data_Y4J
#

_chem_comp.id                                   Y4J
_chem_comp.name                                 "(1R,2S)-2-((S)-2-(((((1R,3R,5S)-bicyclo[3.3.1]non-6-en-3-yl)methoxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C24 H39 N3 O8 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-02-03
_chem_comp.pdbx_modified_date                   2021-02-12
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       529.647
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    Y4J
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7LKV
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Y4J  N11  N1   N  0  1  N  N  N  10.147  20.344  27.463   2.352  -0.223  -0.222  N11  Y4J   1  
Y4J  C12  C1   C  0  1  N  N  N  10.565  21.616  27.891   1.204   0.409   0.094  C12  Y4J   2  
Y4J  C14  C2   C  0  1  N  N  N  13.041  21.945  28.388   0.037   0.197  -2.083  C14  Y4J   3  
Y4J  N18  N2   N  0  1  N  N  N  11.795  23.597  27.032  -1.179   0.836  -0.061  N18  Y4J   4  
Y4J  C19  C3   C  0  1  N  N  N  10.829  24.022  26.140  -2.446   0.377  -0.092  C19  Y4J   5  
Y4J  C21  C4   C  0  1  N  N  N   9.337  25.767  25.420  -4.790   0.582   0.311  C21  Y4J   6  
Y4J  C22  C5   C  0  1  N  N  R   8.150  26.233  26.327  -5.790   1.587   0.885  C22  Y4J   7  
Y4J  C23  C6   C  0  1  N  N  N   6.846  26.530  25.515  -6.397   1.025   2.170  C23  Y4J   8  
Y4J  C24  C7   C  0  1  N  N  R   6.728  27.911  24.867  -7.185  -0.245   1.892  C24  Y4J   9  
Y4J  C25  C8   C  0  1  N  N  N   6.872  29.009  25.908  -8.260  -0.003   0.832  C25  Y4J  10  
Y4J  C26  C9   C  0  1  N  N  S   8.250  28.866  26.541  -7.575   0.491  -0.449  C26  Y4J  11  
Y4J  C27  C10  C  0  1  N  N  N   8.466  27.481  27.183  -6.904   1.839  -0.137  C27  Y4J  12  
Y4J  C02  C11  C  0  1  N  N  N   6.587  20.988  24.876   2.934  -2.648   0.825  C02  Y4J  13  
Y4J  C04  C12  C  0  1  N  N  N   5.649  22.709  26.262   4.640  -4.120   0.262  C04  Y4J  14  
Y4J  C05  C13  C  0  1  N  N  N   6.671  21.924  27.106   5.249  -3.144   1.293  C05  Y4J  15  
Y4J  C06  C14  C  0  1  N  N  S   7.476  21.053  26.125   4.217  -1.993   1.286  C06  Y4J  16  
Y4J  C07  C15  C  0  1  N  N  N   7.827  19.691  26.722   4.643  -0.899   0.306  C07  Y4J  17  
Y4J  C08  C16  C  0  1  N  N  S   8.854  19.771  27.914   3.623   0.242   0.340  C08  Y4J  18  
Y4J  C09  C17  C  0  1  N  N  R   9.113  18.360  28.456   4.146   1.418  -0.487  C09  Y4J  19  
Y4J  C13  C18  C  0  1  N  N  S  11.927  22.175  27.359  -0.086   0.005  -0.571  C13  Y4J  20  
Y4J  C15  C19  C  0  1  N  N  N  14.402  22.478  27.971  -1.225  -0.330  -2.769  C15  Y4J  21  
Y4J  C16  C20  C  0  1  N  N  N  15.457  22.174  29.035  -1.156  -0.026  -4.267  C16  Y4J  22  
Y4J  C17  C21  C  0  1  N  N  N  14.884  21.906  26.662  -1.326  -1.842  -2.560  C17  Y4J  23  
Y4J  C28  C22  C  0  1  N  N  N   9.239  29.133  25.447  -6.492  -0.481  -0.836  C28  Y4J  24  
Y4J  C29  C23  C  0  1  N  N  N   8.938  28.903  24.177  -5.927  -1.287   0.004  C29  Y4J  25  
