data_Y37
#

_chem_comp.id                                   Y37
_chem_comp.name                                 "(1R,4R)-4-fluoro-3-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]cyclopent-2-ene-1-carboxylic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C14 H18 F N2 O7 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-02-01
_chem_comp.pdbx_modified_date                   2022-02-11
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       376.274
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    Y37
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7LK1
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Y37  C20  C1   C  0  1  N  N  N  -4.568  -20.547  -32.899   4.545  -1.002  -1.322  C20  Y37   1  
Y37  C21  C2   C  0  1  N  N  R  -5.073  -21.055  -31.511   4.263  -1.315   0.166  C21  Y37   2  
Y37  C19  C3   C  0  1  N  N  N  -3.938  -21.027  -30.517   3.007  -0.539   0.491  C19  Y37   3  
Y37  C18  C4   C  0  1  N  N  R  -3.097  -20.108  -32.648   3.134  -0.636  -1.835  C18  Y37   4  
Y37  C17  C5   C  0  1  N  N  N  -2.758  -20.490  -31.231   2.387  -0.167  -0.608  C17  Y37   5  
Y37  C01  C6   C  0  1  N  N  N  -1.667  -19.151  -29.374   0.563   0.965   0.618  C01  Y37   6  
Y37  C02  C7   C  0  1  Y  N  N  -1.057  -19.962  -28.243  -0.695   1.737   0.312  C02  Y37   7  
Y37  C03  C8   C  0  1  Y  N  N   0.321  -19.987  -28.066  -1.912   1.086   0.176  C03  Y37   8  
Y37  C04  C9   C  0  1  N  N  N   1.289  -19.235  -28.986  -1.997  -0.410   0.333  C04  Y37   9  
Y37  C05  C10  C  0  1  Y  N  N   0.811  -20.735  -27.015  -3.045   1.826  -0.103  C05  Y37  10  
Y37  C07  C11  C  0  1  Y  N  N  -1.301  -21.396  -26.367  -1.845   3.793  -0.115  C07  Y37  11  
Y37  C08  C12  C  0  1  N  N  N  -2.197  -22.186  -25.413  -1.828   5.291  -0.283  C08  Y37  12  
Y37  C09  C13  C  0  1  Y  N  N  -1.885  -20.672  -27.387  -0.665   3.119   0.165  C09  Y37  13  
Y37  C33  C14  C  0  1  N  N  N  -6.033  -22.229  -31.450   5.407  -0.846   1.027  C33  Y37  14  
Y37  F22  F1   F  0  1  N  N  N  -2.628  -18.933  -33.160   2.509  -1.761  -2.385  F22  Y37  15  
Y37  N06  N1   N  0  1  Y  N  N   0.009  -21.411  -26.215  -2.981   3.136  -0.242  N06  Y37  16  
Y37  N11  N2   N  0  1  N  N  N  -1.590  -19.971  -30.563   1.204   0.561  -0.636  N11  Y37  17  
Y37  O10  O1   O  0  1  N  N  N  -3.276  -20.664  -27.545   0.503   3.801   0.295  O10  Y37  18  
Y37  O13  O2   O  0  1  N  N  N   2.952  -17.316  -30.599  -3.125  -3.212  -0.947  O13  Y37  19  
Y37  O14  O3   O  0  1  N  N  N   1.039  -17.859  -28.973  -3.350  -0.831   0.147  O14  Y37  20  
Y37  O15  O4   O  0  1  N  N  N   1.357  -15.524  -29.980  -5.412  -2.463   0.113  O15  Y37  21  
Y37  O16  O5   O  0  1  N  N  N   0.637  -17.369  -31.468  -3.389  -2.931   1.548  O16  Y37  22  
Y37  O34  O6   O  0  1  N  N  N  -6.375  -22.685  -30.328   5.362  -1.022   2.357  O34  Y37  23  
Y37  O35  O7   O  0  1  N  N  N  -6.471  -22.721  -32.523   6.365  -0.311   0.521  O35  Y37  24  
Y37  P12  P1   P  0  1  N  N  N   1.507  -16.992  -30.293  -3.810  -2.372   0.244  P12  Y37  25  
Y37  H1   H1   H  0  1  N  N  N  -5.173  -19.696  -33.244   5.228  -0.157  -1.421  H1   Y37  26  
Y37  H2   H2   H  0  1  N  N  N  -4.610  -21.353  -33.646   4.934  -1.879  -1.839  H2   Y37  27  
Y37  H3   H3   H  0  1  N  N  N  -5.703  -20.218  -31.176   4.098  -2.383   0.304  H3   Y37  28  
Y37  H4   H4   H  0  1  N  N  N  -3.979  -21.339  -29.484   2.665  -0.321   1.492  H4   Y37  29  
Y37  H5   H5   H  0  1  N  N  N  -2.544  -20.866  -33.222   3.193   0.164  -2.572  H5   Y37  30  
Y37  H6   H6   H  0  1  N  N  N  -1.102  -18.219  -29.519   1.245   1.595   1.188  H6   Y37  31  
Y37  H7   H7   H  0  1  N  N  N  -2.716  -18.912  -29.146   0.313   0.079   1.201  H7   Y37  32  
Y37  H8   H8   H  0  1  N  N  N   1.171  -19.611  -30.013  -1.362  -0.890  -0.412  H8   Y37  33  
