SING  N  N  60  
VNK  C29  H26  SING  N  N  61  
VNK  C29  H27  SING  N  N  62  
VNK  C30  H28  SING  N  N  63  
VNK  C30  H29  SING  N  N  64  
VNK  C31  H30  SING  N  N  65  
VNK  C31  H31  SING  N  N  66  
VNK  C31  H32  SING  N  N  67  
VNK  N3   H33  SING  N  N  68  
VNK  C11  H34  SING  N  N  69  
VNK  C12  H35  SING  N  N  70  
VNK  C12  H36  SING  N  N  71  
VNK  C13  H37  SING  N  N  72  
VNK  C15  H38  SING  N  N  73  
VNK  C15  H39  SING  N  N  74  
VNK  C15  H40  SING  N  N  75  
VNK  C14  H41  SING  N  N  76  
VNK  C14  H42  SING  N  N  77  
VNK  C14  H43  SING  N  N  78  
VNK  C16  H44  SING  N  N  79  
VNK  O6   H45  SING  N  N  80  
VNK  C17  H46  SING  N  N  81  
VNK  C23  H47  SING  N  N  82  
VNK  C23  H48  SING  N  N  83  
VNK  C23  H49  SING  N  N  84  
VNK  C18  H50  SING  N  N  85  
VNK  C18  H51  SING  N  N  86  
VNK  C18  H52  SING  N  N  87  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VNK  SMILES            ACDLabs               12.01  "O=C(NC(CC(C)C)C(O)C(C)C)C(NC(=O)C(NC(=O)CCCCC)C(C)C)CCC(=O)N(C)C"  
VNK  InChI             InChI                 1.03   "InChI=1S/C27H52N4O5/c1-10-11-12-13-22(32)30-24(18(4)5)27(36)28-20(14-15-23(33)31(8)9)26(35)29-21(16-17(2)3)25(34)19(6)7/h17-21,24-25,34H,10-16H2,1-9H3,(H,28,36)(H,29,35)(H,30,32)/t20-,21-,24-,25-/m0/s1"  
VNK  InChIKey          InChI                 1.03   NHNWMUWCUHYJIR-NBMBROAQSA-N  
VNK  SMILES_CANONICAL  CACTVS                3.370  "CCCCCC(=O)N[C@@H](C(C)C)C(=O)N[C@@H](CCC(=O)N(C)C)C(=O)N[C@@H](CC(C)C)[C@@H](O)C(C)C"  
VNK  SMILES            CACTVS                3.370  "CCCCCC(=O)N[CH](C(C)C)C(=O)N[CH](CCC(=O)N(C)C)C(=O)N[CH](CC(C)C)[CH](O)C(C)C"  
VNK  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "CCCCCC(=O)N[C@@H](C(C)C)C(=O)N[C@@H](CCC(=O)N(C)C)C(=O)N[C@@H](CC(C)C)[C@H](C(C)C)O"  
VNK  SMILES            "OpenEye OEToolkits"  1.7.6  "CCCCCC(=O)NC(C(C)C)C(=O)NC(CCC(=O)N(C)C)C(=O)NC(CC(C)C)C(C(C)C)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VNK  "SYSTEMATIC NAME"  ACDLabs               12.01  "N-hexanoyl-L-valyl-N~1~-[(3S,4S)-3-hydroxy-2,6-dimethylheptan-4-yl]-N~5~,N~5~-dimethyl-L-glutamamide"  
VNK  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "(2S)-N-[(3S,4S)-2,6-dimethyl-3-oxidanyl-heptan-4-yl]-2-[[(2S)-2-(hexanoylamino)-3-methyl-butanoyl]amino]-N',N'-dimethyl-pentanediamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VNK  "Create component"  2012-11-01  RCSB  
VNK  "Initial release"   2014-01-29  RCSB  
VNK  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     VNK
_pdbx_chem_comp_synonyms.name        "vinylketone carmaphycin analogue VNK1, double bound form"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
