data_XYP
#

_chem_comp.id                                   XYP
_chem_comp.name                                 beta-D-xylopyranose
_chem_comp.type                                 "D-saccharide, beta linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C5 H10 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "beta-D-xylose; D-xylose; xylose"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-07-08
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       150.130
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    XYP
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1QH7
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  XYP  beta-D-xylose  PDB  ?  
2  XYP  D-xylose       PDB  ?  
3  XYP  xylose         PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XYP  O1   O4A   O  0  1  N  Y  N  25.473  67.456  19.833   0.501  -0.130  -2.746  O1   XYP   1  
XYP  C1   C1B   C  0  1  N  N  R  26.238  67.853  20.951   0.509   0.253  -1.370  C1   XYP   2  
XYP  C2   C2B   C  0  1  N  N  R  27.692  68.019  20.449  -0.780  -0.228  -0.701  C2   XYP   3  
XYP  C3   C3B   C  0  1  N  N  S  28.484  68.399  21.697  -0.779   0.213   0.766  C3   XYP   4  
XYP  C4   C4B   C  0  1  N  N  R  28.013  69.789  22.196   0.519  -0.269   1.423  C4   XYP   5  
XYP  C5   C5B   C  0  1  N  N  N  26.475  69.804  22.292   1.710   0.215   0.593  C5   XYP   6  
XYP  O2   O2B   O  0  1  N  N  N  28.167  66.806  19.914  -1.907   0.337  -1.372  O2   XYP   7  
XYP  O3   O3B   O  0  1  N  N  N  29.848  68.362  21.410  -1.904  -0.354   1.439  O3   XYP   8  
XYP  O4   O4B   O  0  1  N  N  N  28.532  69.789  23.537   0.611   0.260   2.747  O4   XYP   9  
XYP  O5   O5B   O  0  1  N  N  N  25.837  69.190  21.204   1.637  -0.331  -0.721  O5   XYP  10  
XYP  HO1  HO4A  H  0  1  N  Y  N  24.580  67.354  20.141   1.325   0.194  -3.132  HO1  XYP  11  
XYP  H1   H1B   H  0  1  N  N  N  26.132  67.149  21.809   0.571   1.338  -1.297  H1   XYP  12  
XYP  H2   H2B   H  0  1  N  N  N  27.780  68.782  19.640  -0.833  -1.316  -0.752  H2   XYP  13  
XYP  H3   H3B   H  0  1  N  N  N  28.301  67.669  22.520  -0.831   1.301   0.820  H3   XYP  14  
XYP  H4   H4B   H  0  1  N  N  N  28.332  70.640  21.550   0.523  -1.358   1.465  H4   XYP  15  
XYP  H51  H5B1  H  0  1  N  N  N  26.136  69.352  23.253   1.692   1.303   0.535  H51  XYP  16  
XYP  H52  H5B2  H  0  1  N  N  N  26.099  70.844  22.432   2.637  -0.105   1.068  H52  XYP  17  
XYP  HO2  HO2B  H  0  1  N  Y  N  29.059  66.907  19.605  -1.865   0.037  -2.291  HO2  XYP  18  
XYP  HO3  HO3B  H  0  1  N  Y  N  30.341  68.598  22.186  -1.864  -0.051   2.356  HO3  XYP  19  
XYP  HO4  HO4B  H  0  1  N  Y  N  28.243  70.640  23.842   1.441  -0.064   3.121  HO4  XYP  20  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XYP  O1  C1   SING  N  N   1  
XYP  O1  HO1  SING  N  N   2  
XYP  C1  C2   SING  N  N   3  
XYP  C1  O5   SING  N  N   4  
XYP  C1  H1   SING  N  N   5  
XYP  C2  C3   SING  N  N   6  
XYP  C2  O2   SING  N  N   7  
XYP  C2  H2   SING  N  N   8  
XYP  C3  C4   SING  N  N   9  
XYP  C3  O3   SING  N  N  10  
XYP  C3  H3   SING  N  N  11  
XYP  C4  C5   SING  N  N  12  
XYP  C4  O4   SING  N  N  13  
XYP  C4  H4   SING  N  N  14  
XYP  C5  O5   SING  N  N  15  
XYP  C5  H51  SING  N  N  16  
XYP  C5  H52  SING  N  N  17  
XYP  O2  HO2  SING  N  N  18  
XYP  O3  HO3  SING  N  N  19  
XYP  O4  HO4  SING  N  N  20  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XYP  SMILES            ACDLabs               10.04  "OC1C(O)COC(O)C1O"  
XYP  SMILES_CANONICAL  CACTVS                3.341  "O[C@@H]1CO[C@@H](O)[C@H](O)[C@H]1O"  
XYP  SMILES            CACTVS                3.341  "O[CH]1CO[CH](O)[CH](O)[CH]1O"  
XYP  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C1[C@H]([C@@H]([C@H]([C@@H](O1)O)O)O)O"  
XYP  SMILES            "OpenEye OEToolkits"  1.5.0  "C1C(C(C(C(O1)O)O)O)O"  
XYP  InChI             InChI                 1.03   "InChI=1S/C5H10O5/c6-2-1-10-5(9)4(8)3(2)7/h2-9H,1H2/t2-,3+,4-,5-/m1/s1"  
XYP  InChIKey          InChI                 1.03   SRBFZHDQGSBBOR-KKQCNMDGSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
XYP  "SYSTEMATIC NAME"                      ACDLabs               10.04  beta-D-xylopyranose  
XYP  "SYSTEMATIC NAME"                      "OpenEye OEToolkits"  1.5.0  "(2R,3R,4S,5R)-oxane-2,3,4,5-tetrol"  
XYP  "CONDENSED IUPAC CARBOHYDRATE SYMBOL"  GMML                  1.0    DXylpb  
XYP  "COMMON NAME"                          GMML                  1.0    b-D-xylopyranose  
XYP  "IUPAC CARBOHYDRATE SYMBOL"            PDB-CARE              1.0    b-D-Xylp  
XYP  "SNFG CARBOHYDRATE SYMBOL"             GMML                  1.0    Xyl  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
XYP  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
XYP  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
XYP  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
XYP  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XYP  "Create component"          1999-07-08  RCSB  
XYP  "Modify descriptor"         2011-06-04  RCSB  
XYP  "Other modification"        2019-08-12  RCSB  
XYP  "Other modification"        2019-12-19  RCSB  
XYP  "Other modification"        2020-07-03  RCSB  
XYP  "Modify name"               2020-07-17  RCSB  
XYP  "Modify synonyms"           2020-07-17  RCSB  
XYP  "Modify atom id"            2020-07-17  RCSB  
XYP  "Modify component atom id"  2020-07-17  RCSB  
##
