data_Y4P
#

_chem_comp.id                                   Y4P
_chem_comp.name                                 "(1R,2S)-2-((S)-2-(((((1R,2S,4S)-bicyclo[2.2.1]heptan-2-yl)methoxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C22 H37 N3 O8 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-02-03
_chem_comp.pdbx_modified_date                   2021-02-12
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       503.609
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    Y4P
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7LKS
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Y4P  C11  C1   C  0  1  N  N  S   8.986  19.765  27.710   3.110   0.296  -1.067  C11  Y4P   1  
Y4P  C12  C2   C  0  1  N  N  N   7.984  19.671  26.475   4.167   1.049  -0.257  C12  Y4P   2  
Y4P  C13  C3   C  0  1  N  N  S   7.596  21.032  25.901   3.598   2.396   0.196  C13  Y4P   3  
Y4P  C14  C4   C  0  1  N  N  N   6.615  20.973  24.729   4.622   3.157   1.009  C14  Y4P   4  
Y4P  C16  C5   C  0  1  N  N  N   5.750  22.651  26.161   3.706   4.698  -0.468  C16  Y4P   5  
Y4P  C17  C6   C  0  1  N  N  N   6.869  21.945  26.900   3.329   3.307  -1.025  C17  Y4P   6  
Y4P  C19  C7   C  0  1  N  N  R   9.208  18.357  28.309   3.721  -0.988  -1.633  C19  Y4P   7  
Y4P  C23  C8   C  0  1  N  N  N   9.764  25.809  25.213  -5.101   0.804   0.115  C23  Y4P   8  
Y4P  C02  C9   C  0  1  N  N  N  10.987  24.021  25.981  -2.784   0.233   0.048  C02  Y4P   9  
Y4P  C04  C10  C  0  1  N  N  S  12.073  22.193  27.169  -0.438  -0.412   0.177  C04  Y4P  10  
Y4P  C05  C11  C  0  1  N  N  N  13.182  21.971  28.198  -0.414  -1.840   0.724  C05  Y4P  11  
Y4P  C06  C12  C  0  1  N  N  N  14.560  22.436  27.746   0.727  -1.981   1.734  C06  Y4P  12  
Y4P  C07  C13  C  0  1  N  N  N  15.026  21.666  26.527   0.428  -1.120   2.963  C07  Y4P  13  
Y4P  C08  C14  C  0  1  N  N  N  15.592  22.325  28.902   0.856  -3.445   2.157  C08  Y4P  14  
Y4P  C09  C15  C  0  1  N  N  N  10.718  21.635  27.621   0.748  -0.200  -0.728  C09  Y4P  15  
Y4P  C24  C16  C  0  1  N  N  S  10.022  27.345  25.423  -6.318   0.849  -0.811  C24  Y4P  16  
Y4P  C25  C17  C  0  1  N  N  R   8.805  28.246  25.350  -7.530   1.505  -0.083  C25  Y4P  17  
Y4P  C26  C18  C  0  1  N  N  N   7.983  27.880  24.110  -7.586   0.794   1.303  C26  Y4P  18  
Y4P  C27  C19  C  0  1  N  N  N   8.910  28.122  22.993  -8.053  -0.645   0.986  C27  Y4P  19  
Y4P  C28  C20  C  0  1  N  N  S  10.089  28.867  23.614  -8.236  -0.668  -0.562  C28  Y4P  20  
Y4P  C29  C21  C  0  1  N  N  N   9.483  29.543  24.856  -8.726   0.817  -0.833  C29  Y4P  21  
Y4P  C30  C22  C  0  1  N  N  N  10.961  27.826  24.318  -6.790  -0.584  -1.149  C30  Y4P  22  
Y4P  N03  N1   N  0  1  N  N  N  11.930  23.610  26.860  -1.674  -0.200  -0.581  N03  Y4P  23  
