data_XYF
#

_chem_comp.id                                   XYF
_chem_comp.name                                 "5(R)-fluoro-beta-D-xylopyranose"
_chem_comp.type                                 "D-saccharide, beta linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C5 H8 F O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "5(R)-fluoro-beta-D-xylose; 5(R)-fluoro-D-xylose; 5(R)-fluoro-xylose"
_chem_comp.pdbx_formal_charge                   -1
_chem_comp.pdbx_initial_date                    2004-10-23
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       167.112
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    XYF
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1XSK
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  XYF  "5(R)-fluoro-beta-D-xylose"  PDB  ?  
2  XYF  "5(R)-fluoro-D-xylose"       PDB  ?  
3  XYF  "5(R)-fluoro-xylose"         PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XYF  O3   O3   O   0  1  N  N  N  108.031  62.571  109.673   1.766  -1.663  -0.734  O3   XYF   1  
XYF  C3   C3   C   0  1  N  N  R  109.296  63.237  109.630   2.105  -0.356  -0.266  C3   XYF   2  
XYF  C2   C4   C   0  1  N  N  S  110.268  62.521  108.690   2.403   0.542  -1.462  C2   XYF   3  
XYF  O2   O4   O   0  1  N  N  N  110.393  61.156  109.099   3.644   0.137  -2.034  O2   XYF   4  
XYF  C1   C5   C   0  1  N  N  R  111.634  63.213  108.757   2.501   1.995  -1.033  C1   XYF   5  
XYF  F5   F5   F   0  1  N  N  N  112.340  62.924  107.642   2.586   2.767  -2.153  F5   XYF   6  
XYF  O5   O5   O   0  1  N  N  N  111.530  64.642  108.913   1.327   2.406  -0.345  O5   XYF   7  
XYF  C5   C1   C   0  1  N  N  S  110.308  65.202  108.399   1.112   1.689   0.884  C5   XYF   8  
XYF  C4   C2   C   0  1  N  N  R  109.114  64.701  109.218   0.929   0.183   0.559  C4   XYF   9  
XYF  O4   O2   O   0  1  N  N  N  108.962  65.478  110.409   0.847  -0.580   1.767  O4   XYF  10  
XYF  O1   O1   O  -1  1  N  Y  N        ?       ?        ?  -0.020   2.135   1.401  O1   XYF  11  
XYF  HO3  HO3  H   0  1  N  Y  N  107.428  63.016  110.257   2.463  -1.919  -1.356  HO3  XYF  12  
XYF  H3   H3   H   0  1  N  N  N  109.737  63.210  110.654   2.995  -0.478   0.362  H3   XYF  13  
XYF  H2   H4   H   0  1  N  N  N  109.887  62.560  107.643   1.636   0.420  -2.235  H2   XYF  14  
XYF  HO2  HO4  H   0  1  N  Y  N  110.997  60.711  108.515   3.669  -0.831  -1.983  HO2  XYF  15  
XYF  H1   H5   H   0  1  N  N  N  112.158  62.825  109.662   3.395   2.200  -0.434  H1   XYF  16  
XYF  H51  H1   H   0  1  N  N  N  110.822  66.168  108.184   2.036   1.785   1.473  H51  XYF  17  
XYF  H4   H2   H   0  1  N  N  N  108.211  64.799  108.571  -0.001   0.001   0.001  H4   XYF  18  
XYF  HO4  HO2  H   0  1  N  N  N  108.849  66.386  110.154   0.346  -0.039   2.395  HO4  XYF  19  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XYF  O3  C3   SING  N  N   1  
XYF  O3  HO3  SING  N  N   2  
XYF  C3  C2   SING  N  N   3  
XYF  C3  C4   SING  N  N   4  
XYF  C3  H3   SING  N  N   5  
XYF  C2  O2   SING  N  N   6  
XYF  C2  C1   SING  N  N   7  
XYF  C2  H2   SING  N  N   8  
XYF  O2  HO2  SING  N  N   9  
XYF  C1  F5   SING  N  N  10  
XYF  C1  O5   SING  N  N  11  
XYF  C1  H1   SING  N  N  12  
XYF  O5  C5   SING  N  N  13  
XYF  C5  C4   SING  N  N  14  
XYF  C5  O1   SING  N  N  15  
XYF  C5  H51  SING  N  N  16  
XYF  C4  O4   SING  N  N  17  
XYF  C4  H4   SING  N  N  18  
XYF  O4  HO4  SING  N  N  19  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XYF  SMILES            ACDLabs               10.04  "[O-]C1OC(F)C(O)C(O)C1O"  
XYF  SMILES_CANONICAL  CACTVS                3.341  "O[C@H]1[C@H]([O-])O[C@H](F)[C@@H](O)[C@@H]1O"  
XYF  SMILES            CACTVS                3.341  "O[CH]1[CH]([O-])O[CH](F)[CH](O)[CH]1O"  
XYF  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "[C@H]1([C@H]([C@@H](O[C@@H]([C@H]1O)F)[O-])O)O"  
XYF  SMILES            "OpenEye OEToolkits"  1.5.0  "C1(C(C(OC(C1O)F)[O-])O)O"  
XYF  InChI             InChI                 1.03   "InChI=1S/C5H8FO5/c6-4-2(8)1(7)3(9)5(10)11-4/h1-5,7-9H/q-1/t1-,2-,3+,4-,5?/m0/s1"  
XYF  InChIKey          InChI                 1.03   CSWSGZBYLQUXQI-ZAMRNKCBSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
XYF  "SYSTEMATIC NAME"  ACDLabs               10.04  "(2R,3R,4R,5S,6R)-6-fluoro-3,4,5-trihydroxytetrahydro-2H-pyran-2-olate (non-preferred name)"  
XYF  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(2R,3R,4R,5S,6R)-6-fluoro-3,4,5-trihydroxy-oxan-2-olate"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
XYF  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
XYF  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
XYF  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
XYF  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XYF  "Create component"          2004-10-23  RCSB  
XYF  "Modify descriptor"         2011-06-04  RCSB  
XYF  "Other modification"        2020-07-03  RCSB  
XYF  "Modify name"               2020-07-17  RCSB  
XYF  "Modify synonyms"           2020-07-17  RCSB  
XYF  "Modify internal type"      2020-07-17  RCSB  
XYF  "Modify linking type"       2020-07-17  RCSB  
XYF  "Modify atom id"            2020-07-17  RCSB  
XYF  "Modify component atom id"  2020-07-17  RCSB  
XYF  "Modify leaving atom flag"  2020-07-17  RCSB  
##