Y37  H9   H9   H  0  1  N  N  N   2.319  -19.415  -28.645  -1.663  -0.691   1.331  H9   Y37  34  
Y37  H10  H10  H  0  1  N  N  N   1.877  -20.768  -26.843  -3.995   1.325  -0.211  H10  Y37  35  
Y37  H11  H11  H  0  1  N  N  N  -1.574  -22.702  -24.668  -2.001   5.766   0.683  H11  Y37  36  
Y37  H12  H12  H  0  1  N  N  N  -2.885  -21.497  -24.902  -0.858   5.601  -0.672  H12  Y37  37  
Y37  H13  H13  H  0  1  N  N  N  -2.776  -22.927  -25.983  -2.611   5.588  -0.980  H13  Y37  38  
Y37  H14  H14  H  0  1  N  N  N  -1.037  -20.767  -30.315   0.802   0.801  -1.486  H14  Y37  39  
Y37  H15  H15  H  0  1  N  N  N  -3.675  -21.202  -26.872   0.993   3.903  -0.533  H15  Y37  40  
Y37  H16  H16  H  0  1  N  N  N   3.015  -17.691  -31.470  -3.358  -2.900  -1.832  H16  Y37  41  
Y37  H17  H17  H  0  1  N  N  N   0.742  -15.131  -30.589  -5.760  -3.363   0.162  H17  Y37  42  
Y37  H18  H18  H  0  1  N  N  N  -6.976  -23.410  -30.450   6.119  -0.705   2.868  H18  Y37  43  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Y37  F22  C18  SING  N  N   1  
Y37  C20  C18  SING  N  N   2  
Y37  C20  C21  SING  N  N   3  
Y37  C18  C17  SING  N  N   4  
Y37  O35  C33  DOUB  N  N   5  
Y37  C21  C33  SING  N  N   6  
Y37  C21  C19  SING  N  N   7  
Y37  O16  P12  DOUB  N  N   8  
Y37  C33  O34  SING  N  N   9  
Y37  C17  N11  SING  N  N  10  
Y37  C17  C19  DOUB  N  N  11  
Y37  O13  P12  SING  N  N  12  
Y37  N11  C01  SING  N  N  13  
Y37  P12  O15  SING  N  N  14  
Y37  P12  O14  SING  N  N  15  
Y37  C01  C02  SING  N  N  16  
Y37  C04  O14  SING  N  N  17  
Y37  C04  C03  SING  N  N  18  
Y37  C02  C03  SING  Y  N  19  
Y37  C02  C09  DOUB  Y  N  20  
Y37  C03  C05  DOUB  Y  N  21  
Y37  O10  C09  SING  N  N  22  
Y37  C09  C07  SING  Y  N  23  
Y37  C05  N06  SING  Y  N  24  
Y37  C07  N06  DOUB  Y  N  25  
Y37  C07  C08  SING  N  N  26  
Y37  C20  H1   SING  N  N  27  
Y37  C20  H2   SING  N  N  28  
Y37  C21  H3   SING  N  N  29  
Y37  C19  H4   SING  N  N  30  
Y37  C18  H5   SING  N  N  31  
Y37  C01  H6   SING  N  N  32  
Y37  C01  H7   SING  N  N  33  
Y37  C04  H8   SING  N  N  34  
Y37  C04  H9   SING  N  N  35  
Y37  C05  H10  SING  N  N  36  
Y37  C08  H11  SING  N  N  37  
Y37  C08  H12  SING  N  N  38  
Y37  C08  H13  SING  N  N  39  
Y37  N11  H14  SING  N  N  40  
Y37  O10  H15  SING  N  N  41  
Y37  O13  H16  SING  N  N  42  
Y37  O15  H17  SING  N  N  43  
Y37  O34  H18  SING  N  N  44  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Y37  SMILES            ACDLabs               12.01  "C1C(C(=CC1C(O)=O)NCc2c(cnc(C)c2O)COP(O)(O)=O)F"  
Y37  InChI             InChI                 1.03   "InChI=1S/C14H18FN2O7P/c1-7-13(18)10(9(4-16-7)6-24-25(21,22)23)5-17-12-3-8(14(19)20)2-11(12)15/h3-4,8,11,17-18H,2,5-6H2,1H3,(H,19,20)(H2,21,22,23)/t8-,11-/m1/s1"  
Y37  InChIKey          InChI                 1.03   YUSFTNIOKSVGAN-LDYMZIIASA-N  
Y37  SMILES_CANONICAL  CACTVS                3.385  "Cc1ncc(CO[P](O)(O)=O)c(CNC2=C[C@@H](C[C@H]2F)C(O)=O)c1O"  
Y37  SMILES            CACTVS                3.385  "Cc1ncc(CO[P](O)(O)=O)c(CNC2=C[CH](C[CH]2F)C(O)=O)c1O"  
Y37  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "Cc1c(c(c(cn1)COP(=O)(O)O)CNC2=C[C@@H](C[C@H]2F)C(=O)O)O"  
Y37  SMILES            "OpenEye OEToolkits"  2.0.7  "Cc1c(c(c(cn1)COP(=O)(O)O)CNC2=CC(CC2F)C(=O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
Y37  "SYSTEMATIC NAME"  ACDLabs               12.01  "(1R,4R)-4-fluoro-3-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]cyclopent-2-ene-1-carboxylic acid"  
Y37  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(1~{R},4~{R})-4-fluoranyl-3-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]cyclopent-2-ene-1-carboxylic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Y37  "Create component"  2021-02-01  RCSB  
Y37  "Initial release"   2022-02-16  RCSB  
##