Y4P  N10  N2   N  0  1  N  N  N  10.292  20.344  27.303   1.979  -0.042  -0.200  N10  Y4P  24  
Y4P  N15  N3   N  0  1  N  N  N   5.597  21.892  24.913   4.665   4.440   0.613  N15  Y4P  25  
Y4P  O01  O1   O  0  1  N  N  N  10.288  23.326  25.247  -2.738   0.535   1.224  O01  Y4P  26  
Y4P  O18  O2   O  0  1  N  N  N   6.755  20.212  23.787   5.304   2.678   1.890  O18  Y4P  27  
Y4P  O20  O3   O  0  1  N  N  N  10.067  18.538  29.449   2.771  -1.632  -2.484  O20  Y4P  28  
Y4P  O21  O4   O  0  1  N  N  N   9.978  22.362  28.274   0.597  -0.172  -1.931  O21  Y4P  29  
Y4P  O22  O5   O  0  1  N  N  N  10.798  25.362  25.912  -3.945   0.331  -0.626  O22  Y4P  30  
Y4P  H1   H1   H  0  1  N  N  N   8.524  20.405  28.476   2.764   0.925  -1.887  H1   Y4P  31  
Y4P  H2   H2   H  0  1  N  N  N   7.069  19.159  26.807   4.443   0.459   0.617  H2   Y4P  32  
Y4P  H3   H3   H  0  1  N  N  N   8.465  19.082  25.680   5.048   1.216  -0.876  H3   Y4P  33  
Y4P  H4   H4   H  0  1  N  N  N   8.510  21.543  25.565   2.684   2.249   0.771  H4   Y4P  34  
Y4P  H5   H5   H  0  1  N  N  N   6.022  23.696  25.950   4.169   5.303  -1.247  H5   Y4P  35  
Y4P  H6   H6   H  0  1  N  N  N   4.820  22.626  26.748   2.821   5.200  -0.076  H6   Y4P  36  
Y4P  H7   H7   H  0  1  N  N  N   6.452  21.343  27.721   3.971   3.036  -1.863  H7   Y4P  37  
Y4P  H8   H8   H  0  1  N  N  N   7.572  22.686  27.309   2.279   3.274  -1.312  H8   Y4P  38  
Y4P  S1   S1   S  0  1  N  Y  N   9.660  17.705  27.591   4.162  -2.100  -0.269  S1   Y4P  39  
Y4P  H10  H10  H  0  1  N  N  N   8.229  18.015  28.677   4.615  -0.743  -2.206  H10  Y4P  40  
Y4P  H11  H11  H  0  1  N  N  N   8.802  25.485  25.635  -4.900   1.804   0.501  H11  Y4P  41  
Y4P  H12  H12  H  0  1  N  N  N   9.817  25.517  24.154  -5.301   0.128   0.946  H12  Y4P  42  
Y4P  H13  H13  H  0  1  N  N  N  12.361  21.662  26.250  -0.394   0.295   1.005  H13  Y4P  43  
Y4P  H14  H14  H  0  1  N  N  N  12.917  22.520  29.114  -1.363  -2.057   1.215  H14  Y4P  44  
Y4P  H15  H15  H  0  1  N  N  N  13.237  20.895  28.418  -0.261  -2.541  -0.097  H15  Y4P  45  
Y4P  H16  H16  H  0  1  N  N  N  14.485  23.498  27.469   1.659  -1.651   1.276  H16  Y4P  46  
Y4P  H17  H17  H  0  1  N  N  N  16.022  22.024  26.225  -0.467  -1.493   3.460  H17  Y4P  47  
Y4P  H18  H18  H  0  1  N  N  N  15.079  20.594  26.769   1.272  -1.165   3.651  H18  Y4P  48  
Y4P  H19  H19  H  0  1  N  N  N  14.315  21.821  25.702   0.268  -0.087   2.653  H19  Y4P  49  
Y4P  H20  H20  H  0  1  N  N  N  15.230  22.891  29.773   1.069  -4.059   1.281  H20  Y4P  50  
Y4P  H21  H21  H  0  1  N  N  N  15.719  21.268  29.179   1.669  -3.545   2.876  H21  Y4P  51  
Y4P  H22  H22  H  0  1  N  N  N  16.557  22.736  28.572  -0.077  -3.775   2.614  H22  Y4P  52  
