data_VUB
# 
_chem_comp.id                                    VUB 
_chem_comp.name                                  "2-[4-[(4-hydroxyphenyl)methyl]-2-(3-methylbutanimidoyl)-5-oxidanyl-imidazol-1-yl]ethanoic acid" 
_chem_comp.type                                  "L-peptide linking" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C17 H21 N3 O4" 
_chem_comp.mon_nstd_parent_comp_id               LEU,TYR,GLY 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-04-05 
_chem_comp.pdbx_modified_date                    2023-04-07 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        331.366 
_chem_comp.one_letter_code                       LYG 
_chem_comp.three_letter_code                     VUB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7Q6B 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VUB C    C1  C 0 1 N N N -13.261 -6.926  -19.038 1.975  -2.031 0.996  C    VUB 1  
VUB O    O1  O 0 1 N N N -12.020 -6.748  -18.657 1.185  -1.406 1.664  O    VUB 2  
VUB CA3  C2  C 0 1 N N N -13.573 -7.817  -20.274 1.998  -1.860 -0.501 CA3  VUB 3  
VUB N3   N1  N 0 1 Y N N -14.890 -7.742  -20.931 0.975  -0.889 -0.897 N3   VUB 4  
VUB C1   C3  C 0 1 Y N N -15.609 -6.716  -21.533 1.110  0.477  -0.922 C1   VUB 5  
VUB CA1  C4  C 0 1 N N N -15.222 -5.292  -21.728 2.315  1.227  -0.553 CA1  VUB 6  
VUB CB1  C5  C 0 1 N N N -16.173 -4.314  -22.397 3.583  0.492  -0.201 CB1  VUB 7  
VUB CG1  C6  C 0 1 N N N -16.650 -3.187  -21.469 4.636  1.492  0.280  CG1  VUB 8  
VUB CD4  C7  C 0 1 N N N -17.724 -2.405  -22.209 4.168  2.138  1.585  CD4  VUB 9  
VUB CD3  C8  C 0 1 N N N -15.574 -2.206  -20.974 5.960  0.764  0.518  CD3  VUB 10 
VUB N    N2  N 0 1 N N N -14.030 -4.864  -21.578 2.290  2.524  -0.529 N    VUB 11 
VUB C2   C9  C 0 1 Y N N -15.680 -8.811  -21.165 -0.292 -1.171 -1.317 C2   VUB 12 
VUB O2   O2  O 0 1 N N N -15.241 -10.031 -20.701 -0.844 -2.402 -1.447 O2   VUB 13 
VUB CA2  C10 C 0 1 Y N N -16.903 -8.486  -21.846 -0.897 0.021  -1.581 CA2  VUB 14 
VUB N2   N3  N 0 1 Y N N -16.804 -7.172  -22.062 -0.027 0.998  -1.334 N2   VUB 15 
VUB CB2  C11 C 0 1 N N N -18.132 -9.152  -22.524 -2.309 0.202  -2.073 CB2  VUB 16 
VUB CG2  C12 C 0 1 Y N N -18.367 -10.579 -22.307 -3.240 0.327  -0.895 CG2  VUB 17 
VUB CD1  C13 C 0 1 Y N N -19.486 -11.219 -21.778 -3.513 1.572  -0.359 CD1  VUB 18 
VUB CE1  C14 C 0 1 Y N N -19.366 -12.594 -21.454 -4.365 1.689  0.721  CE1  VUB 19 
VUB CD2  C15 C 0 1 Y N N -17.216 -11.321 -22.539 -3.825 -0.804 -0.354 CD2  VUB 20 
VUB CE2  C16 C 0 1 Y N N -17.148 -12.645 -22.197 -4.679 -0.692 0.726  CE2  VUB 21 
VUB CZ   C17 C 0 1 Y N N -18.209 -13.293 -21.670 -4.949 0.555  1.269  CZ   VUB 22 
VUB OH   O3  O 0 1 N N N -18.033 -14.587 -21.388 -5.789 0.668  2.331  OH   VUB 23 
VUB OXT  O4  O 0 1 N Y N -14.296 -6.429  -18.448 2.836  -2.873 1.589  OXT  VUB 24 
VUB HA3  H1  H 0 1 N N N -13.439 -8.861  -19.953 2.979  -1.500 -0.811 HA3  VUB 25 
VUB HA3A H2  H 0 0 N N N -12.823 -7.569  -21.040 1.795  -2.818 -0.979 HA3A VUB 26 
VUB HB1  H4  H 0 1 N N N -15.658 -3.861  -23.257 3.377  -0.228 0.591  HB1  VUB 27 
VUB HB1A H5  H 0 0 N N N -17.054 -4.871  -22.749 3.955  -0.032 -1.081 HB1A VUB 28 
VUB HG1  H6  H 0 1 N N N -17.114 -3.651  -20.586 4.777  2.263  -0.478 HG1  VUB 29 
VUB HD4  H7  H 0 1 N N N -18.089 -1.587  -21.570 4.918  2.851  1.927  HD4  VUB 30 
VUB HD4A H8  H 0 0 N N N -17.301 -1.987  -23.134 3.224  2.658  1.415  HD4A VUB 31 
VUB HD4B H9  H 0 0 N N N -18.559 -3.076  -22.458 4.027  1.367  2.342  HD4B VUB 32 
VUB HD3  H10 H 0 1 N N N -16.038 -1.451  -20.322 6.294  0.303  -0.412 HD3  VUB 33 
VUB HD3A H11 H 0 0 N N N -14.808 -2.757  -20.409 6.710  1.476  0.860  HD3A VUB 34 