Y4J  C30  C24  C  0  1  N  N  N   7.761  28.098  23.739  -6.280  -1.390   1.457  C30  Y4J  26  
Y4J  N03  N3   N  0  1  N  N  N   5.576  21.946  25.029   3.200  -3.839   0.261  N03  Y4J  27  
Y4J  O01  O1   O  0  1  N  N  N   6.694  20.269  23.922   1.826  -2.170   0.951  O01  Y4J  28  
Y4J  O10  O2   O  0  1  N  N  N   9.942  18.545  29.585   4.495   0.963  -1.795  O10  Y4J  29  
Y4J  O20  O3   O  0  1  N  N  N  10.563  25.395  26.053  -3.451   1.140   0.377  O20  Y4J  30  
Y4J  O31  O4   O  0  1  N  N  N  10.193  23.247  25.448  -2.681  -0.727  -0.544  O31  Y4J  31  
Y4J  O32  O5   O  0  1  N  N  N   9.867  22.283  28.610   1.210   1.303   0.913  O32  Y4J  32  
Y4J  H1   H1   H  0  1  N  N  N  10.730  19.817  26.845   2.336  -0.988  -0.818  H1   Y4J  33  
Y4J  H2   H2   H  0  1  N  N  N  12.750  22.441  29.326   0.157   1.257  -2.307  H2   Y4J  34  
Y4J  H3   H3   H  0  1  N  N  N  13.133  20.862  28.559   0.905  -0.352  -2.450  H3   Y4J  35  
Y4J  H4   H4   H  0  1  N  N  N  12.407  24.264  27.457  -0.992   1.717   0.300  H4   Y4J  36  
Y4J  H5   H5   H  0  1  N  N  N   9.564  26.593  24.729  -4.827  -0.340   0.891  H5   Y4J  37  
Y4J  H6   H6   H  0  1  N  N  N   8.988  24.895  24.847  -5.044   0.368  -0.727  H6   Y4J  38  
Y4J  H7   H7   H  0  1  N  N  N   7.923  25.407  27.018  -5.279   2.524   1.104  H7   Y4J  39  
Y4J  H8   H8   H  0  1  N  N  N   5.994  26.412  26.201  -5.596   0.802   2.876  H8   Y4J  40  
Y4J  H9   H9   H  0  1  N  N  N   6.777  25.781  24.713  -7.062   1.769   2.608  H9   Y4J  41  
Y4J  H10  H10  H  0  1  N  N  N   5.725  27.992  24.422  -7.680  -0.548   2.815  H10  Y4J  42  
Y4J  H11  H11  H  0  1  N  N  N   6.780  29.995  25.429  -8.792  -0.933   0.628  H11  Y4J  43  
Y4J  H12  H12  H  0  1  N  N  N   6.093  28.901  26.677  -8.962   0.751   1.187  H12  Y4J  44  
Y4J  H13  H13  H  0  1  N  N  N   8.362  29.633  27.321  -8.304   0.603  -1.252  H13  Y4J  45  
Y4J  H14  H14  H  0  1  N  N  N   7.832  27.433  28.080  -7.638   2.529   0.280  H14  Y4J  46  
Y4J  H15  H15  H  0  1  N  N  N   9.524  27.417  27.478  -6.479   2.259  -1.049  H15  Y4J  47  
Y4J  H16  H16  H  0  1  N  N  N   6.000  23.734  26.071   5.061  -3.935  -0.726  H16  Y4J  48  
Y4J  H17  H17  H  0  1  N  N  N   4.670  22.744  26.762   4.824  -5.151   0.564  H17  Y4J  49  
Y4J  H18  H18  H  0  1  N  N  N   6.151  21.289  27.838   5.311  -3.607   2.279  H18  Y4J  50  
Y4J  H19  H19  H  0  1  N  N  N   7.341  22.619  27.634   6.228  -2.793   0.967  H19  Y4J  51  
Y4J  H20  H20  H  0  1  N  N  N   8.407  21.579  25.869   4.096  -1.580   2.288  H20  Y4J  52  
Y4J  H21  H21  H  0  1  N  N  N   6.902  19.224  27.091   5.623  -0.517   0.590  H21  Y4J  53  
Y4J  H22  H22  H  0  1  N  N  N   8.263  19.065  25.929   4.692  -1.312  -0.702  H22  Y4J  54  
Y4J  H23  H23  H  0  1  N  N  N   8.424  20.394  28.712   3.469   0.561   1.370  H23  Y4J  55  
Y4J  H44  H44  H  0  1  N  N  N   8.145  17.958  28.791   3.371   2.182  -0.562  H44  Y4J  56  
Y4J  S1   S1   S  0  1  N  Y  N   9.622  17.744  27.700   5.610   2.121   0.321  S1   Y4J  57  