Y4P  H23  H23  H  0  1  N  N  N  10.515  27.484  26.396  -6.080   1.396  -1.723  H23  Y4P  53  
Y4P  H24  H24  H  0  1  N  N  N   8.231  28.346  26.283  -7.540   2.595  -0.061  H24  Y4P  54  
Y4P  H25  H25  H  0  1  N  N  N   7.093  28.520  24.027  -6.597   0.780   1.763  H25  Y4P  55  
Y4P  H26  H26  H  0  1  N  N  N   7.674  26.825  24.142  -8.301   1.292   1.957  H26  Y4P  56  
Y4P  H27  H27  H  0  1  N  N  N   8.429  28.736  22.218  -7.291  -1.363   1.289  H27  Y4P  57  
Y4P  H28  H28  H  0  1  N  N  N   9.242  27.170  22.553  -8.998  -0.860   1.484  H28  Y4P  58  
Y4P  H29  H29  H  0  1  N  N  N  10.627  29.543  22.933  -8.859  -1.470  -0.957  H29  Y4P  59  
Y4P  H30  H30  H  0  1  N  N  N  10.240  29.931  25.553  -9.681   1.027  -0.352  H30  Y4P  60  
Y4P  H31  H31  H  0  1  N  N  N   8.767  30.342  24.611  -8.749   1.053  -1.897  H31  Y4P  61  
Y4P  H32  H32  H  0  1  N  N  N  11.236  27.006  23.639  -6.807  -0.754  -2.226  H32  Y4P  62  
Y4P  H33  H33  H  0  1  N  N  N  11.873  28.280  24.734  -6.139  -1.307  -0.659  H33  Y4P  63  
Y4P  H34  H34  H  0  1  N  N  N  12.530  24.280  27.298  -1.693  -0.370  -1.536  H34  Y4P  64  
Y4P  H35  H35  H  0  1  N  N  N  10.908  19.770  26.764   2.115  -0.153   0.754  H35  Y4P  65  
Y4P  H36  H36  H  0  1  N  N  N   4.843  22.024  24.270   5.255   5.111   0.993  H36  Y4P  66  
Y4P  H37  H37  H  0  1  N  N  N  10.235  17.696  29.856   1.948  -1.879  -2.040  H37  Y4P  67  
Y4P  O1   O6   O  0  1  N  Y  N       ?       ?       ?   5.243  -1.563   0.481  O1   Y4P  68  
Y4P  O2   O7   O  0  1  N  Y  N       ?       ?       ?   2.993  -2.587   0.375  O2   Y4P  69  
Y4P  O3   O8   O  0  1  N  Y  N       ?       ?       ?   4.751  -3.325  -0.953  O3   Y4P  70  
Y4P  H9   H9   H  0  1  N  Y  N       ?       ?       ?   5.037  -4.017  -0.342  H9   Y4P  71  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Y4P  C27  C28  SING  N  N   1  
Y4P  C27  C26  SING  N  N   2  
Y4P  C28  C30  SING  N  N   3  
Y4P  C28  C29  SING  N  N   4  
Y4P  O18  C14  DOUB  N  N   5  
Y4P  C26  C25  SING  N  N   6  
Y4P  C30  C24  SING  N  N   7  
Y4P  C14  N15  SING  N  N   8  
Y4P  C14  C13  SING  N  N   9  
Y4P  C29  C25  SING  N  N  10  
Y4P  N15  C16  SING  N  N  11  
Y4P  C23  C24  SING  N  N  12  
Y4P  C23  O22  SING  N  N  13  
Y4P  O01  C02  DOUB  N  N  14  
Y4P  C25  C24  SING  N  N  15  
Y4P  C13  C12  SING  N  N  16  
Y4P  C13  C17  SING  N  N  17  
Y4P  O22  C02  SING  N  N  18  
Y4P  C02  N03  SING  N  N  19  
Y4P  C16  C17  SING  N  N  20  
Y4P  C12  C11  SING  N  N  21  
Y4P  C07  C06  SING  N  N  22  
Y4P  N03  C04  SING  N  N  23  
Y4P  C04  C09  SING  N  N  24  
Y4P  C04  C05  SING  N  N  25  
Y4P  N10  C09  SING  N  N  26  
Y4P  N10  C11  SING  N  N  27  
Y4P  C09  O21  DOUB  N  N  28  