VUB HD3B H12 H 0 0 N N N -15.107 -1.708  -21.837 5.819  -0.008 1.275  HD3B VUB 35 
VUB HN   H13 H 0 1 N Y N -13.400 -5.595  -21.317 1.456  2.996  -0.683 HN   VUB 36 
VUB HB2  H14 H 0 1 N N N -18.024 -9.003  -23.608 -2.370 1.105  -2.681 HB2  VUB 37 
VUB H15  H15 H 0 1 N N N -19.026 -8.619  -22.168 -2.598 -0.660 -2.675 H15  VUB 38 
VUB HD1  H16 H 0 1 N N N -20.412 -10.686 -21.620 -3.058 2.454  -0.785 HD1  VUB 39 
VUB HE1  H17 H 0 1 N N N -20.214 -13.106 -21.023 -4.577 2.661  1.140  HE1  VUB 40 
VUB HD2  H18 H 0 1 N N N -16.361 -10.846 -22.997 -3.613 -1.775 -0.777 HD2  VUB 41 
VUB HE2  H19 H 0 1 N N N -16.225 -13.183 -22.352 -5.135 -1.576 1.147  HE2  VUB 42 
VUB HOH  H20 H 0 1 N N N -18.835 -14.944 -21.025 -5.347 0.609  3.190  HOH  VUB 43 
VUB HXT  H21 H 0 1 N Y N -14.018 -5.917  -17.698 2.787  -2.947 2.552  HXT  VUB 44 
VUB H22  H22 H 0 1 N N N -14.390 -9.927  -20.293 -1.290 -2.719 -0.650 H22  VUB 45 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VUB CD2 CG2  DOUB Y N 1  
VUB CD2 CE2  SING Y N 2  
VUB CB2 CG2  SING N N 3  
VUB CB2 CA2  SING N N 4  
VUB CB1 CA1  SING N N 5  
VUB CB1 CG1  SING N N 6  
VUB CG2 CD1  SING Y N 7  
VUB CD4 CG1  SING N N 8  
VUB CE2 CZ   DOUB Y N 9  
VUB N2  CA2  SING Y N 10 
VUB N2  C1   DOUB Y N 11 
VUB CA2 C2   DOUB Y N 12 
VUB CD1 CE1  DOUB Y N 13 
VUB CA1 N    DOUB N N 14 
VUB CA1 C1   SING N N 15 
VUB CZ  CE1  SING Y N 16 
VUB CZ  OH   SING N N 17 
VUB C1  N3   SING Y N 18 
VUB CG1 CD3  SING N N 19 
VUB C2  N3   SING Y N 20 
VUB C2  O2   SING N N 21 
VUB N3  CA3  SING N N 22 
VUB CA3 C    SING N N 23 
VUB C   O    DOUB N N 24 
VUB C   OXT  SING N N 25 
VUB CA3 HA3  SING N N 26 
VUB CA3 HA3A SING N N 27 
VUB CB1 HB1  SING N N 28 
VUB CB1 HB1A SING N N 29 
VUB CG1 HG1  SING N N 30 
VUB CD4 HD4  SING N N 31 
VUB CD4 HD4A SING N N 32 
VUB CD4 HD4B SING N N 33 
VUB CD3 HD3  SING N N 34 
VUB CD3 HD3A SING N N 35 
VUB CD3 HD3B SING N N 36 
VUB N   HN   SING N N 37 
VUB CB2 HB2  SING N N 38 
VUB CB2 H15  SING N N 39 
VUB CD1 HD1  SING N N 40 
VUB CE1 HE1  SING N N 41 
VUB CD2 HD2  SING N N 42 
VUB CE2 HE2  SING N N 43 
VUB OH  HOH  SING N N 44 
VUB OXT HXT  SING N N 45 
VUB O2  H22  SING N N 46 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VUB InChI            InChI                1.06  "InChI=1S/C17H21N3O4/c1-10(2)7-13(18)16-19-14(17(24)20(16)9-15(22)23)8-11-3-5-12(21)6-4-11/h3-6,10,18,21,24H,7-9H2,1-2H3,(H,22,23)/b18-13-" 
VUB InChIKey         InChI                1.06  OCWUNMVDAKROFH-AQTBWJFISA-N                                                                                                                 
VUB SMILES_CANONICAL CACTVS               3.385 "CC(C)CC(=N)c1nc(Cc2ccc(O)cc2)c(O)n1CC(O)=O"                                                                                                
VUB SMILES           CACTVS               3.385 "CC(C)CC(=N)c1nc(Cc2ccc(O)cc2)c(O)n1CC(O)=O"                                                                                                
VUB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(/CC(C)C)\c1nc(c(n1CC(=O)O)O)Cc2ccc(cc2)O"                                                                                          
VUB SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)CC(=N)c1nc(c(n1CC(=O)O)O)Cc2ccc(cc2)O"                                                                                                
# 
_pdbx_chem_comp_identifier.comp_id           VUB 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "2-[4-[(4-hydroxyphenyl)methyl]-2-(3-methylbutanimidoyl)-5-oxidanyl-imidazol-1-yl]ethanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VUB "Create component" 2023-04-05 PDBE 
VUB "Initial release"  2023-04-12 RCSB 
# 