Y4J  H26  H26  H  0  1  N  N  N  12.184  21.619  26.445  -0.294  -1.043  -0.353  H26  Y4J  58  
Y4J  H27  H27  H  0  1  N  N  N  14.327  23.570  27.866  -2.101   0.156  -2.339  H27  Y4J  59  
Y4J  H28  H28  H  0  1  N  N  N  15.130  22.581  30.003  -0.280  -0.511  -4.697  H28  Y4J  60  
Y4J  H29  H29  H  0  1  N  N  N  15.588  21.085  29.121  -2.056  -0.401  -4.755  H29  Y4J  61  
Y4J  H30  H30  H  0  1  N  N  N  16.412  22.637  28.747  -1.084   1.052  -4.416  H30  Y4J  62  
Y4J  H31  H31  H  0  1  N  N  N  15.869  22.329  26.417  -1.375  -2.059  -1.493  H31  Y4J  63  
Y4J  H32  H32  H  0  1  N  N  N  14.966  20.812  26.748  -2.226  -2.217  -3.048  H32  Y4J  64  
Y4J  H33  H33  H  0  1  N  N  N  14.168  22.159  25.866  -0.450  -2.328  -2.990  H33  Y4J  65  
Y4J  H34  H34  H  0  1  N  N  N  10.215  29.520  25.698  -6.170  -0.507  -1.866  H34  Y4J  66  
Y4J  H35  H35  H  0  1  N  N  N   9.581  29.322  23.417  -5.146  -1.932  -0.369  H35  Y4J  67  
Y4J  H36  H36  H  0  1  N  N  N   7.275  28.611  22.896  -5.365  -1.365   2.049  H36  Y4J  68  
Y4J  H37  H37  H  0  1  N  N  N   8.111  27.108  23.413  -6.792  -2.336   1.633  H37  Y4J  69  
Y4J  H38  H38  H  0  1  N  N  N   4.862  22.092  24.344   2.526  -4.435  -0.101  H38  Y4J  70  
Y4J  H39  H39  H  0  1  N  N  N  10.853  18.509  29.319   3.759   0.575  -2.286  H39  Y4J  71  
Y4J  O2   O6   O  0  1  N  Y  N   9.799  16.737  28.106   5.941   3.378  -0.253  O2   Y4J  72  
Y4J  O3   O7   O  0  1  N  Y  N   8.992  17.671  26.801   5.141   2.463   1.728  O3   Y4J  73  
Y4J  O1   O8   O  0  1  N  Y  N  10.584  18.208  27.437   6.601   1.121   0.515  O1   Y4J  74  
Y4J  H24  H24  H  0  1  N  Y  N   8.782  16.760  26.634   5.826   2.853   2.287  H24  Y4J  75  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Y4J  C30  C29  SING  N  N   1  
Y4J  C30  C24  SING  N  N   2  
Y4J  O01  C02  DOUB  N  N   3  
Y4J  C29  C28  DOUB  N  N   4  
Y4J  C24  C23  SING  N  N   5  
Y4J  C24  C25  SING  N  N   6  
Y4J  C02  N03  SING  N  N   7  
Y4J  C02  C06  SING  N  N   8  
Y4J  N03  C04  SING  N  N   9  
Y4J  C21  O20  SING  N  N  10  
Y4J  C21  C22  SING  N  N  11  
Y4J  C28  C26  SING  N  N  12  
Y4J  O31  C19  DOUB  N  N  13  
Y4J  C23  C22  SING  N  N  14  
Y4J  C25  C26  SING  N  N  15  
Y4J  O20  C19  SING  N  N  16  
Y4J  C06  C07  SING  N  N  17  
Y4J  C06  C05  SING  N  N  18  
Y4J  C19  N18  SING  N  N  19  
Y4J  C04  C05  SING  N  N  20  
Y4J  C22  C27  SING  N  N  21  
Y4J  C26  C27  SING  N  N  22  
Y4J  C17  C15  SING  N  N  23  
Y4J  C07  C08  SING  N  N  24  
Y4J  N18  C13  SING  N  N  25  
Y4J  C13  C12  SING  N  N  26  
Y4J  C13  C14  SING  N  N  27  
Y4J  N11  C12  SING  N  N  28  
Y4J  N11  C08  SING  N  N  29  
Y4J  C12  O32  DOUB  N  N  30  
Y4J  C08  C09  SING  N  N  31  
Y4J  C15  C14  SING  N  N  32  
Y4J  C15  C16  SING  N  N  33  
Y4J  C09  O10  SING  N  N  34  
Y4J  N11  H1   SING  N  N  35  
Y4J  C14  H2   SING  N  N  36  
Y4J  C14  H3   SING  N  N  37  
Y4J  N18  H4   SING  N  N  38  