Y4P  C11  C19  SING  N  N  29  
Y4P  C06  C05  SING  N  N  30  
Y4P  C06  C08  SING  N  N  31  
Y4P  C19  O20  SING  N  N  32  
Y4P  C11  H1   SING  N  N  33  
Y4P  C12  H2   SING  N  N  34  
Y4P  C12  H3   SING  N  N  35  
Y4P  C13  H4   SING  N  N  36  
Y4P  C16  H5   SING  N  N  37  
Y4P  C16  H6   SING  N  N  38  
Y4P  C17  H7   SING  N  N  39  
Y4P  C17  H8   SING  N  N  40  
Y4P  C19  S1   SING  N  N  41  
Y4P  C19  H10  SING  N  N  42  
Y4P  C23  H11  SING  N  N  43  
Y4P  C23  H12  SING  N  N  44  
Y4P  C04  H13  SING  N  N  45  
Y4P  C05  H14  SING  N  N  46  
Y4P  C05  H15  SING  N  N  47  
Y4P  C06  H16  SING  N  N  48  
Y4P  C07  H17  SING  N  N  49  
Y4P  C07  H18  SING  N  N  50  
Y4P  C07  H19  SING  N  N  51  
Y4P  C08  H20  SING  N  N  52  
Y4P  C08  H21  SING  N  N  53  
Y4P  C08  H22  SING  N  N  54  
Y4P  C24  H23  SING  N  N  55  
Y4P  C25  H24  SING  N  N  56  
Y4P  C26  H25  SING  N  N  57  
Y4P  C26  H26  SING  N  N  58  
Y4P  C27  H27  SING  N  N  59  
Y4P  C27  H28  SING  N  N  60  
Y4P  C28  H29  SING  N  N  61  
Y4P  C29  H30  SING  N  N  62  
Y4P  C29  H31  SING  N  N  63  
Y4P  C30  H32  SING  N  N  64  
Y4P  C30  H33  SING  N  N  65  
Y4P  N03  H34  SING  N  N  66  
Y4P  N10  H35  SING  N  N  67  
Y4P  N15  H36  SING  N  N  68  
Y4P  O20  H37  SING  N  N  69  
Y4P  S1   O1   DOUB  N  N  70  
Y4P  S1   O2   DOUB  N  N  71  
Y4P  S1   O3   SING  N  N  72  
Y4P  O3   H9   SING  N  N  73  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Y4P  InChI             InChI                 1.03   "InChI=1S/C22H37N3O8S/c1-12(2)7-17(25-22(29)33-11-16-9-13-3-4-14(16)8-13)20(27)24-18(21(28)34(30,31)32)10-15-5-6-23-19(15)26/h12-18,21,28H,3-11H2,1-2H3,(H,23,26)(H,24,27)(H,25,29)(H,30,31,32)/t13-,14+,15-,16+,17-,18-,21+/m0/s1"  
Y4P  InChIKey          InChI                 1.03   CDEICDIJDMTLMS-NFFJHMNLSA-N  
Y4P  SMILES_CANONICAL  CACTVS                3.385  "CC(C)C[C@H](NC(=O)OC[C@H]1C[C@H]2CC[C@@H]1C2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@H](O)[S](O)(=O)=O"  
Y4P  SMILES            CACTVS                3.385  "CC(C)C[CH](NC(=O)OC[CH]1C[CH]2CC[CH]1C2)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)[S](O)(=O)=O"  
Y4P  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OC[C@H]2C[C@H]3CC[C@@H]2C3"  
Y4P  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCC2CC3CCC2C3"  
#
_pdbx_chem_comp_identifier.comp_id          Y4P
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{S})-2-[[(2~{S})-2-[[(1~{R},2~{S},4~{S})-2-bicyclo[2.2.1]heptanyl]methoxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Y4P  "Create component"    2021-02-03  RCSB  
Y4P  "Other modification"  2021-02-09  RCSB  
Y4P  "Modify name"         2021-02-09  RCSB  
Y4P  "Initial release"     2021-02-17  RCSB  
##