Y4J  C21  H5   SING  N  N  39  
Y4J  C21  H6   SING  N  N  40  
Y4J  C22  H7   SING  N  N  41  
Y4J  C23  H8   SING  N  N  42  
Y4J  C23  H9   SING  N  N  43  
Y4J  C24  H10  SING  N  N  44  
Y4J  C25  H11  SING  N  N  45  
Y4J  C25  H12  SING  N  N  46  
Y4J  C26  H13  SING  N  N  47  
Y4J  C27  H14  SING  N  N  48  
Y4J  C27  H15  SING  N  N  49  
Y4J  C04  H16  SING  N  N  50  
Y4J  C04  H17  SING  N  N  51  
Y4J  C05  H18  SING  N  N  52  
Y4J  C05  H19  SING  N  N  53  
Y4J  C06  H20  SING  N  N  54  
Y4J  C07  H21  SING  N  N  55  
Y4J  C07  H22  SING  N  N  56  
Y4J  C08  H23  SING  N  N  57  
Y4J  C09  H44  SING  N  N  58  
Y4J  C09  S1   SING  N  N  59  
Y4J  C13  H26  SING  N  N  60  
Y4J  C15  H27  SING  N  N  61  
Y4J  C16  H28  SING  N  N  62  
Y4J  C16  H29  SING  N  N  63  
Y4J  C16  H30  SING  N  N  64  
Y4J  C17  H31  SING  N  N  65  
Y4J  C17  H32  SING  N  N  66  
Y4J  C17  H33  SING  N  N  67  
Y4J  C28  H34  SING  N  N  68  
Y4J  C29  H35  SING  N  N  69  
Y4J  C30  H36  SING  N  N  70  
Y4J  C30  H37  SING  N  N  71  
Y4J  N03  H38  SING  N  N  72  
Y4J  O10  H39  SING  N  N  73  
Y4J  S1   O2   DOUB  N  N  74  
Y4J  S1   O3   SING  N  N  75  
Y4J  S1   O1   DOUB  N  N  76  
Y4J  O3   H24  SING  N  N  77  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Y4J  SMILES            ACDLabs               12.01  "N(C(=O)C(CC(C)C)NC(OCC1CC2CC(C1)CC=C2)=O)C(CC3C(NCC3)=O)C(O)S(=O)(O)=O"  
Y4J  InChI             InChI                 1.03   "InChI=1S/C24H39N3O8S/c1-14(2)8-19(27-24(31)35-13-17-10-15-4-3-5-16(9-15)11-17)22(29)26-20(23(30)36(32,33)34)12-18-6-7-25-21(18)28/h3-4,14-20,23,30H,5-13H2,1-2H3,(H,25,28)(H,26,29)(H,27,31)(H,32,33,34)/t15-,16+,17-,18-,19-,20-,23+/m0/s1"  
Y4J  InChIKey          InChI                 1.03   ZIWRGXZFSGDQST-ZDCSSWJMSA-N  
Y4J  SMILES_CANONICAL  CACTVS                3.385  "CC(C)C[C@H](NC(=O)OC[C@@H]1C[C@@H]2CC=C[C@H](C1)C2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@H](O)[S](O)(=O)=O"  
Y4J  SMILES            CACTVS                3.385  "CC(C)C[CH](NC(=O)OC[CH]1C[CH]2CC=C[CH](C1)C2)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)[S](O)(=O)=O"  
Y4J  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)[C@H](O)S(=O)(=O)O)NC(=O)OC[C@@H]2C[C@@H]3CC=C[C@@H](C3)C2"  
Y4J  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCC2CC3CC=CC(C3)C2"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
Y4J  "SYSTEMATIC NAME"  ACDLabs               12.01  "(1R,2S)-2-{[N-({[(1R,3R,5S)-bicyclo[3.3.1]non-6-en-3-yl]methoxy}carbonyl)-L-leucyl]amino}-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid"  
Y4J  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(1~{R},2~{S})-2-[[(2~{S})-2-[[(1~{R},3~{R},5~{S})-3-bicyclo[3.3.1]non-6-enyl]methoxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Y4J  "Create component"    2021-02-03  RCSB  
Y4J  "Other modification"  2021-02-05  RCSB  
Y4J  "Modify name"         2021-02-09  RCSB  
Y4J  "Initial release"     2021-02-17  RCSB  
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